Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_09g0015960 | OGI:09057340 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr09:20075417-20080207 | ||||||||
| Gene Symbol | SPL18, OsSPL18 | ||||||||||
| DNA seq | atggattgggatctcaagatgcctgtttcttgggacctggccgagctggagcacaacgccgtgccgaacatggcggcggcggcgagcgcggcggagccgggcattgccgcggtggcggcgtcgcgcggggcgccgggccggccggagtgctctgtcgacctcaagctcggcgggctcggcgagttcggcgccgcggacgcgctcaaggagcccgccgccgcggcgaaggcgccggtgtcgagcgccgccgccgccgcctcggtggcgaaggtgccgccgtccacgagcacgctgaagcggccgcgcggcgggggcggcggcggcggcgggcagtgcccgtcgtgcgccgtggacggctgcaaggccgacctgagcaagcaccgcgactaccaccggcggcacaaggtgtgcgagccgcactccaagactcccgtcgtcgtcgtctccggccgcgagatgcgcttctgccagcagtgcagcaggtaaaccaatctgacgaaccaaaaaaagaaaaaaaaagcacaagaaaatcgggtaaaatttggcaaattttcagttcatatccaattctagccatgctaaattcagcacattgattaaattcccgaatcgatgactgcccgcaatcgtgtcacgtcggattgtgatttgcaaaagatcattgcctgaattgtgcgatggaaaaaaataataaaaattggccgcaaccaagaacacacactgactgattggggttcagtttatctcttctacatccttttcttttcactgctgattattccctttgttcaaagtgaataggccaaatcagttctttctttggcctcggctttccctttccctggcacaattgttccaagaaaatttatcactagagattagatgagatgagatgagatgaacatttttctggctgtcttgttccaaggatgcacagctttaccttttccggcgccaacttttcagccttttcatatgatgtaccacaagtttttcccctgttgcactttaccttggcaaccggtatacctgaattataacctcctcttttcctatttctgcactagtaactttctgacccatcagtggtaattattatccctaaaaagccactgatgcatttcatgtgccaaagatcagatggagttgggtcttttgttatgatacctgctacatgtgcacattatccctggggccactttcttcatggtttttgtttgaaagtgatgaatgaactggaaattcgtgaattttacgttgtatcgccgaagaaatttattatgtttcacgggtagtgtcattgacatcaggtagcaattcttttgtggtcagctgcaaaatttaagagtaaaaatggagttccaacacattaggtaggtagtttaggatctatgtgattccttttttttttttttgctttgaggagtttaagaatcagaatgtctcttagttaagtaataccctggttgattaggccccatttctgacatgtttgcctagctcccttttctgcttagatctttcctttctgaatcagtgaccagatccatacaagttatttcacttttttccgtggatccttgtgcaacagtatttattatgagggactgttgatttgtaaagatgatattgaacatgcaacctgctttatactatggcttgctttgcttcaggttattagctatgctctttatttaagttgttgggaccaacaaggttgctgtttgaaagctaactacagtctgtatagtgcattcaaccagataacccttacaaataccaatgtctactcaatggttaactaattacaaatcagataaatacacccaataggttgccttacccctttttgtgtgttttggggttggtttgtgtgcaccttttcaaattcgatcagtattttttgggtaagatatcagtgaaattttgaccgatttggctgtacagtaaaagctatatttaattttcaagagtatatcttgttccaggaatatgaacatcatccttgttatttgacaactgaactgaaataaaacagttgttaaagcatggtcgtccttttccagctgaatcatttgcttccacaaacaaaaaaaaaaaaagaaaatccttttccttcaggacataacaactactgtagctgcttttctaaattagttccaagcataatgcttactcttaccaactgagtataatgtggtccactttctgccgatatgaatcctactctctggagctaatgcgcgcctccaatttgtcaattttttattttataaaaatactacgcaagccgagatcttgtattaggttcatctctagttcagttgtggactttttgtgatgtccttttacgttgttgagctataatgagcaaattacctctgcatcatgttacctttaacacagtacaaatattatcagccaatcattcgccacctcctgaaaaatttatatcctgtggggactcctttgcaacgattaattgccctctcccagatgcccagtggagcaaaattaaaatgccatattgcttgccagtctttatcaagtattcctcagtgctcattgcataaaaaaaaggtgatcctcatgaagcaacaggctggtgcgatgcatactgccatatacctgctggaaccattataccgtggtccaaatgtcccagaggccaaagttgtactgtttttttttctcttgtgcttgacaggccagtacaaaacttttatataactgaatccccatgcattgaaattgttagctgacacattgaaatacgattggtccagccgtgtaccattttatttaattgaagctgggtgctattattgaatattcagcaaataaatacacgcatcattcctcttcttttaaatagcatctgagccccattaattttgaagtattcgtatgtactgtattatttatctctgagataaaacaagtacatctgaatatgtttttgcttcaattagaactcacactaccttttcagcattaaagcagctctattttattttccctttcacttcctagtataacaatcaagctttgttttataaagatttattaagtattaaaaaaggattttgatgtttggaattctcatcatagcttttcatttctgtaggtttcacttgcttggggagtttgatgaggctaagcgtagttgtagaaaacgcttggatgggcacaatcgacgccgcaggaagccacaggcagatagcatgagttctggcagctttatgacaagtcaacaaggtattcttgtttaaaaactgttgttttgaagagtatgttgaatgctaatgacatagttgaaaataaattatgtaatgtcctctcttgcttaaaccagaaatctgagctgtaaagcaaacaaaaagtaatgtatatctagactccaccaatatgccactgcaaattataccccaattgctcataaaatgtagcatgtagaaccgaggttcagtaatctacctgatacttacgtattccgcaagttctactagtttcctcctgtgtaaatcgatgataggtttgcctatatattacatggagcttagagagcacaatgcaacccttatgtttcagttaaaacagcAaaaaaaattatatcttgttgtgcatagtattatgtttcaattgatatttacctttctgatactattgtcagatttattattattattatcatatatgaatgggttattgtgtttagtgggcatggtgagttaatcactcaaacttaattcaagaattggaatctgagatgaaattccagatacccacattaactggagctttaaagttaaatcaacggactgaatttcttcttccacaccgaacaaatttagtagctgttctagggcttatttcattcattcatttatttattttacataatggagatttcatttcgtcggatttgttttaatgacggccattttagttctgtattcaaatgtagggacaaggttcgcgtccttcactcctccaagaccagagccaagctggcctgggatcatcaaatccgaggagaccccatattacagccatcaccaccaccctcatccggtgatgaccagccggcagccgcatttcgtcggctcgccgtcgtcggcgacgacggcggcgttctcccccaaggaaggccggcggttcccgttcctccatgagggcgatcagataagcttcggcggcggcggtggcgcggcggcggcggcgacgctggagatctcggtgtgccagaccaccgtcgtcgcgccgccgccaccggagagcagcagcagcaacaagatgttctcctccgacgggctgacgatggcgacgacgacgacgaccaccgcccaccaccaccaccaccaccaccaagtgctcgactccgattgtgctctctctcttctgtcatccccggccaactcctccagcgtcgacgtcagccggatggtccagccgtcaacggcggcggcggcgggagccgagcaccaccaccaccaccaccaccaccaccaccaccaaatccccatggcgcagccgttggtccccaacctgcagcagcagttcggcggcagctcgccgtggttcgccagctcgcccgccgccgcggccgtcgccggcggcgggttcgcctgcccgagcatggacagcgagcagcagcagcagcagcagctgaacgccgtgctggtgccgggctccaacgagaacgagatgaactaccacggcatgtttcacgtcggcggcgagggctcctccgacggcacgtcgccgtcgctcccattctcgtggcagtag
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| CDS seq | atggattgggatctcaagatgcctgtttcttgggacctggccgagctggagcacaacgccgtgccgaacatggcggcggcggcgagcgcggcggagccgggcattgccgcggtggcggcgtcgcgcggggcgccgggccggccggagtgctctgtcgacctcaagctcggcgggctcggcgagttcggcgccgcggacgcgctcaaggagcccgccgccgcggcgaaggcgccggtgtcgagcgccgccgccgccgcctcggtggcgaaggtgccgccgtccacgagcacgctgaagcggccgcgcggcgggggcggcggcggcggcgggcagtgcccgtcgtgcgccgtggacggctgcaaggccgacctgagcaagcaccgcgactaccaccggcggcacaaggtgtgcgagccgcactccaagactcccgtcgtcgtcgtctccggccgcgagatgcgcttctgccagcagtgcagcaggtttcacttgcttggggagtttgatgaggctaagcgtagttgtagaaaacgcttggatgggcacaatcgacgccgcaggaagccacaggcagatagcatgagttctggcagctttatgacaagtcaacaagggacaaggttcgcgtccttcactcctccaagaccagagccaagctggcctgggatcatcaaatccgaggagaccccatattacagccatcaccaccaccctcatccggtgatgaccagccggcagccgcatttcgtcggctcgccgtcgtcggcgacgacggcggcgttctcccccaaggaaggccggcggttcccgttcctccatgagggcgatcagataagcttcggcggcggcggtggcgcggcggcggcggcgacgctggagatctcggtgtgccagaccaccgtcgtcgcgccgccgccaccggagagcagcagcagcaacaagatgttctcctccgacgggctgacgatggcgacgacgacgacgaccaccgcccaccaccaccaccaccaccaccaagtgctcgactccgattgtgctctctctcttctgtcatccccggccaactcctccagcgtcgacgtcagccggatggtccagccgtcaacggcggcggcggcgggagccgagcaccaccaccaccaccaccaccaccaccaccaccaaatccccatggcgcagccgttggtccccaacctgcagcagcagttcggcggcagctcgccgtggttcgccagctcgcccgccgccgcggccgtcgccggcggcgggttcgcctgcccgagcatggacagcgagcagcagcagcagcagcagctgaacgccgtgctggtgccgggctccaacgagaacgagatgaactaccacggcatgtttcacgtcggcggcgagggctcctccgacggcacgtcgccgtcgctcccattctcgtggcagtag
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| Protein seq | MDWDLKMPVSWDLAELEHNAVPNMAAAASAAEPGIAAVAASRGAPGRPECSVDLKLGGLGEFGAADALKEPAAAAKAPVSSAAAAASVAKVPPSTSTLKRPRGGGGGGGGQCPSCAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRSCRKRLDGHNRRRRKPQADSMSSGSFMTSQQGTRFASFTPPRPEPSWPGIIKSEETPYYSHHHHPHPVMTSRQPHFVGSPSSATTAAFSPKEGRRFPFLHEGDQISFGGGGGAAAAATLEISVCQTTVVAPPPPESSSSNKMFSSDGLTMATTTTTTAHHHHHHHQVLDSDCALSLLSSPANSSSVDVSRMVQPSTAAAAGAEHHHHHHHHHHHQIPMAQPLVPNLQQQFGGSSPWFASSPAAAAVAGGGFACPSMDSEQQQQQQLNAVLVPGSNENEMNYHGMFHVGGEGSSDGTSPSLPFSWQ |
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| Function | Squamosa promoter-binding-like protein 18 [UniProtKB/Swiss-Prot:Q0J0K1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_09g0015960 | OsNaBo_09g0015960.01 | Chr09 | 20075417 | 20080207 | + | NAM | ||
| CDS seq | atggattgggatctcaagatgcctgtttcttgggacctggccgagctggagcacaacgccgtgccgaacatggcggcggcggcgagcgcggcggagccgggcattgccgcggtggcggcgtcgcgcggggcgccgggccggccggagtgctctgtcgacctcaagctcggcgggctcggcgagttcggcgccgcggacgcgctcaaggagcccgccgccgcggcgaaggcgccggtgtcgagcgccgccgccgccgcctcggtggcgaaggtgccgccgtccacgagcacgctgaagcggccgcgcggcgggggcggcggcggcggcgggcagtgcccgtcgtgcgccgtggacggctgcaaggccgacctgagcaagcaccgcgactaccaccggcggcacaaggtgtgcgagccgcactccaagactcccgtcgtcgtcgtctccggccgcgagatgcgcttctgccagcagtgcagcaggtttcacttgcttggggagtttgatgaggctaagcgtagttgtagaaaacgcttggatgggcacaatcgacgccgcaggaagccacaggcagatagcatgagttctggcagctttatgacaagtcaacaagggacaaggttcgcgtccttcactcctccaagaccagagccaagctggcctgggatcatcaaatccgaggagaccccatattacagccatcaccaccaccctcatccggtgatgaccagccggcagccgcatttcgtcggctcgccgtcgtcggcgacgacggcggcgttctcccccaaggaaggccggcggttcccgttcctccatgagggcgatcagataagcttcggcggcggcggtggcgcggcggcggcggcgacgctggagatctcggtgtgccagaccaccgtcgtcgcgccgccgccaccggagagcagcagcagcaacaagatgttctcctccgacgggctgacgatggcgacgacgacgacgaccaccgcccaccaccaccaccaccaccaccaagtgctcgactccgattgtgctctctctcttctgtcatccccggccaactcctccagcgtcgacgtcagccggatggtccagccgtcaacggcggcggcggcgggagccgagcaccaccaccaccaccaccaccaccaccaccaccaaatccccatggcgcagccgttggtccccaacctgcagcagcagttcggcggcagctcgccgtggttcgccagctcgcccgccgccgcggccgtcgccggcggcgggttcgcctgcccgagcatggacagcgagcagcagcagcagcagcagctgaacgccgtgctggtgccgggctccaacgagaacgagatgaactaccacggcatgtttcacgtcggcggcgagggctcctccgacggcacgtcgccgtcgctcccattctcgtggcagtag
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| Protein seq | MDWDLKMPVSWDLAELEHNAVPNMAAAASAAEPGIAAVAASRGAPGRPECSVDLKLGGLGEFGAADALKEPAAAAKAPVSSAAAAASVAKVPPSTSTLKRPRGGGGGGGGQCPSCAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRSCRKRLDGHNRRRRKPQADSMSSGSFMTSQQGTRFASFTPPRPEPSWPGIIKSEETPYYSHHHHPHPVMTSRQPHFVGSPSSATTAAFSPKEGRRFPFLHEGDQISFGGGGGAAAAATLEISVCQTTVVAPPPPESSSSNKMFSSDGLTMATTTTTTAHHHHHHHQVLDSDCALSLLSSPANSSSVDVSRMVQPSTAAAAGAEHHHHHHHHHHHQIPMAQPLVPNLQQQFGGSSPWFASSPAAAAVAGGGFACPSMDSEQQQQQQLNAVLVPGSNENEMNYHGMFHVGGEGSSDGTSPSLPFSWQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.585808 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0507100 | RBH | 0.0 | 0.0 | 1.005480 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g32944 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0507100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0015890 | RBH | 0.0 | 0.0 | 0.315226 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0015900 | RBH | 0.0 | 0.0 | 0.405231 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0016120 | RBH | 0.0 | 0.0 | 1.469044 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0015890 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0016030 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0328900 | RBH | 1.5869705 | 1.0449665 | 7.602891 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0015890 | RBH | 0.000000 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0318300 | RBH | 1.6166035 | 1.4782305 | 21.6536035 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0015870 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0015710 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0015800 | RBH | 0.0 | 4.397852 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0015660 | RBH | 0.000000 | 0.0 | 0.540321 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0015770 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G016170 | RBH | 0.0 | 0.0 | 0.557359 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0022920 | RBH | 0.0 | 0.0 | 0.921999 |
