Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_09g0507100 OGI:09057340 | 16/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr09:19642782-19648233
Gene Symbol SPL18, OsSPL18
DNA seq

TCACTGATGAAGATCACTCACTCACTGCCTATACAACACTACACAACTCTGCAGTCTGCACTTGCCTCCTCTGCAAAAACCAAGTAGGAGTAGTACTGACTCACTGCCTACCACTACTAGTCTCCTCCTTGGTGGTAGAGTATTCTTGTTGTGTTGTGCACTTGTGCTGCATCTGTGCAGTGTGCTGTGTTGTGTAGCAGCAGCAGCTACAAGTAGCAAAGCCAAGCACAACCACCATCAATTTCACTTGCTCATTCAGCAGCAGCAGCAGCAGCATCAGCATCAGCATCAGCTGCAGCTGCAGCTGCTGGTCATCTCTCTTCTCCTCTGCTGTGTGAAGAGAGTGTGTTTTTGTGTGTGTGTTTCAGTGTGTCTCTCATCCCTATCAGGATAAGCTTCTGCTTCTGCTGCTGATCTGTTGCATTTGCCCTGTTCTTGGCGCTCGATTTGTTGGTATCTCGGTGTTTGCGATCAATAATTCGTTGGTTCGTTCGTTCGCCGCTAGTTGCCACCTTCGCCGCGGCATGTCCGTGGGATGAGAGCGACGGGCGGTGGCGACAAACCGGCCATTCCTCGTCCTCCTCCTCCGGTGGTGGTGGTGGCCTCACCGTGAAAGCGAGAGGTAGACGACGAGGTGTCCAAGTTGCCAACAAGTGGCGTGGAGTGGAGCCGTGTCGTGCCATGGATTGGGATCTCAAGATGCCTGTTTCTTGGGACCTGGCCGAGCTGGAGCACAACGCCGTGCCGAACATGGCGGCGGCGGCGAGCGCGGCGGAGCCGGGCATTGCCGCGGTGGCGGCGTCGCGCGGGGCGCCGGGCCGGCCGGAGTGCTCTGTCGACCTCAAGCTCGGCGGGCTCGGCGAGTTCGGCGCCGCGGACGCGCTCAAGGAGCCCGCCGCCGCGGCGAAGGCGCCGGTGTCGAGCGCCGCCGCCGCCGCCTCGGTGGCGAAGGTGCCGCCGTCCACGAGCACGCTGAAGCGGCCGCGCGGCGGGGGCGGCGGCGGCGGCGGGCAGTGCCCGTCGTGCGCCGTGGACGGCTGCAAGGCCGACCTGAGCAAGCACCGCGACTACCACCGGCGGCACAAGGTGTGCGAGCCGCACTCCAAGACTCCCGTCGTCGTCGTCTCCGGCCGCGAGATGCGCTTCTGCCAGCAGTGCAGCAGGTAAACCAATCTGACGAACCAAAAAAAGAAAAAAAAGCACAAGAAAATCGGGTAAAATTTGGCAAATTTTCAGTTCATATCCAATTCTAGCCATGCTAAATTCAGCACATTGATTAAATTCCCGAATCGATGACTGCCCGCAATCGTGTCACGTCGGATTGTGATTTGCAAAAGATCATTGCCTGAATTGTGCGATGGAAAAAAATAATAAAAATTGGCCGCAACCAAGAACACACACTGACTGATTGGGGTTCAGTTTATCTCTTCTACATCCTTTTCTTTTCACTGCTGATTATTCCCTTTATTCAAAGTGAATAGGCCAAATCAGTTCTTTCTTTGGCCTCGGCTTTCCCTTTCCCTGGCACAATTGTTCCAAGAAAATTTATCACTAGAGATTAGATGAGATGAGATGAGATGAACATTTTTCTGGCTGTCTTGTTCCAAGGATGCACAGCTTTACCTTTTCCGGCGCCAACTTTTCAGCCTTTTCATAAGATGTACCACAAGTTTTTCCCCTGTTGCACTTTACCTTGGCAACCGGTATACCTGAATTATAACCTCCTCTTTTCCTATTTCTGCACTAGTAACTTTCTGACCCATCAGTGGTAATTATTATCCCTAAAAAGCCACTGATGCATTTCATGTGCCAAAGATCAGATGGAGTTGGGTCTTTTGTTATGATACCTGCTACATGTGCACATTATCCCTGGGGCCACTTTCTTCATGGTTTTTGTTTGAAAGTGATGAATGAACTGGAAATTCGTGAATTTTACGTTGTATCGCCGAAGAAATTTATTATGTTTCACGGGTAGTGTCATTGACATCAGGTAGCAATTCTTTTGTGGTCAGCTGCAAAATTTAAGAGTAAAAATGGAGTTCCAACACATTAGGTAGGTAGTTTAGGATCTATGTGATTTCTTTTTTTTTTTTTTTGCTTTGAGGAGTTTAAGAATCAGAATGTCTCTTAGTTAAGTAATACCCTGGTTGATTAGGCCCCATTTCTGACATGTTTGCCTAGCTCCCTTTTCTGCTTAGATCTTTCCTTTCTGAATCAGTGACCAGATCCATACAAGTTATTTCACTTTTTTCCGTGGATCCTTGTGCAACAGTATTTATTATGAGGGACTGTTGATTTGTAAAGATGATATTGAACATGCAACCTGCTTTATATTATGGCTTGCTTTGCTTCAGGTTATTAGCTATGCTCTTTATTTAAGTTGTTGGGACCAACAAGGTTGCTGTTTGAAAGCTAACTACAGTCTGTATAGTGCATTCAACCAGATAACCCTTACAAATACCAATGTCTACTCAATGGTTAACTAATTACAAATCAGATAAATACACCCAATAGGTTGCCTTACCCCTTTTTGTGTGTTTTGGGGTTGGTTTGTGTGCACCTTTTCAAATTCGATCAGTATTTTTTGGGTAAGATATCAGTGAAATTTTGACCGATTTGGCTGTACAGTAAAAGCTATATTTAATTTTCAAGAGTATATCTTGTTCCAGGAATATGAACATCATCCTTGTTATTTGACTACTGAACTGAAATAAAACAGTTGTTAAAGCATGGTCGTCCTTTTCCAGCTGAATCATTTGCTTCCACAAACAAAAAAAAAAAAGAAAATCCTTTTCCTTCAGGACATAACAACTACTGTAGCTGCTTTTCTAAATTAGTTCCAAGCATAATGCTTACTCTTACCAACTGAGTATAATGTGGTCCACTTTCTGCCGATATGAATCCTACTCTCTGGAGCTAATGCGCGCCTCCAATTTGTCAATTTTTTATTTTATAAAAATACTACGCAAGCCGAGATCTTGTATTAGGTTCATCTCTAGTTCAGTTGTGGACTTTTTGTGATGTCCTTTTACGTTGTTGAGCTATAATGAGCAAATTACCTCTGCATCATGTTACCTTTAACACAGTACAAATATTATCAGCCAATCATTCGCCACCTCCTGAAAAATTTATATCCTGTGGGGACTCCTTTGCAACGATTAATTGCCCTCTCCCAGATGCCCAGTGGAGCAAAATTAAAATGCCATATTGCTTGCCAGTCTTTATCAAGTATTCCTCAGTGCTCATTGCAAAAAAAAAAGGTGATCCTCATGAAGCAACAGGCTGGTGGGATGCATACTGCCATATACCTGCTGGAACCATTATACCGTGGTCCAAATGTCCCAGAGGCCAAAGTTGTACTGTTTTTTTTTCTCTTGTGCTTGACAGGCCAGTACAAAACTTTTATATAACTGAATCCCCATGCATTGAAATTATTAGCTGACACATTGAAATACGATTGGTCCAGCCGTGTACCATTTTATTTAATTGAAGCTGGGTGCTATTATTGAATATTCAGCAAATAAATACACGTATCATTCCTCTTCTTTTAAATAGCATCTGAGCCCCATTAATTTTGAAGTATTCGTATGTACTGTATTATTTATCTCTGAGATAAAACAAGTACATCTGAATATGTTTTTGCTTCAATTAGAACTCACACTACCTTTTCAGCATTAAAGCAGCTCTATTTTATTTTCCCTTTCACTTCCTAGTATAACAATCAAGCTTTGTTTTATAAAGATTTATTAAGTACTAAAAAAGGATTTTGATGTTTGGAATTCTCATCATAGCTTTTCATTTCTGTAGGTTTCACTTGCTTGGGGAGTTTGATGAGGCTAAGCGTAGTTGTAGAAAACGCTTGGATGGGCACAATCGACGCCGCAGGAAGCCACAGGCAGATAGCATGAGTTCTGGCAGCTTTATGACAAGTCAACAAGGTATTCTTGTTTAAAAACTGTTGTTTTGAAGAGTATGTTGAATGCTAATGACATAGTTGAAAATAAATTATGTAATGTCCTCTCTTGCTTAAACCAGAAATCTGAGCTGTAAAGCAAACAAAAAGTAATGTATATCTAGACTCCACCAATATGCCACTGCAAATTATACCCCAATTGCTCATAAAATGTAGCATGTAGAACCGAGGTTCAGTAATCTACCTGATACTTACGTATTCCGCAAGTTCTACTAGTTTCCTCCTGTGTAAATCGATGATAGGTTTGCCTATATATTACATGGAGCTTAGAGAGCACAATGCAACCCTTATGTTTCAGTTAAAACAGCAAAAAAAATTATATCTTGTTGTGCATAGTATTATGTTTCAATTGATATTTACCTTTCTGATACTATTGTCAGATTTATTATTATTATTATCATATATGAATGGGTTATTGTGTTTAGTGGGCATGGTGAGTTAATCACTCAAACTTAATTCAAGAATTGGAATCTGAGATGAAATTCCAGATACCCACATTAACTGGAGCTTTAAAGTTAAATCAACGGACTGAATTTCTTCTTCCACACCGAACAATTTAGTAGCTGTTCTAGGGCTTGTTTCATTCATTCATTTATTTATTTTACATAATGGAGATTTCATTTCGTCGGATTTGTTTTAATGACGGCCATTTTAGTTCTGTATTCAAATGTAGGGACAAGGTTCGCGTCCTTCACTCCTCCAAGACCAGAGCCAAGCTGGCCTGGGATCATCAAATCCGAGGAGACCCCATATTACAGCCATCATCACCACCCTCATCCGGTGATGACCAGCCGGCAGCCGCATTTCGTCGGCTCGCCGTCGTCGGCGACGACGGCGGCGTTCTCCCCCAAGGAAGGCCGGCGGTTCCCGTTCCTCCATGAGGGCGATCAGATAAGCTTCGGCGGCGGCGGTGGCGCGGCGGCGGCGGCGACGCTGGAGATCTCGGTGTGCCAGACCACCGTCGTCGCGCCGCCGCCACCGGAGAGCAGCAGCAGCAACAAGATGTTCTCCTCCGACGGGCTGACGACGGCGACGACGACGACGACCACCGCCCACCACCACCACCACCACCACCAAGTGCTCGACTCCGATTGTGCTCTCTCTCTTCTGTCATCCCCGGCCAACTCCTCCAGCGTCGACGTCAGCCGGATGGTCCAGCCGTCACCGGCGGCGGCGGCGGGAGCCGAGCACCACCACCACCACCAAATCCCCATGGCGCAGCCGTTGGTCCCCAACCTGCAGCAGCAGTTCGGCGGCAGCTCGCCGTGGTTCGCCAGCTCGCCCGCCGCCGCGGCCGTCGCCGGCGGCGGGTTCGCCTGCCCGAGCATGGACAGCGAGCAGCAGCAGCAGCAGCAGCTGAACGCCGTGCTGGTGCCGGGCTCCAACGAGAACGAGATGAACTACCACGGCATGTTTCACGTCGGCGGCGAGGGCTCCTCCGACGGCACGTCGCCGTCGCTCCCATTCTCGTGGCAGTAG

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CDS seq

ATGGATTGGGATCTCAAGATGCCTGTTTCTTGGGACCTGGCCGAGCTGGAGCACAACGCCGTGCCGAACATGGCGGCGGCGGCGAGCGCGGCGGAGCCGGGCATTGCCGCGGTGGCGGCGTCGCGCGGGGCGCCGGGCCGGCCGGAGTGCTCTGTCGACCTCAAGCTCGGCGGGCTCGGCGAGTTCGGCGCCGCGGACGCGCTCAAGGAGCCCGCCGCCGCGGCGAAGGCGCCGGTGTCGAGCGCCGCCGCCGCCGCCTCGGTGGCGAAGGTGCCGCCGTCCACGAGCACGCTGAAGCGGCCGCGCGGCGGGGGCGGCGGCGGCGGCGGGCAGTGCCCGTCGTGCGCCGTGGACGGCTGCAAGGCCGACCTGAGCAAGCACCGCGACTACCACCGGCGGCACAAGGTGTGCGAGCCGCACTCCAAGACTCCCGTCGTCGTCGTCTCCGGCCGCGAGATGCGCTTCTGCCAGCAGTGCAGCAGGTTTCACTTGCTTGGGGAGTTTGATGAGGCTAAGCGTAGTTGTAGAAAACGCTTGGATGGGCACAATCGACGCCGCAGGAAGCCACAGGCAGATAGCATGAGTTCTGGCAGCTTTATGACAAGTCAACAAGGGACAAGGTTCGCGTCCTTCACTCCTCCAAGACCAGAGCCAAGCTGGCCTGGGATCATCAAATCCGAGGAGACCCCATATTACAGCCATCATCACCACCCTCATCCGGTGATGACCAGCCGGCAGCCGCATTTCGTCGGCTCGCCGTCGTCGGCGACGACGGCGGCGTTCTCCCCCAAGGAAGGCCGGCGGTTCCCGTTCCTCCATGAGGGCGATCAGATAAGCTTCGGCGGCGGCGGTGGCGCGGCGGCGGCGGCGACGCTGGAGATCTCGGTGTGCCAGACCACCGTCGTCGCGCCGCCGCCACCGGAGAGCAGCAGCAGCAACAAGATGTTCTCCTCCGACGGGCTGACGACGGCGACGACGACGACGACCACCGCCCACCACCACCACCACCACCACCAAGTGCTCGACTCCGATTGTGCTCTCTCTCTTCTGTCATCCCCGGCCAACTCCTCCAGCGTCGACGTCAGCCGGATGGTCCAGCCGTCACCGGCGGCGGCGGCGGGAGCCGAGCACCACCACCACCACCAAATCCCCATGGCGCAGCCGTTGGTCCCCAACCTGCAGCAGCAGTTCGGCGGCAGCTCGCCGTGGTTCGCCAGCTCGCCCGCCGCCGCGGCCGTCGCCGGCGGCGGGTTCGCCTGCCCGAGCATGGACAGCGAGCAGCAGCAGCAGCAGCAGCTGAACGCCGTGCTGGTGCCGGGCTCCAACGAGAACGAGATGAACTACCACGGCATGTTTCACGTCGGCGGCGAGGGCTCCTCCGACGGCACGTCGCCGTCGCTCCCATTCTCGTGGCAGTAG

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Protein seq

MDWDLKMPVSWDLAELEHNAVPNMAAAASAAEPGIAAVAASRGAPGRPECSVDLKLGGLGEFGAADALKEPAAAAKAPVSSAAAAASVAKVPPSTSTLKRPRGGGGGGGGQCPSCAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRSCRKRLDGHNRRRRKPQADSMSSGSFMTSQQGTRFASFTPPRPEPSWPGIIKSEETPYYSHHHHPHPVMTSRQPHFVGSPSSATTAAFSPKEGRRFPFLHEGDQISFGGGGGAAAAATLEISVCQTTVVAPPPPESSSSNKMFSSDGLTTATTTTTTAHHHHHHHQVLDSDCALSLLSSPANSSSVDVSRMVQPSPAAAAGAEHHHHHQIPMAQPLVPNLQQQFGGSSPWFASSPAAAAVAGGGFACPSMDSEQQQQQQLNAVLVPGSNENEMNYHGMFHVGGEGSSDGTSPSLPFSWQ

Function Squamosa promoter-binding-like protein 18 [UniProtKB/Swiss-Prot:Q0J0K1]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_09g0507100 OsNip_09t0507100-00 Chr09 19643463 19648233 + RAP2018-11-26
CDS seq

ATGGATTGGGATCTCAAGATGCCTGTTTCTTGGGACCTGGCCGAGCTGGAGCACAACGCCGTGCCGAACATGGCGGCGGCGGCGAGCGCGGCGGAGCCGGGCATTGCCGCGGTGGCGGCGTCGCGCGGGGCGCCGGGCCGGCCGGAGTGCTCTGTCGACCTCAAGCTCGGCGGGCTCGGCGAGTTCGGCGCCGCGGACGCGCTCAAGGAGCCCGCCGCCGCGGCGAAGGCGCCGGTGTCGAGCGCCGCCGCCGCCGCCTCGGTGGCGAAGGTGCCGCCGTCCACGAGCACGCTGAAGCGGCCGCGCGGCGGGGGCGGCGGCGGCGGCGGGCAGTGCCCGTCGTGCGCCGTGGACGGCTGCAAGGCCGACCTGAGCAAGCACCGCGACTACCACCGGCGGCACAAGGTGTGCGAGCCGCACTCCAAGACTCCCGTCGTCGTCGTCTCCGGCCGCGAGATGCGCTTCTGCCAGCAGTGCAGCAGGTTTCACTTGCTTGGGGAGTTTGATGAGGCTAAGCGTAGTTGTAGAAAACGCTTGGATGGGCACAATCGACGCCGCAGGAAGCCACAGGCAGATAGCATGAGTTCTGGCAGCTTTATGACAAGTCAACAAGGGACAAGGTTCGCGTCCTTCACTCCTCCAAGACCAGAGCCAAGCTGGCCTGGGATCATCAAATCCGAGGAGACCCCATATTACAGCCATCATCACCACCCTCATCCGGTGATGACCAGCCGGCAGCCGCATTTCGTCGGCTCGCCGTCGTCGGCGACGACGGCGGCGTTCTCCCCCAAGGAAGGCCGGCGGTTCCCGTTCCTCCATGAGGGCGATCAGATAAGCTTCGGCGGCGGCGGTGGCGCGGCGGCGGCGGCGACGCTGGAGATCTCGGTGTGCCAGACCACCGTCGTCGCGCCGCCGCCACCGGAGAGCAGCAGCAGCAACAAGATGTTCTCCTCCGACGGGCTGACGACGGCGACGACGACGACGACCACCGCCCACCACCACCACCACCACCACCAAGTGCTCGACTCCGATTGTGCTCTCTCTCTTCTGTCATCCCCGGCCAACTCCTCCAGCGTCGACGTCAGCCGGATGGTCCAGCCGTCACCGGCGGCGGCGGCGGGAGCCGAGCACCACCACCACCACCAAATCCCCATGGCGCAGCCGTTGGTCCCCAACCTGCAGCAGCAGTTCGGCGGCAGCTCGCCGTGGTTCGCCAGCTCGCCCGCCGCCGCGGCCGTCGCCGGCGGCGGGTTCGCCTGCCCGAGCATGGACAGCGAGCAGCAGCAGCAGCAGCAGCTGAACGCCGTGCTGGTGCCGGGCTCCAACGAGAACGAGATGAACTACCACGGCATGTTTCACGTCGGCGGCGAGGGCTCCTCCGACGGCACGTCGCCGTCGCTCCCATTCTCGTGGCAGTAG

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Protein seq

MDWDLKMPVSWDLAELEHNAVPNMAAAASAAEPGIAAVAASRGAPGRPECSVDLKLGGLGEFGAADALKEPAAAAKAPVSSAAAAASVAKVPPSTSTLKRPRGGGGGGGGQCPSCAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRSCRKRLDGHNRRRRKPQADSMSSGSFMTSQQGTRFASFTPPRPEPSWPGIIKSEETPYYSHHHHPHPVMTSRQPHFVGSPSSATTAAFSPKEGRRFPFLHEGDQISFGGGGGAAAAATLEISVCQTTVVAPPPPESSSSNKMFSSDGLTTATTTTTTAHHHHHHHQVLDSDCALSLLSSPANSSSVDVSRMVQPSPAAAAGAEHHHHHQIPMAQPLVPNLQQQFGGSSPWFASSPAAAAVAGGGFACPSMDSEQQQQQQLNAVLVPGSNENEMNYHGMFHVGGEGSSDGTSPSLPFSWQ

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Gene Transcript Chromosome Start End Strand Source
OsNip_09g0507100 OsNip_09t0507100-01 Chr09 19642782 19643964 + IsoSeq
CDS seq

ACTGATGAAGATCACTCACTCACTGCCTATACAACACTACACAACTCTGCAGTCTGCACTTGCCTCCTCTGCAAAAACCAAGTAGGAGTAGTACTGACTCACTGCCTACCACTACTAGTCTCCTCCTTGGTGGTAGAGTATTCTTGTTGTGTTGTGCACTTGTGCTGCATCTGTGCAGTGTGCTGTGTT

Protein seq

TDEDHSLTAYTTLHNSAVCTCLLCKNQVGVVLTHCLPLLVSSLVVEYSCCVVHLCCICAVCCV

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 1.005480

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_08g0531600 RBH 0.0 0.0 0.707011
Nipponbare | IRGSP 1.0 | MSU LOC_Os09g32944 RBH 0.0 0.0 0.000000
Nipponbare | IRGSP 1.0 | RAP-db Os09g0507100 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_09g0015890 RBH 0.0 0.0 0.315226
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_09g0015900 RBH 0.0 0.0 0.405231
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_09g0016120 RBH 0.0 0.0 1.469044
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_09g0015890 RBH 0.0 0.000000 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_09g0016030 RBH 0.0 0.0 0.000000
Minghui 63 | MH63RS3 | HZAU OsMH63_09G0328900 RBH 1.5869705 1.0449665 7.602891
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_09g0015890 RBH 0.000000 0.0 0.000000
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_09G0318300 RBH 1.6166035 1.4782305 21.6536035
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_09g0015870 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_09g0015710 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_09g0015800 RBH 0.0 4.397852 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_09g0015660 RBH 0.000000 0.0 0.540321
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_09g0015770 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_09G016170 RBH 0.0 0.0 0.557359
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_09g0015960 RBH 0.0 0.0 1.585808
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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