Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0349700 | OGI:09033140 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:11038006-11039946 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTGCGTTGTTTAGCTAAATTAATAAAATCAGAAAACAGCTTCAAGTGATATATTGGTTCACGTATAACTGGCTAGCTGAGCTGCAAGATGTACAAGATCCAAGGAAATTCAGAACATATATACCTTACTAATTTGTCATCATCAGGGCTCGATCCCACGTTGCTCCGAACATAGAGGGAGAGTGACACATTGCCCATGACAGCCGGGTAGGGCAAGATACCGAGAGGCCTCAACTCCACCATGGACATGAACGGCGTGCCTTGGCCGATGTTGATGAGGCAAACCGGCGCCCAGCTCGCCCATGCCACGAACACCGCTTCGTGAACATTATAACCATCATTTCCGTCGGTGGTGTCTATACTCACGGTGTCCCAGTGTTTGACACCAAGGGTAAGGTTGAATTTTAGCGACGAGCTGTCCAAGCCGTCGTAGTTGCCATACAAGAACTTCAGCCTGACCAAGTACTTGGACCGGACGTCGTTGGGTAGCGAGTAGCAGTTGCGCTGACCCTCGGCAGATGGGAAGCTCCTGACCGTGTAGAGAGTACGGTCAGGGCCCCACCAAGCATTGCGGTATACGGTGGTCACCTTGTGATTCTCGCCGGCGTCGGTGTAATGGCCATCTGGGACGTAAGTGATGCCGGTGAGATCGTCTGGGTAGCTGTCATCTGCCTCCAGGCCGCAGTCGATACTTAGGAAACCTATTGTGTGCACCAAAGAGAAATGGCATAGAAAAGTTTTAATCTCCACCTGTTAGTATAGAACCTAATGGGCCATTGGGGTAACTTCTTTGTTTAAGTTCTTTTGTTCAATTTATTAAGGCAGCCTCTGTACAAAATGTTACAAATATAGGTCTAATACTCTTCTAATTCTACATTCTCCAGATGTTAGGTCTCAACTCAATGGTACTGATTTCTCCCACCTCATCAACGCCGCTATACTTCATTTTTCTACTAACACGTCCTCACTAAAGTGTAAAAACCGCCTTCCTAGCCAACACTAATGTATCATTGCCGTTTCATAACAATAAACAGCAATGATACTTCAACTATCACTGTCGGTTCTCGATATGAACTAACAATGATATGATTTGAAAATACCAACCAATTAACAGTGGTATGAATTGAAAATATCACTGCTGATTCATAATAGAATCTGACACTATGCTTAATGGACCACATATATAGTTCGGCCCACCATTAACTGAGCATCGAAGTGAAATTATTAAGAAATTAATAATATTTTTATATGAAGTCGATGAATATAAACTTTATGCCAAAGTTATATTTCTTGACAAGATCTACAACATGGTTGCTGAACAATTTATTATTTGACATAGTTTATATGGTCATATATGTGTTAGAAATTATCTGATCTAATTGATAAATGCTTTAAAATTTTCAAATGAATTGAAGTAGACACAAACACTATATCAAAATTGTACATCTAAGATCTATAGTTTTGTAATTTTATAGTTGATGACCTTAACGTTTACATTTGAAGTCATCACGTTAACAGCACAGCCAGGAAGCTGCAGTTTTGTGTTCAAATTAACGCTCGACCTATAGTTTTACCATATATACAGTGACTTTTCACAATGAACTCAATGTTAAATATGTATGTACGTCGTGATACATCACCACCTTAAATCTGTGTTTTATATTTTTTTCAAAAAGAAATATCTATAAAATAATATCTATACTTTTATGAAATTTACTCATTTATGTGTATAAGCATAGAACACTTTTTTAAGATCATGCTTGATAAAACCAGGCCTTGCAAAATTAGATAGTAAGAGTATTTTGTAGTGGAAGGGACAACAGAATAGAAAAAATAAGCTGACCTGTCTGGCCGTCGGCTCGAACCGCTGCTTCAAACACCAGTACAGCGACCAAAACCAGGAGAGCCATGGAGACCTGATGAGTGATAACCTGGGACGATG
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| CDS seq | ATGGCTCTCCTGGTTTTGGTCGCTGTACTGGTGTTTGAAGCAGCGGTTCGAGCCGACGGCCAGACAGGTTTCCTAAGTATCGACTGCGGCCTGGAGGCAGATGACAGCTACCCAGACGATCTCACCGGCATCACTTACGTCCCAGATGGCCATTACACCGACGCCGGCGAGAATCACAAGGTGACCACCGTATACCGCAATGCTTGGTGGGGCCCTGACCGTACTCTCTACACGGTCAGGAGCTTCCCATCTGCCGAGGGTCAGCGCAACTGCTACTCGCTACCCAACGACGTCCGGTCCAAGTACTTGGTCAGGCTGAAGTTCTTGTATGGCAACTACGACGGCTTGGACAGCTCGTCGCTAAAATTCAACCTTACCCTTGGTGTCAAACACTGGGACACCGTGAGTATAGACACCACCGACGGAAATGATGGTTATAATGTTCACGAAGCGGTGTTCGTGGCATGGGCGAGCTGGGCGCCGGTTTGCCTCATCAACATCGGCCAAGGCACGCCGTTCATGTCCATGGTGGAGTTGAGGCCTCTCGGTATCTTGCCCTACCCGGCTGTCATGGGCAATGTGTCACTCTCCCTCTATGTTCGGAGCAACGTGGGATCGAGCCCTGATGATGACAAATTAGTAAGGTATATATGTTCTGAATTTCCTTGGATCTTGTACATCTTGCAGCTCAGCTAG
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| Protein seq | MALLVLVAVLVFEAAVRADGQTGFLSIDCGLEADDSYPDDLTGITYVPDGHYTDAGENHKVTTVYRNAWWGPDRTLYTVRSFPSAEGQRNCYSLPNDVRSKYLVRLKFLYGNYDGLDSSSLKFNLTLGVKHWDTVSIDTTDGNDGYNVHEAVFVAWASWAPVCLINIGQGTPFMSMVELRPLGILPYPAVMGNVSLSLYVRSNVGSSPDDDKLVRYICSEFPWILYILQLS |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g51880 [UniProtKB/Swiss-Prot:Q9FZB1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0349700 | OsNip_09t0349700-01 | Chr09 | 11038006 | 11039946 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCTCTCCTGGTTTTGGTCGCTGTACTGGTGTTTGAAGCAGCGGTTCGAGCCGACGGCCAGACAGGTTTCCTAAGTATCGACTGCGGCCTGGAGGCAGATGACAGCTACCCAGACGATCTCACCGGCATCACTTACGTCCCAGATGGCCATTACACCGACGCCGGCGAGAATCACAAGGTGACCACCGTATACCGCAATGCTTGGTGGGGCCCTGACCGTACTCTCTACACGGTCAGGAGCTTCCCATCTGCCGAGGGTCAGCGCAACTGCTACTCGCTACCCAACGACGTCCGGTCCAAGTACTTGGTCAGGCTGAAGTTCTTGTATGGCAACTACGACGGCTTGGACAGCTCGTCGCTAAAATTCAACCTTACCCTTGGTGTCAAACACTGGGACACCGTGAGTATAGACACCACCGACGGAAATGATGGTTATAATGTTCACGAAGCGGTGTTCGTGGCATGGGCGAGCTGGGCGCCGGTTTGCCTCATCAACATCGGCCAAGGCACGCCGTTCATGTCCATGGTGGAGTTGAGGCCTCTCGGTATCTTGCCCTACCCGGCTGTCATGGGCAATGTGTCACTCTCCCTCTATGTTCGGAGCAACGTGGGATCGAGCCCTGATGATGACAAATTAGTAAGGTATATATGTTCTGAATTTCCTTGGATCTTGTACATCTTGCAGCTCAGCTAG
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| Protein seq | MALLVLVAVLVFEAAVRADGQTGFLSIDCGLEADDSYPDDLTGITYVPDGHYTDAGENHKVTTVYRNAWWGPDRTLYTVRSFPSAEGQRNCYSLPNDVRSKYLVRLKFLYGNYDGLDSSSLKFNLTLGVKHWDTVSIDTTDGNDGYNVHEAVFVAWASWAPVCLINIGQGTPFMSMVELRPLGILPYPAVMGNVSLSLYVRSNVGSSPDDDKLVRYICSEFPWILYILQLS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0351800 | RBH | 0.194692 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g18020 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0349700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0006880 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0006880 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0007030 | RBH | 0.114287 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0006900 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0007000 | RBH | 2.922249 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0192500 | RBH | 0.7153825 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0007060 | RBH | 0.486405 | 0.0 | 0.034045 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0173400 | SBH | 0.01507 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0006900 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0006770 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0006750 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0006660 | RBH | 0.062537 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0006730 | RBH | 0.054246 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G007240 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0007070 | RBH | 0.179610 | 0.0 | 0.296643 |
