Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0110800 | OGI:10003180 | 14/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:771699-776341 | ||||||||
| Gene Symbol | PTR | ||||||||||
| DNA seq | AGCAATTAGCAATTGATGTTAAGTGTTTTTTTAACCAAGTCGTTATAATTCATAAGATACCCAATATATAGTTATAATTTAATATTTACAGCGTGTTAATAAATATCCCATGCAACGCACGGGTTAACGGCTAGTATACTTAATTTGGCATGAACCATGACGAATGTGCACCCAAGAAGAGTGTAGGTATAAATGTCAAGACGACAGCGTGTTGTTATTGGCTCTATATCTGATTGAGCAATGCAAGAAGTGCAGCAGGTTGAGGACGCTAACAACAGCCATCATCCAGAAGAAGTAGTCCAGGTGCCCCTCGTCGAGGTTGTCCGGGATCCAGCCGGCCCCGCCGCCGCGCGTGGTGGCCGCCGCCACCACGACGAGCACGCCGGAGTTGAGGTAGTTGGCGACCGCGATGGCGAGCTGCCCGAGCGCCGTGCACAGGCTCTTCATCGACTCCGGCGACTGCTCGTAGAAGAACTCCATCATGCCGATCACGCTGAACGCCTCCGCCACGCCCAGCACCAGGTACGACGGCGCCTGCCACATGATGCTCACCGGCGCTGGCGCCGTCCCCAGCCGCCGTGCCTCGACCACCGCCGAGTACGCCATGGCCACCGCGGCGAGCGCGAGGCCGACGCCAATGCGCTGCAGGTGGGAGATGCCACGGTCCTTGCCGGTGACGCGCCGTGCCAGTGGCACCAGCACGGTGTCGTAGACGGGGACCCAGACGAGGACGCTGATGACGTCGAAGGTGGCGATTGAGGCGGCCGGAAGGGTGAACGGGCCGACGCGGCCGTCCATGGCCATGCCCTGCTCGATCAGCGTCGACGTAATCTGCGCGGTCACCACGAAGAAGACGACCATGGACACCCAGACCGGGAACATCCGCAGCAGGATCTTCAGCTCCTCCACCTGCGAAACCGTGCACAGCCTCCACGGGCTCCACTGCGCCGGCGAGATCTCGTCGGACAAGATGGCAGCCTTGTCAAAGAACCTGGATATATACCACGCAAATGTTACAAGAGTGGATGAACCCAAGATAGCCGAATTCCACCACAGTTTTGCATTTTTAAATTTTTTGACAATTGAAACTAATCCAGGATGTCCATAAACTGTCATGCTACTTGGTTCTTAAAATTTACTTCCTCTGTCCATGATTATAAGGGATTATTCCTCATTTAGCACTAACTAAGACTCTGTTTGGATCATTTAGTCCCTCGACTAAAAAACTTTAGTCCACTACTGTTTGGATCGAGGGACTAAAAGAGACTAAAGGCACGTGAACCAAGGGAGAGAGAAGAGAGAGGTTGTTACTTTAGTCCCTATAAGTACCTCCAAGAGAGACTAAGGCCCTGTTTGATTCAGCTTAGGATTATTATAATCTGGATTATTAGGAGTAGATTATTATGCTAGATTATTATAATCTATAAGCCAGATTACTATAATCCAATAATCTCCTCTAGAGAAGCTTTTTCCAGATTATTGAGTGGCTAAAGACCCACTACCCTTAGATGCCTCAAATAATCCAGAGAAACAAACAACTCGTAGCTTATTTTATGTTAGCTTATTATAATCCAGGTTAGAGTAATCTGATTTAATAATCTAGATTACAATAATCTTAAACTGAAACAAATAGGGCCTAAATGAATTAGTCCCACGAAGGAAACATGGCCTAAGGAAGAGGGAAAAAGTGCATCTAAGGACATATGGGGATTAGGGATGGTGGGAACGGGGTATATTTTATTTTTCCTTTACAGGGTGGGGACTGGGGATTAGTACTAGTAGTACACATGATTTTCTCTGTGTGTCTTTTCATATGTGAATGGATGGGAGTGGGATTATTGATTGCTGTTGTAATGATCCTCTCGGGATAAACAAAATCCTTTATAATTTTGGACAAACCCAGGGACCAAAATCCCCTATAATTGTGGACGGAGGGAGTATATGTTCAACCTTTTAATAATATTTGTCAGTATATTTTCAAAAGTGTTTGATGTTTGTATTTTGTATTTGACATTCAGGAATATTAGTAGAGGATCAATGTATATGTTTTTATAAATGAAATGATATGGTAAGTGATGACAAATTACCTCCTACGAGGTAAGAGTCAAATCAACTACAGATGATTTTCTAAAACGTATGGTCTAGAATAACGTGGGAGCCTTATTGACAGTGAGAATTGTTCCCGGGAAATACATTATTTTGTACTGTACTAAATAATACTACATTAAATATAACAACTTTTAGCTATTCAGATACATAGATATAGGTTGCTATATTTTAAGACGGGGAAAGTATAAGTTGAGTATTGTGTCCACAAACTCTAAGCTGTAACTAGACATAAACCTTGATGGTTGATGCAATGAGCAATACCTGAATTGAGTGGTGAGTTGAGTCCTGTAATCATCTTCAGTCACTTTTGAAACCTCATGCAGGAGTGAGCTATCGTCAGGCAATTTCAGCCTATGATTCCTTACAGCTGCAACCACCACCTGGGACACCCTTGTCAGTGGACTCCCTCCCTGTTTCTTGTACCTGTAAACCTTCCTACCAGCGAAAAACAGGGCGAGGCCGAACCCCGAGAGTAGCATCGGGATCGCAAAACCGACGCTCCACCCTATGTTGGCCACCACCCAGACAAGCAGAGTCGTCGACAGCAGTGAGCCGACGTTCATTGAGAAGTAATACCAGTTGAAGAATGAGCCCTTCGCCAGCCGTTCCACCGGGTCAGCACTGTCAAATTGATCGGCTCCAAAGGCTGGAATGCAGGGCTTCATACATCCACTTCCAACGGCAGTAAGGTAGAGCCCTGTGTAGACCGTGGCACGGCAAATGTTCCAATTGTAGTAAGAAGAATTCAGGAACAATGGTGATGATGAAACCGTCACAATGAGCATTCCCTGACAAAACACAACTCTTCAGAGCAGCAAATTACAGAGGAGACTGCAGCTTATATCATTCAGTTGCTACTGATCTGTTTTGTTGCACTTACGATGATGATAATAAAGAGGGAAATAACTGTCGTCCAGTATCTTCCCCAATATGTATCAGCCAAGAAGGCTCCAATGAGTGGTGTGAAGAAGGAAGTGCCGATCCAAATAGACACACTTTGTGCAGCGTCGATGTTGCTTTCGTGCAGCGCACTCGTGAGGTACATGACTAAGTTCTTCGAAACCATGAAGAAGCACAAGGTTTCAGCGAATTGAGCACCTATGACATGTTCAGGACTCGGTAGGTGAATTACGTATGTTTAATCAAGGAAATTGAGGAGCACAAACAGAATAATTTTGTGAACTTCTCAGAAGTACCTAAAATGAAGAAGCATGCTCTCCAATGCCCTGTACTCTGCTTCAGTGCAGGCTTTTTGTCACTATTAACTGTTCCATCACATGTGTATTGTGAACATTGTTCCTGAATGACAATGCCAAAACCAATTTATGTTACACATAATGACAATTTCTGCAAAGATTCGCTGAAGAACAATATACTGCAAGAACTCGTTTCTTGTTTCTGCGCCGCAAACTGAAGCCAAACTATCAATGGTAGAATGTAGATGTCTTGTGTCTCATGGAGATGCAATATTTTGTTACATACCTAGGCAAAAGAGATCATGGCAAGGTAGTAGAATAATACCTCCGGAGGCAGCTGCTGAATCAGTGGCGTCTCCTCATCTGCTGCCCCTGCCTCCATGTAAGCCTTGTTGGAAAGAACCCAACCACTAAAAGAACTCGAGATTAATTCAGTAGTATAATCCTTCTACTGATCACGCACTTCGTACAAGCCATCCTCCATCTGGGCAAGATAATATAGGAAAATGTAAGAAAGTCAAGAAGATTATATGGAGCAAATTGTATCATGACTCACACTTCTTTTCTGATAGATTTCTCATATCCGATTTTCGTCTTAGAATAACGCCATCACGCAATTTCGATATTAGAAGATATGTAACACTATTGACTGCATATATTGTGAACGACTAATTTCTTGCAAGCAAACACCATATTCTGTCAGCTTGGAACTTAAAAATTTAATGATAACAAAGATAAGTTCAACTTTTTTGGGGGGTCAAATTAACTACTTTGCAGGGAAGGAAGAAATCATATATTATAGTTTTTCTTCCATCCATATATATTTGCCAGCAGCTAGAATCTTTGACTACGATATTTAGAATCAAAGATACCCCTATTTCTTATCCTATTCAATCTTGAATGCGAATACACAAAAAACTACGAAATCAAGTTCAGAACAAAAATTAGCCCTGAATTATTTGATCCATCCCACAATTTAACCTGGGGGAAATGAGCTCCCTACTCATAAAGAACAAGACTGCTTCCTTCGATGCTGATATCTTTTTTTGCATCCATAAAAAAGTTCAGGTGTAGAACTAATACCACAAAAGAAGAAAGATTTGCTTGCAACTTGCATAGAGATATATATAAATACCTAAAAAATGCTCTGAAACAGATAGAATCCTACCAAAAAAGTGCAGAAGAACTAAATAAACTCTGAGCCCAACGGTAGAGAGAGAAAGAGAGAAACCTGAGGAGAGGGGGCAATGGAGGGCAGGGCAGAAGAGGGAGACGGAGCTGGAAATGGAGATGGTGCCATGTCCATCGCACTATCGCTGTAGCAGTAAATGAGACGAC
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| CDS seq | AGTCCACTGACAAGGGTGTCCCAGGTGGTGGTTGCAGCTGTAAGGAATCATAGGCTGAAATTGCCTGACGATAGCTCACTCCTGCATGAGGTTTCAAAAGTGACTGAAGATGATTACAGGACTCAACTCACCACTCAATTCAGGTTCTTTGACAAGGCTGCCATCTTGTCCGACGAGATCTCGCCGGCGCAGTGGAGCCCGTGGAGGCTGTGCACGGTTTCGCAGGTGGAGGAGCTGAAGATCCTGCTGCGGATGTTCCCGGTCTGGGTGTCCATGGTCGTCTTCTTCGTGGTGACCGCGCAGATTACGTCGACGCTGATCGAGCAGGGCATGGCCATGGACGGCCGCGTCGGCCCGTTCACCCTTCCGGCCGCCTCAATCGCCACCTTCGACGTCATCAGCGTCCTCGTCTGGGTCCCCGTCTACGACACCGTGCTGGTGCCACTGGCACGGCGCGTCACCGGCAAGGACCGTGGCATCTCCCACCTGCAGCGCATTGGCGTCGGCCTCGCGCTCGCCGCGGTGGCCATGGCGTACTCGGCGGTGGTCGAGGCACGGCGGCTGGGGACGGCGCCAGCGCCGGTGAGCATCATGTGGCAGGCGCCGTCGTACCTGGTGCTGGGCGTGGCGGAGGCGTTCAGCGTGATCGGCATGATGGAGTTCTTCTACGAGCAGTCGCCGGAGTCGATGAAGAGCCTGTGCACGGCGCTCGGGCAGCTCGCCATCGCGGTCGCCAACTACCTCAACTCCGGCGTGCTCGTCGTGGTGGCGGCGGCCACCACGCGCGGCGGCGGGGCCGGCTGGATCCCGGACAACCTCGACGAGGGGCACCTGGACTACTTCTTCTGGATGATGGCTGTTGTTAGCGTCCTCAACCTGCTGCACTTCTTGCATTGCTCAATCAGATATAGAGCCAATAACAACACGCTGTCGTCTTGA
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| Protein seq | SPLTRVSQVVVAAVRNHRLKLPDDSSLLHEVSKVTEDDYRTQLTTQFRFFDKAAILSDEISPAQWSPWRLCTVSQVEELKILLRMFPVWVSMVVFFVVTAQITSTLIEQGMAMDGRVGPFTLPAASIATFDVISVLVWVPVYDTVLVPLARRVTGKDRGISHLQRIGVGLALAAVAMAYSAVVEARRLGTAPAPVSIMWQAPSYLVLGVAEAFSVIGMMEFFYEQSPESMKSLCTALGQLAIAVANYLNSGVLVVVAAATTRGGGAGWIPDNLDEGHLDYFFWMMAVVSVLNLLHFLHCSIRYRANNNTLSS |
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| Function | Protein NRT1/ PTR FAMILY 8.3 [UniProtKB/Swiss-Prot:P46032] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0110800 | OsNip_10t0110800-01 | Chr10 | 771699 | 776341 | - | RAP2018-11-26 | ||
| CDS seq | ATGGAGGCAGGGGCAGCAGATGAGGAGACGCCACTGATTCAGCAGCTGCCTCCGGAGGAACAATGTTCACAATACACATGTGATGGAACAGTTAATAGTGACAAAAAGCCTGCACTGAAGCAGAGTACAGGGCATTGGAGAGCATGCTTCTTCATTTTAGGTGCTCAATTCGCTGAAACCTTGTGCTTCTTCATGGTTTCGAAGAACTTAGTCATGTACCTCACGAGTGCGCTGCACGAAAGCAACATCGACGCTGCACAAAGTGTGTCTATTTGGATCGGCACTTCCTTCTTCACACCACTCATTGGAGCCTTCTTGGCTGATACATATTGGGGAAGATACTGGACGACAGTTATTTCCCTCTTTATTATCATCATCGTAAGTGCAACAAAACAGATCAGTAGCAACTGA
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| Protein seq | MEAGAADEETPLIQQLPPEEQCSQYTCDGTVNSDKKPALKQSTGHWRACFFILGAQFAETLCFFMVSKNLVMYLTSALHESNIDAAQSVSIWIGTSFFTPLIGAFLADTYWGRYWTTVISLFIIIIVSATKQISSN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0110800 | OsNip_10t0110800-02 | Chr10 | 771731 | 774213 | - | RAP2018-11-26 | ||
| CDS seq | AGTCCACTGACAAGGGTGTCCCAGGTGGTGGTTGCAGCTGTAAGGAATCATAGGCTGAAATTGCCTGACGATAGCTCACTCCTGCATGAGGTTTCAAAAGTGACTGAAGATGATTACAGGACTCAACTCACCACTCAATTCAGGTTCTTTGACAAGGCTGCCATCTTGTCCGACGAGATCTCGCCGGCGCAGTGGAGCCCGTGGAGGCTGTGCACGGTTTCGCAGGTGGAGGAGCTGAAGATCCTGCTGCGGATGTTCCCGGTCTGGGTGTCCATGGTCGTCTTCTTCGTGGTGACCGCGCAGATTACGTCGACGCTGATCGAGCAGGGCATGGCCATGGACGGCCGCGTCGGCCCGTTCACCCTTCCGGCCGCCTCAATCGCCACCTTCGACGTCATCAGCGTCCTCGTCTGGGTCCCCGTCTACGACACCGTGCTGGTGCCACTGGCACGGCGCGTCACCGGCAAGGACCGTGGCATCTCCCACCTGCAGCGCATTGGCGTCGGCCTCGCGCTCGCCGCGGTGGCCATGGCGTACTCGGCGGTGGTCGAGGCACGGCGGCTGGGGACGGCGCCAGCGCCGGTGAGCATCATGTGGCAGGCGCCGTCGTACCTGGTGCTGGGCGTGGCGGAGGCGTTCAGCGTGATCGGCATGATGGAGTTCTTCTACGAGCAGTCGCCGGAGTCGATGAAGAGCCTGTGCACGGCGCTCGGGCAGCTCGCCATCGCGGTCGCCAACTACCTCAACTCCGGCGTGCTCGTCGTGGTGGCGGCGGCCACCACGCGCGGCGGCGGGGCCGGCTGGATCCCGGACAACCTCGACGAGGGGCACCTGGACTACTTCTTCTGGATGATGGCTGTTGTTAGCGTCCTCAACCTGCTGCACTTCTTGCATTGCTCAATCAGATATAGAGCCAATAACAACACGCTGTCGTCTTGA
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| Protein seq | SPLTRVSQVVVAAVRNHRLKLPDDSSLLHEVSKVTEDDYRTQLTTQFRFFDKAAILSDEISPAQWSPWRLCTVSQVEELKILLRMFPVWVSMVVFFVVTAQITSTLIEQGMAMDGRVGPFTLPAASIATFDVISVLVWVPVYDTVLVPLARRVTGKDRGISHLQRIGVGLALAAVAMAYSAVVEARRLGTAPAPVSIMWQAPSYLVLGVAEAFSVIGMMEFFYEQSPESMKSLCTALGQLAIAVANYLNSGVLVVVAAATTRGGGAGWIPDNLDEGHLDYFFWMMAVVSVLNLLHFLHCSIRYRANNNTLSS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0110800 | OsNip_10t0110800-03 | Chr10 | 771731 | 776296 | - | IsoSeq | ||
| CDS seq | ATGATTACAGGACTCAACTCACCACTCAATTCAGGTTCTTTGACAAGGCTGCCATCTTGTCCGACGAGATCTCGCCGGCGCAGTGGAGCCCGTGGAGGCTGTGCACGGTTTCGCAGGTGGAGG |
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| Protein seq | MITGLNSPLNSGSLTRLPSCPTRSRRRSGARGGCARFRRWR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr10 | 774069 | 774905 | - | OsNip_10t0110800-01 | OsNip_10t0110800-01,OsNip_10t0110800-03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.853107 | 2.250106 | 0.562060 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0235700 | RBH | 0.000000 | 0.000000 | 1.675213 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g02220 | RBH | 1.907980 | 1.245963 | 0.141811 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0110800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0000500 | RBH | 0.568702 | 0.0 | 1.456084 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0000500 | RBH | 0.430555 | 0.0 | 0.847521 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0000510 | RBH | 2.272503 | 0.000000 | 4.659052 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0000460 | SBH | 1.370325 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0000430 | RBH | 5.539207 | 0.0 | 4.440963 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0013200 | RBH | 8.519718 | 0.045973 | 1.030231 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0000470 | RBH | 0.174504 | 0.0 | 0.219673 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0013100 | RBH | 6.9686875 | 0.0215135 | 1.0891825 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0000470 | RBH | 0.127348 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0000510 | RBH | 1.215366 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0000470 | RBH | 6.427152 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0000440 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0000460 | RBH | 0.440640 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G000460 | RBH | 0.841792 | 0.0 | 0.480383 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0000450 | RBH | 16.847605 | 9.358546 | 5.213346 |
