Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0126000 | OGI:10005900 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:1656688-1659696 | ||||||||
| Gene Symbol | OsFbox510, Os_F0210 | ||||||||||
| DNA seq | AAAAAAACATGAATCCCATATGGGATACTCAAACATGTAACATGCAGTGTTCTGATCATGTGATCAATGGTTTTCCAGCAAACAATGTAACCAAACAGGCAGAACGAATATCCGCGAATAGAACAACACTGAGTGACATTACAAGGTACAAGCAATGGAGCAACTCAAGAAGTCAAGATCCAAGACAACTGATTGGGTGCACTCAAGTCGTAGCACCAAACAAGAGCGGAAGATAAACTAGTCTTATGTGCCATCGAACTCAGCTGGAATCAACCAATGTATGTATATCCATCCCAAAAAGAATATTATTTTTCAATGGGACAACAAGAGAAGAGATCCTTTGATATTTCATATCTACTCAGGCCAGAAAATTAGAGGCCCTTGATGCTGCATCTGGCTTTAGTGTTTGATATGAATCTGAGCAGTGGTCATACCGCTACTAACAAAGAAGTCAACCAAGTGGTTGATCAGGGGATCATTCTCCGAGCATATGACTTCAACAATCTTAAGATGACCACATGTAAATGATCTTTCAGTAAGCTCACCAATGATTCTTTGTTGCTGATAACGAAACTGTAGCAAAGAAAACAGGTAAGCTATATCCTGAAGACAAGCTCATGTGCAAAATTTTCAAGTTGGATCAGTACACATTTGGAGAAGATCATTTACCGGATGGAGTTTCAGTGTTAGCTTCTCTAGTCTTGGTGTGTTCTGCATGAATAAAATTAAAGCATAGAAATTCGCATCCAGACACCATCGACCGAGAGTCAGGTTGACAAGATTGTTGAATTTCGGACACAATTGCAAATTGCCTTCGATTGTCAGCTGCACAAGATTGAAATGATTAGCTGGCTAAAAAAAACTTCCAACAAAATTGAGCGAGCTAACATTATGTGATAAATATCCTGTTTGCAGCGCAGGTATAACTGTAAGAATGTTAAAGGACCACGAGAAGAAGAAAAAAAACTTATGACAACAAAAATACAGCATTAAAGCATGCTATAGTTTTTATTTTTATTTTTTGCCATCAACAAGAATCCAAAGCCAGGAGAATATTTGAATTAATTGTCAGGATGCTTTCTAAGAAAGTCGAGTACATTAGTACAACAATGAAAATACAACGCAACTATGTCATGATTCAAGAGGTAGCAGTACAAGACAGATTTCTTGCTAAAGCATTTTCCATTTGCATGTTGCCTTTGAATGCCTCTTAATTTTCGAAGTTATGTAAAACTGTCAAATGAAGTTAAATAATCACTCAAATATTAGACAAGATACATTTTCAGTTGGTAACCCCAAAATTGAATCCACATCACAAAATATTAGAGTTGTCGAATAGGAAATGCTCCAGTCCCTTGTGAAGAACAAAAAGCTTCCAACTAAGGTATTTCTAATAAAGTGATCAACTGGTTGATTTATCTACAGATGACCTGGGTACATGAACGAGATTGCATCAAGTGGTTGACAGGTTGAGTTATCATATCAGCGCATCATGATTTCATGACATAAGAATTAGCCATAGAGGCAACTAATATAGTGCTGTTATGAAGTGTCAGGAAGCATACTGCGCTTTAGATTTCACTTTTTCAAATTGATACCAAAATTAAGATGCATGGATATGCTAAGATAGAGGGGAATATGTAAGATAAAAAATCATACCTCGCCCAGATAATAGAACTCCAAATTTTTAACACCAGAAAGTGCCCATAGATATTGGCGCAAACCCCTAGCATCAAATTCATCAATAAACTCACTAGGTTTAACTGATGCAGTCACTACTGATGCCATGTCCTTCAGTACAACTATGCCGTGCGCAGGCCTCCACAATGTCAGAGAAGTAACACTTGGAGTATTAATAGAAGTCTTGTGTTCCATGGAGAACTTAGTGTCCTTGATGGTCAAAACCTTCAGTGTCTGGGAGGAGATCTCATCACCGCTAATGACGCAGTCATCTAAGGAGAGATCTTCCAATGCTGGACAGCCCGACTCGAGTTGCTTGAAGAAACCATCTTCCAGAAGAACACTTGAGAACACAACTTTTGTCAGGTAGCTTGAAGTAAACACAGAGTGATCAATCACCAACGGGTAGAGGTCAGCGAAGACGAGGTCACCGTAAACCTCTACAACCCGGGCCTTCTTCTGCAAAGCTTGACTGATCCACCTGTTGGCGGCAGCATCTTGCGACTCGGTGTCATCCTCGTTGTCATCAGATATGGAGTACCAGAGACAGAACTTGTCAATAGAGGCAACAGGGTCGCGGAGTTCCAGCAGCCGGTTCACAAATCTCTTGAACATCGGCACCGCCACCGCCAACGCCTCGTCGTATCCCGCTTTAGTGTCCGTCATCTCGAAGAACTGCTTGTAGTCCGCGTTGATGAGAGGCATGGAGAGCCAGAGGTTGCGCCACCGCCGCGAGAGCACGCACGTCTGCACTGCCTCGCGCAAGGTGAGGAAGGACATGATGCGGTGAAGAACTCCTTCGGGGAGGCCGCTGATCATGTCAGTGCTGGGGGCGTCCCTCTTGAACATGGTGTCCGAGCCACGCCCGCGGAGGCCATTCGTCGAATAGGTGTCGTGCGCGGACTGGAATCTGCAGGACGGGAGAAAAAAAAATCAATCAAGGATCAATACCCCATGGATCCGCAGCTCAGAACTATAAGCAACAAAGATTTGGGATCGCAGTGCAACACTCGAGCAGAAAAAAATCAATCGGGTGAAATGAAATCTCCATGGACCGAAGAGGAAAGATGCAAGAAAGAAACCATGAATCGAGCAAGATTCGGCATCGCAGCAAAGCGAGATTCGAGCAGAAAATTGATGGATGGGTGAAAATTTTCCAGCAAATCGAAGAAGGAAAAAGGAAGAAGAAGCATACTTGATAATCATTTGGCGATCGCGCCGCAAGCACAGTTCACCTCAGAAAGGGAAGGGGAGTGAGGAAAGGGGGAATGCTCCAGAAGGCAGGCAGATCGAGCAGCTTTGTATATTTTCCTTTTTATTTTTGTGGCC
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| CDS seq | ATGTTCAAGAGGGACGCCCCCAGCACTGACATGATCAGCGGCCTCCCCGAAGGAGTTCTTCACCGCATCATGTCCTTCCTCACCTTGCGCGAGGCAGTGCAGACGTGCGTGCTCTCGCGGCGGTGGCGCAACCTCTGGCTCTCCATGCCTCTCATCAACGCGGACTACAAGCAGTTCTTCGAGATGACGGACACTAAAGCGGGATACGACGAGGCGTTGGCGGTGGCGGTGCCGATGTTCAAGAGATTTGTGAACCGGCTGCTGGAACTCCGCGACCCTGTTGCCTCTATTGACAAGTTCTGTCTCTGGTACTCCATATCTGATGACAACGAGGATGACACCGAGTCGCAAGATGCTGCCGCCAACAGGTGGATCAGTCAAGCTTTGCAGAAGAAGGCCCGGGTTGTAGAGGTTTACGGTGACCTCGTCTTCGCTGACCTCTACCCGTTGGTGATTGATCACTCTGTGTTTACTTCAAGCTACCTGACAAAAGTTGTGTTCTCAAGTGTTCTTCTGGAAGATGGTTTCTTCAAGCAACTCGAGTCGGGCTGTCCAGCATTGGAAGATCTCTCCTTAGATGACTGCGTCATTAGCGGTGATGAGATCTCCTCCCAGACACTGAAGGTTTTGACCATCAAGGACACTAAGTTCTCCATGGAACACAAGACTTCTATTAATACTCCAAGTGTTACTTCTCTGACATTGTGGAGGCCTGCGCACGGCATAGTTGTACTGAAGGACATGGCATCAGTAGTGACTGCATCAGTTAAACCTAGTGAGTTTATTGATGAATTTGATGCTAGGGGTTTGCGCCAATATCTATGGGCACTTTCTGGTGTTAAAAATTTGGAGTTCTATTATCTGGGCGAGCTGACAATCGAAGGCAATTTGCAATTGTGTCCGAAATTCAACAATCTTGTCAACCTGACTCTCGGTCGATGGTGTCTGGATGCGAATTTCTATGCTTTAATTTTATTCATGCAGAACACACCAAGACTAGAGAAGCTAACACTGAAACTCCATCCGTTTCGTTATCAGCAACAAAGAATCATTGGTGAGCTTACTGAAAGATCATTTACATGTGGTCATCTTAAGATTGTTGAAGTCATATGCTCGGAGAATGATCCCCTGATCAACCACTTGGTTGACTTCTTTGTTAGTAGCGGTATGACCACTGCTCAGATTCATATCAAACACTAA
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| Protein seq | MFKRDAPSTDMISGLPEGVLHRIMSFLTLREAVQTCVLSRRWRNLWLSMPLINADYKQFFEMTDTKAGYDEALAVAVPMFKRFVNRLLELRDPVASIDKFCLWYSISDDNEDDTESQDAAANRWISQALQKKARVVEVYGDLVFADLYPLVIDHSVFTSSYLTKVVFSSVLLEDGFFKQLESGCPALEDLSLDDCVISGDEISSQTLKVLTIKDTKFSMEHKTSINTPSVTSLTLWRPAHGIVVLKDMASVVTASVKPSEFIDEFDARGLRQYLWALSGVKNLEFYYLGELTIEGNLQLCPKFNNLVNLTLGRWCLDANFYALILFMQNTPRLEKLTLKLHPFRYQQQRIIGELTERSFTCGHLKIVEVICSENDPLINHLVDFFVSSGMTTAQIHIKH |
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| Function | F-box protein At3g03040 [UniProtKB/Swiss-Prot:Q9LDJ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0126000 | OsNip_10t0126000-01 | Chr10 | 1656688 | 1659249 | - | RAP2018-11-26 | ||
| CDS seq | ATGTTCAAGAGGGACGCCCCCAGCACTGACATGATCAGCGGCCTCCCCGAAGGAGTTCTTCACCGCATCATGTCCTTCCTCACCTTGCGCGAGGCAGTGCAGACGTGCGTGCTCTCGCGGCGGTGGCGCAACCTCTGGCTCTCCATGCCTCTCATCAACGCGGACTACAAGCAGTTCTTCGAGATGACGGACACTAAAGCGGGATACGACGAGGCGTTGGCGGTGGCGGTGCCGATGTTCAAGAGATTTGTGAACCGGCTGCTGGAACTCCGCGACCCTGTTGCCTCTATTGACAAGTTCTGTCTCTGGTACTCCATATCTGATGACAACGAGGATGACACCGAGTCGCAAGATGCTGCCGCCAACAGGTGGATCAGTCAAGCTTTGCAGAAGAAGGCCCGGGTTGTAGAGGTTTACGGTGACCTCGTCTTCGCTGACCTCTACCCGTTGGTGATTGATCACTCTGTGTTTACTTCAAGCTACCTGACAAAAGTTGTGTTCTCAAGTGTTCTTCTGGAAGATGGTTTCTTCAAGCAACTCGAGTCGGGCTGTCCAGCATTGGAAGATCTCTCCTTAGATGACTGCGTCATTAGCGGTGATGAGATCTCCTCCCAGACACTGAAGGTTTTGACCATCAAGGACACTAAGTTCTCCATGGAACACAAGACTTCTATTAATACTCCAAGTGTTACTTCTCTGACATTGTGGAGGCCTGCGCACGGCATAGTTGTACTGAAGGACATGGCATCAGTAGTGACTGCATCAGTTAAACCTAGTGAGTTTATTGATGAATTTGATGCTAGGGGTTTGCGCCAATATCTATGGGCACTTTCTGGTGTTAAAAATTTGGAGTTCTATTATCTGGGCGAGCTGACAATCGAAGGCAATTTGCAATTGTGTCCGAAATTCAACAATCTTGTCAACCTGACTCTCGGTCGATGGTGTCTGGATGCGAATTTCTATGCTTTAATTTTATTCATGCAGAACACACCAAGACTAGAGAAGCTAACACTGAAACTCCATCCGTTTCGTTATCAGCAACAAAGAATCATTGGTGAGCTTACTGAAAGATCATTTACATGTGGTCATCTTAAGATTGTTGAAGTCATATGCTCGGAGAATGATCCCCTGATCAACCACTTGGTTGACTTCTTTGTTAGTAGCGGTATGACCACTGCTCAGATTCATATCAAACACTAA
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| Protein seq | MFKRDAPSTDMISGLPEGVLHRIMSFLTLREAVQTCVLSRRWRNLWLSMPLINADYKQFFEMTDTKAGYDEALAVAVPMFKRFVNRLLELRDPVASIDKFCLWYSISDDNEDDTESQDAAANRWISQALQKKARVVEVYGDLVFADLYPLVIDHSVFTSSYLTKVVFSSVLLEDGFFKQLESGCPALEDLSLDDCVISGDEISSQTLKVLTIKDTKFSMEHKTSINTPSVTSLTLWRPAHGIVVLKDMASVVTASVKPSEFIDEFDARGLRQYLWALSGVKNLEFYYLGELTIEGNLQLCPKFNNLVNLTLGRWCLDANFYALILFMQNTPRLEKLTLKLHPFRYQQQRIIGELTERSFTCGHLKIVEVICSENDPLINHLVDFFVSSGMTTAQIHIKH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0126000 | OsNip_10t0126000-02 | Chr10 | 1656726 | 1659696 | - | IsoSeq | ||
| CDS seq | GCCACAAAAATAAAAAGGAAAATATACAAAGCTGCTCGATCTGCCTGCCTTCTGGAGCATTCCCCCTTTCCTCACTCCCCTTCCCTTTCTGAGGTGAACTGTGCTTGCGGCGCGATCGCC |
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| Protein seq | ATKIKRKIYKAARSACLLEHSPFPHSPSLSEVNCACGAIA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.717123 | 1.891064 | 7.372031 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0127000 | SBH | 0.837057 | 0.604194 | 1.839073 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g03690 | RBH | 1.061145 | 1.215766 | 1.830963 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0126000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001260 | SBH | 0.506200 | 2.758842 | 4.658386 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0001260 | RBH | 0.000000 | 0.000000 | 1.974653 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0001230 | SBH | 0.673449 | 2.347845 | 9.506536 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0001170 | SBH | 0.263963 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0001210 | RBH | 5.722209 | 4.579731 | 12.433402 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0031800 | SBH | 0.394214 | 1.1757945 | 0.7663015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0001310 | RBH | 0.091093 | 0.236759 | 1.971783 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0034200 | RBH | 2.079148 | 2.0945665 | 7.0703795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0001210 | RBH | 0.177105 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0001290 | RBH | 0.485240 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0001280 | RBH | 2.203622 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0001220 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0001250 | RBH | 0.386138 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G001240 | RBH | 0.318734 | 0.952789 | 2.023957 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001120 | RBH | 1.513822 | 6.351990 | 4.641785 |
