Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_10g0001300 | OGI:10005900 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr10:2150601-2153560 | ||||||||
| Gene Symbol | OsFbox512, Os_F0102 | ||||||||||
| DNA seq | gaaaaaaattaatggacataagaatgtttttgtaaaatgaaaacgaaattgaagagactgaacaaaaaatagttgatgaatggaaagaaattctgttgtacaagggataaataggtccttggttgaacaactgctaatgtaatcagagattaggagtggaatgaaaactagcaaagttattggatgccattactacagaccagcaaaaatgcaaaataagacctcggaactctactgtagccagtgaatgtagcagaaagcgagttgattcttcaatgggatgacaaacaaatgcaaaagatcctttggcatttcatctctcctcataccgaacaaatgcaggtaactcatcctcttcctcgtattggccccagtgtttgatatgaaactgaacagaggccatgccattactagcaaagaaatcttgcacactgatgacctggggatcatcctccaagcatttgacttcaacaatcttaaggtgctcgcatgtaaatgatctttccataagctcgctaacgatccttggagattttttccaaatgcactgtagcacgaaaaacagtaagttatttcccaatgcacaacctcttgagcaaatagaaacaatcgagtaggatctgtattacatttgaggaaagcaattaccttcgcaagattcagagttaacttctctagtctcgctgagttctgaaggaagacaattagtgcatagaagtttgcatccaggcaccactgaccaagagtcaggttgacaacattgatgaattctgggcaccattgcaaattgttttcgaacgtcagctgcaaaaacaccacttcctcaatcacaaaacttatcaactaaattgagagcttcaagataatggatggcaaaagatcacagtagaaaatgaactgatgtcaacaaaagaccaaaataaacaatgttctacttgTttgttttcaccaagagtctctcgagcacatgcaactcactgtcaggatggtttccatggaagtccAaaaccagtAAaaaaaacaacacaaataTatcatcaggaagcagtaggacattcaacaattccccagaagaattttctgtttgtatgttgtcttttaatgactcctaacattaaaattatgctagcataatgtctgtgtgttgtaacaCccaacacattacacatcccaaccaagtatactgtctaaaatgtaaaatgcaatatacaattaatcctgaaatctaaagattacatgaaagattggacaatcgaaaatgacagcctatacaaatcaataTttttctttcactatcttacaaatagcatgCAcatgtatttgcagccatAaaaaatctggccttggggcaggtgtaggacatacaatcaccaataaccctctCtttcAaaaagtacaactaaagtaaaatagtctgtcagatattggacaaaatgcattcagttggcaaccctgatattgcatctagactagaacatgtaaagtcctacatgagaaatgatcatgtttcatttttagatcaaacttcgaactaagaaacttcagggctagttgaataatgcacaaatgaccggagtacatgaactagattgcatcaagtgttgataacatccatcatattatcaatacatcatggtttcacaacatatgaattagctatgcgatgttagttttacaggttcaggctactaaaccattgcaattatgaaatgacgagaagaaaagcttaagtttcaattttttcatattgatacctaaatcaaggtgggtggatacactaagtaatacaaataaccatacctctgtaccctcataattcaactccaagtttgtaacaccagaaaggctccagagacactggcggagatcattagcatcaaaaccataactgaatgtataaaatttaactgatactgatgtggtcgttagtaatgccatgtcctttagcataggtgtggaattctcaggactagacaaggtgagagaagtaacacttggaatagaaatatatgccttgttcgccttggagaattcagtgtcgtcgattgtcaaaaccttcagtgactgggagaagatCTCctcatccgcaatagtgcaatcatgtaagaagagttcttccaattctggacagccggcgtcaagttgcttgaagaaaccttggtgtaaagaaACacaggagaacccaatttttctcaggtagcatgaagtgaacactgagtgatcgagctccaatggaaaggagaacacgacaacctccataaccctggcctgcttttgcaaagcatggctaatccacctgttggcatctacattggaatccttgtattcattgtacccgtctgatattttgtacttgagccagaatttgtccatcatggtggcaggatcgcggagctccaacatccggttaacgaacctcttgaacgccacctcgtcgttgtagtcctcatcgtccccttggtaatcaatgaaatcaaactcattgaagtcggcgttgatgcagggcacggtgcgccagagatcgctccaccgccgggacagcacgcacgtctgcacggcctggcgcgcgttcaggaaggacatgatgtggtggaggatttcgtcggtgaggccgctgatccagtccatgcaggcagcgcgcgtcggggccttgaccctcctgcgcctgcgcctcccaggacgaccctccatggcggccgatcacgcagtggcgtttcgtcgaacaggtggtgcgcgtggaaactgcacaagagcagaagaccAaaagaagccatatgaatcAacagcgcaagtaagcaagaattgagatcgcagtgcaaggaaggagtcgcgagcagaatctgccggtgaagaactcgccgccgacctccaatggcgctcacgtcgccggcgtcgcgcctcgactttccagagcaccacggaatgggaggcggcgtctttcgcagtctgccccacggaat
More
|
||||||||||
| CDS seq | atggagggtcgtcctgggaggcgcaggcgcaggagggtcaaggccccgacgcgcgctgcctgcatggactggatcagcggcctcaccgacgaaatcctccaccacatcatgtccttcctgaacgcgcgccaggccgtgcagacgtgcgtgctgtcccggcggtggagcgatctctggcgcaccgtgccctgcatcaacgccgacttcaatgagtttgatttcattgattaccaaggggacgatgaggactacaacgacgaggtggcgttcaagaggttcgttaaccggatgttggagctccgcgatcctgccaccatgatggacaaattctggctcaagtacaaaatatcagacgggtacaatgaatacaaggattccaatgtagatgccaacaggtggattagccatgctttgcaaaagcaggccagggttatggaggttgtcgtgttctcctttccattggagctcgatcactcagtgttcacttcatgctacctgagaaaaattgggttctcctgtGTttctttacaccaaggtttcttcaagcaacttgacgccggctgtccagaattggaagaactcttcttacatgattgcactattgcggatgagGAGatcttctcccagtcactgaaggttttgacaatcgacgacactgaattctccaaggcgaacaaggcatatatttctattccaagtgttacttctctcaccttgtctagtcctgagaattccacacctatgctaaaggacatggcattactaacgaccacatcagtatcagttaaattttatacattcagttatggttttgatgctaatgatctccgccagtgtctctggagcctttctggtgttacaaacttggagttgaattatgagggtacagagctgacgttcgaaaacaatttgcaatggtgcccagaattcatcaatgttgtcaacctgactcttggtcagtggtgcctggatgcaaacttctatgcactaattgtcttccttcagaactcagcgagactagagaagttaactctgaatcttgcgaaggatcgttag
More
|
||||||||||
| Protein seq | MEGRPGRRRRRRVKAPTRAACMDWISGLTDEILHHIMSFLNARQAVQTCVLSRRWSDLWRTVPCINADFNEFDFIDYQGDDEDYNDEVAFKRFVNRMLELRDPATMMDKFWLKYKISDGYNEYKDSNVDANRWISHALQKQARVMEVVVFSFPLELDHSVFTSCYLRKIGFSCVSLHQGFFKQLDAGCPELEELFLHDCTIADEEIFSQSLKVLTIDDTEFSKANKAYISIPSVTSLTLSSPENSTPMLKDMALLTTTSVSVKFYTFSYGFDANDLRQCLWSLSGVTNLELNYEGTELTFENNLQWCPEFINVVNLTLGQWCLDANFYALIVFLQNSARLEKLTLNLAKDR |
||||||||||
| Function | Putative FBD-associated F-box protein At1g78730 [UniProtKB/Swiss-Prot:Q9ZV91] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_10g0001300 | OsLaMu_10g0001300.01 | Chr10 | 2150601 | 2153560 | - | NAM | ||
| CDS seq | atggagggtcgtcctgggaggcgcaggcgcaggagggtcaaggccccgacgcgcgctgcctgcatggactggatcagcggcctcaccgacgaaatcctccaccacatcatgtccttcctgaacgcgcgccaggccgtgcagacgtgcgtgctgtcccggcggtggagcgatctctggcgcaccgtgccctgcatcaacgccgacttcaatgagtttgatttcattgattaccaaggggacgatgaggactacaacgacgaggtggcgttcaagaggttcgttaaccggatgttggagctccgcgatcctgccaccatgatggacaaattctggctcaagtacaaaatatcagacgggtacaatgaatacaaggattccaatgtagatgccaacaggtggattagccatgctttgcaaaagcaggccagggttatggaggttgtcgtgttctcctttccattggagctcgatcactcagtgttcacttcatgctacctgagaaaaattgggttctcctgtGTttctttacaccaaggtttcttcaagcaacttgacgccggctgtccagaattggaagaactcttcttacatgattgcactattgcggatgagGAGatcttctcccagtcactgaaggttttgacaatcgacgacactgaattctccaaggcgaacaaggcatatatttctattccaagtgttacttctctcaccttgtctagtcctgagaattccacacctatgctaaaggacatggcattactaacgaccacatcagtatcagttaaattttatacattcagttatggttttgatgctaatgatctccgccagtgtctctggagcctttctggtgttacaaacttggagttgaattatgagggtacagagctgacgttcgaaaacaatttgcaatggtgcccagaattcatcaatgttgtcaacctgactcttggtcagtggtgcctggatgcaaacttctatgcactaattgtcttccttcagaactcagcgagactagagaagttaactctgaatcttgcgaaggatcgttag
More
|
|||||||
| Protein seq | MEGRPGRRRRRRVKAPTRAACMDWISGLTDEILHHIMSFLNARQAVQTCVLSRRWSDLWRTVPCINADFNEFDFIDYQGDDEDYNDEVAFKRFVNRMLELRDPATMMDKFWLKYKISDGYNEYKDSNVDANRWISHALQKQARVMEVVVFSFPLELDHSVFTSCYLRKIGFSCVSLHQGFFKQLDAGCPELEELFLHDCTIADEEIFSQSLKVLTIDDTEFSKANKAYISIPSVTSLTLSSPENSTPMLKDMALLTTTSVSVKFYTFSYGFDANDLRQCLWSLSGVTNLELNYEGTELTFENNLQWCPEFINVVNLTLGQWCLDANFYALIVFLQNSARLEKLTLNLAKDR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0126600 | RBH | 0.0 | 0.0 | 0.620611 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g03780 | SBH | 0.245913 | 0.266052 | 0.214727 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0126600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001310 | RBH | 0.165412 | 1.142419 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0001320 | RBH | 0.0 | 0.000000 | 0.258965 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0001270 | SBH | 0.370892 | 1.143315 | 0.902974 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0001210 | SBH | 0.023183 | 0.047970 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0001240 | SBH | 0.178343 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0030900 | SBH | 0.095367 | 0.415881 | 0.1572715 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0001370 | RBH | 0.0 | 0.044737 | 0.383252 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0034200 | RBH | 2.079148 | 2.0945665 | 7.0703795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0001270 | RBH | 0.012983 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0001350 | SBH | 0.214049 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0001340 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0001220 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0001400 | SBH | 0.000000 | 2.183259 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G001290 | RBH | 0.0 | 0.517712 | 0.552608 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001170 | RBH | 0.276951 | 0.000000 | 0.000000 |
