Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0479600 | OGI:09053740 | 11/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:18402210-18404264 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GACATTTTTCAGAATATATATTGCTTAGTTATCCTCCTCTAGATCCATATGGAGGTAGTATGATCTTCAGGTTCTAGACTTCTAGTCAGGTAGCAGCTGCAAATCCAGTGAACGCTGGAACATTGTTTCTGAGAGTTCTGACAAAAGGGGACTGAGGGGAGCTGCTTCTGGTCAAGATGCCCATGGAGGAAAATTGTTCCTCATGAAGTTTACCGTGATAAATCCCAATTGACATTATAGTTACCTTCCCAGTGAAATAATGTAGAGAAGTTGCCACTTGCCAGTATTTTGTTGTGGCACCAGAAACAAAAGATGGTGACCAAGTACCTTGCCAAAAGCTCCATTCGCAAAGAAACCGGAGGGAATGTACACTATCGATTCACAATCTCCAATTCAGTGAGCCAAAGATGAACACCGTTTCAGTAACGGGAGTAGATTCTGAAGTTTTTGTCACAGTGAACCAACCAGGATCCTCTGCAAACTGGGTTAGATGAAAACCCAACCTGACCCTCCTAACATGCGCCATTGTGGGTTGGTGCTGGATTCTCCAGGCAGGTTAGCAGGTTCCGCAGACACCCCTGCATTTTATGTAGAACATGTGCATGAAACATTTTTCGAACAAAGGCATTTTATGTAAAAAAGGAGTTATAAATAGAGATGCACATAATCTCGAATGCGAAGTGGCCTATGGTGAAGTATTTTGATCCTTTCTTATATACAGAAAATTGCGCAAAAACTGTGTCAGAAAGTAGATTGATGGTTGCACTCAATCCATTTGCAGGTACGTAAATTTCACTTGTACAAAGGTGATTGACAACATTGCAGGAAAAAAAAGTAAAGTGTGACCATAATCTATTGACTGACAGGTGATTGAAACTTGCCTTGTGTTGACCAGTAGACCTTCGGGATATGATTTACCTTTCCTGTTCGAAGGTTCCTTACGAAATCAGAATGCATCATAGTAAAATATGCCTCTTTGACTGATCTTAGAAATTCAATGCCGGTGGGCACATCCCGAAGTTCCATGAGGCTATCAATGTGGAGATACTGCAGGCTGGACAAAGCTCCCTCCTGTATATATATTTGATTGACTTGCTGCAAATCCCACAGGAGTGCTTTCTTCAAATTTGGGAAGCAATTTGCATGAAAGCTTAGCTGTTGTCCAGTGTACACCCTTGTAAGACGTAACTCTGTTAAATTTGACAACTTAGAGAGCCATGCTACAAGATTCACTGTAAGCTGACACCTCGATAGTTCCAATTGCAGAAGTTCATTTCCATGAGTAGTGAAAAAAGGAGATTCTAAAGTTCCTTTTGACAATTGTCCTAGCAAATCGAGCTTCTCAAGAGGGTTCGGCAACATCAAATCATCCAGCAGGAGCACTTCATCTTCATTCATTGCTCTTATATGTAATCTTGTGAGATGTTGCATCTTTGATAAAGAGTTGCACAGTTGTGCACAGTGGCTACTCCTTACATAAGTAATGCAAAGGCTCCTCAGCTGGGATAGATTTCCTAATTTGGAAACAAAGTCTCTAGTTGCACGAACTTCACATAAAGATTGCAATTCCTTCAAGTTCCACAAGCCCTCAAATGGCTCCAAAGATTCCCAATTATTCAGACTTTTGTATGTAGCATCAACTAATTTCCAAACAAGTAAATGACGCAATTTTTTCAGATTTGAAAACCCTCTCGGAAAATTCAGCAATTGTGTACGTTCAAGACTCAATGTTTGTAAATTGAGAAGCTTTGTAATAGATTTTGGGAATTCTTTCACATTGGTATCATTGAGGCATAAATACCGAAGGTTAAATAGCTCCCCAACTGAATATGGAATGGTCTCGATAGGCAAGCCGGATAATTCTAACACAGCAAGGTACTTGGATTCTGAGAAAATGAAATAAGAAGCTGAAGATAATGCCATGCTAGTGTCAAATGCTAGGAAGGTACGTAGCCTGGATGGATCTACAGTTGATCGAATTTCACTGTTGCATTGGAGCACAGAGACGCGGCGAGAGTCTGATCCCACTTGTACCACCCCATGAGTGTCATCATA
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| CDS seq | TATGATGACACTCATGGGGTGGTACAAGTGGGATCAGACTCTCGCCGCGTCTCTGTGCTCCAATGCAACAGTGAAATTCGATCAACTGTAGATCCATCCAGGCTACGTACCTTCCTAGCATTTGACACTAGCATGGCATTATCTTCAGCTTCTTATTTCATTTTCTCAGAATCCAAGTACCTTGCTGTGTTAGAATTATCCGGCTTGCCTATCGAGACCATTCCATATTCAGTTGGGGAGCTATTTAACCTTCGGTATTTATGCCTCAATGATACCAATGTGAAAGAATTCCCAAAATCTATTACAAAGCTTCTCAATTTACAAACATTGAGTCTTGAACGTACACAATTGCTGAATTTTCCGAGAGGGTTTTCAAATCTGAAAAAATTGCGTCATTTACTTGTTTGGAAATTAGTTGATGCTACATACAAAAGTCTGAATAATTGGGAATCTTTGGAGCCATTTGAGGGCTTGTGGAACTTGAAGGAATTGCAATCTTTATGTGAAGTTCGTGCAACTAGAGACTTTGTTTCCAAATTAGGAAATCTATCCCAGCTGAGGAGCCTTTGCATTACTTATGTAAGGAGTAGCCACTGTGCACAACTGTGCAACTCTTTATCAAAGATGCAACATCTCACAAGATTACATATAAGAGCAATGAATGAAGATGAAGTGCTCCTGCTGGATGATTTGATGTTGCCGAACCCTCTTGAGAAGCTCGATTTGCTAGGACAATTGTCAAAAGGAACTTTAGAATCTCCTTTTTTCACTACTCATGGAAATGAACTTCTGCAATTGGAACTATCGAGGTGTCAGCTTACAGTGAATCTTGTAGCATGGCTCTCTAAGTTGTCAAATTTAACAGAGTTACGTCTTACAAGGGTGTACACTGGACAACAGCTAAGCTTTCATGCAAATTGCTTCCCAAATTTGAAGAAAGCACTCCTGTGGGATTTGCAGCAAGTCAATCAAATATATATACAGGAGGGAGCTTTGTCCAGCCTGCAGTATCTCCACATTGATAGCCTCATGGAACTTCGGGATGTGCCCACCGGCATTGAATTTCTAAGATCAGTCAAAGAGGCATATTTTACTATGATGCATTCTGATTTCGTAAGGAACCTTCGAACAGGAAAGGTAAATCATATCCCGAAGGTCTACTGGTCAACACAAGGGGTGTCTGCGGAACCTGCTAACCTGCCTGGAGAATCCAGCACCAACCCACAATGGCGCATGTTAGGAGGGTCAGGTTGGGTTTTCATCTAA
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| Protein seq | YDDTHGVVQVGSDSRRVSVLQCNSEIRSTVDPSRLRTFLAFDTSMALSSASYFIFSESKYLAVLELSGLPIETIPYSVGELFNLRYLCLNDTNVKEFPKSITKLLNLQTLSLERTQLLNFPRGFSNLKKLRHLLVWKLVDATYKSLNNWESLEPFEGLWNLKELQSLCEVRATRDFVSKLGNLSQLRSLCITYVRSSHCAQLCNSLSKMQHLTRLHIRAMNEDEVLLLDDLMLPNPLEKLDLLGQLSKGTLESPFFTTHGNELLQLELSRCQLTVNLVAWLSKLSNLTELRLTRVYTGQQLSFHANCFPNLKKALLWDLQQVNQIYIQEGALSSLQYLHIDSLMELRDVPTGIEFLRSVKEAYFTMMHSDFVRNLRTGKVNHIPKVYWSTQGVSAEPANLPGESSTNPQWRMLGGSGWVFI |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0479600 | OsNip_09t0479600-01 | Chr09 | 18402210 | 18404264 | - | RAP2018-11-26 | ||
| CDS seq | TATGATGACACTCATGGGGTGGTACAAGTGGGATCAGACTCTCGCCGCGTCTCTGTGCTCCAATGCAACAGTGAAATTCGATCAACTGTAGATCCATCCAGGCTACGTACCTTCCTAGCATTTGACACTAGCATGGCATTATCTTCAGCTTCTTATTTCATTTTCTCAGAATCCAAGTACCTTGCTGTGTTAGAATTATCCGGCTTGCCTATCGAGACCATTCCATATTCAGTTGGGGAGCTATTTAACCTTCGGTATTTATGCCTCAATGATACCAATGTGAAAGAATTCCCAAAATCTATTACAAAGCTTCTCAATTTACAAACATTGAGTCTTGAACGTACACAATTGCTGAATTTTCCGAGAGGGTTTTCAAATCTGAAAAAATTGCGTCATTTACTTGTTTGGAAATTAGTTGATGCTACATACAAAAGTCTGAATAATTGGGAATCTTTGGAGCCATTTGAGGGCTTGTGGAACTTGAAGGAATTGCAATCTTTATGTGAAGTTCGTGCAACTAGAGACTTTGTTTCCAAATTAGGAAATCTATCCCAGCTGAGGAGCCTTTGCATTACTTATGTAAGGAGTAGCCACTGTGCACAACTGTGCAACTCTTTATCAAAGATGCAACATCTCACAAGATTACATATAAGAGCAATGAATGAAGATGAAGTGCTCCTGCTGGATGATTTGATGTTGCCGAACCCTCTTGAGAAGCTCGATTTGCTAGGACAATTGTCAAAAGGAACTTTAGAATCTCCTTTTTTCACTACTCATGGAAATGAACTTCTGCAATTGGAACTATCGAGGTGTCAGCTTACAGTGAATCTTGTAGCATGGCTCTCTAAGTTGTCAAATTTAACAGAGTTACGTCTTACAAGGGTGTACACTGGACAACAGCTAAGCTTTCATGCAAATTGCTTCCCAAATTTGAAGAAAGCACTCCTGTGGGATTTGCAGCAAGTCAATCAAATATATATACAGGAGGGAGCTTTGTCCAGCCTGCAGTATCTCCACATTGATAGCCTCATGGAACTTCGGGATGTGCCCACCGGCATTGAATTTCTAAGATCAGTCAAAGAGGCATATTTTACTATGATGCATTCTGATTTCGTAAGGAACCTTCGAACAGGAAAGGTAAATCATATCCCGAAGGTCTACTGGTCAACACAAGGGGTGTCTGCGGAACCTGCTAACCTGCCTGGAGAATCCAGCACCAACCCACAATGGCGCATGTTAGGAGGGTCAGGTTGGGTTTTCATCTAA
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| Protein seq | YDDTHGVVQVGSDSRRVSVLQCNSEIRSTVDPSRLRTFLAFDTSMALSSASYFIFSESKYLAVLELSGLPIETIPYSVGELFNLRYLCLNDTNVKEFPKSITKLLNLQTLSLERTQLLNFPRGFSNLKKLRHLLVWKLVDATYKSLNNWESLEPFEGLWNLKELQSLCEVRATRDFVSKLGNLSQLRSLCITYVRSSHCAQLCNSLSKMQHLTRLHIRAMNEDEVLLLDDLMLPNPLEKLDLLGQLSKGTLESPFFTTHGNELLQLELSRCQLTVNLVAWLSKLSNLTELRLTRVYTGQQLSFHANCFPNLKKALLWDLQQVNQIYIQEGALSSLQYLHIDSLMELRDVPTGIEFLRSVKEAYFTMMHSDFVRNLRTGKVNHIPKVYWSTQGVSAEPANLPGESSTNPQWRMLGGSGWVFI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.138649 | 0.681184 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0479500 | RBH | 0.000000 | 0.060565 | 0.975006 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g30230 | RBH | 0.0 | 0.093147 | 0.175150 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0479600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0014180 | RBH | 0.000000 | 1.826449 | 0.439964 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0014130 | RBH | 0.0 | 0.0 | 0.258095 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0014380 | RBH | 0.0 | 2.291975 | 1.419287 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0014210 | RBH | 0.025478 | 0.073760 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0014300 | RBH | 0.158131 | 2.597712 | 0.170243 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0307500 | RBH | 0.5540585 | 1.370784 | 1.330408 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0014190 | RBH | 0.000000 | 0.000000 | 0.109314 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0297500 | SBH | 0.519293 | 1.190614 | 3.538157 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0014170 | SBH | 0.0 | 0.038216 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0014020 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0014060 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0013960 | SBH | 0.057877 | 0.0 | 0.087831 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0014020 | SBH | 0.018382 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G014510 | RBH | 0.0 | 0.956962 | 0.116765 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0014270 | RBH | 0.071551 | 4.118673 | 0.730405 |
