Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0340400 | OGI:10045440 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:10448414-10452767 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATCTTCCTATCCTTTGCATAGCGTCGTACTCTCCCCCTGCGAAGAAAGAAAAAGCTTTTTCTTTTTCCTCCCGGCAAACCCTAGATCGGCGCCGCCGCCGCCGCCACCGGGGTACTCTCCCCGGCCGGCCAGCCCCCGTCGATTCGGCTCTCTGGAAGGCTGGCACACCGGATCCGCGACGTCGGGGGATGGTGTTCTGCTCTCGCCGTGGGGGAGAGTGTCCGGCGCCGGCCGGTGCGCTGGAGAAGTGGAAATCGATCTCCTCGCCGGCCGGCGGCGGCGGCGGCTTTTCTTCGCCGGATGTATCCGGTGACGGTTATTTGATTCTTGTCTCTGTTTTCTCTTTTTTTTCCTTGTATGTATAAACGATTTATTTTCTCAAGATAGAGAGGAAAAGCTCTGTATGCTGTTCTTCCGATGGATAGCGACCGTGCGCTTGTTGGAGCGGCCAAAGGCGCCGGCTTTTCCGCCGGTATGGTCTTGTCGCATATGACATCCGCCTGCGATTGGTGATGGTAAGATCTTTAATTTGATTCCGGGCAACTCTGTTCGTCAAGATTTATTTTCTTTTAGTCTAATCATCACTCTGCAAATGTTCTCTGCAGCCTCATGAGGTCAACTCTTTTTTTTTTGTCGAGAGTATTTGATTTGAAGGGGACTATTTTTTCGAGAGGATTTGGACTTGAAGAGAATGAGGACGTGCGATGATTGAAGTTTCGGGACCTGAATCTCAGTCGGGATGGTCATTAGGCGAGAGAATTACAAAGTGATTATAATCATTATATGGCGTGATTTGTAGGTCCAGAGATCCGTATTTCTGTGGCTTGAGAAGCATCATGCTGTTCGGACTTTATTGGAAGTTGTCATTATATTTTGTTGGCATATCACTGGCAATATACAAGTGTTATTACAGAGTGAACTAAAATGGAGATGGTCATTCTATTGTTCTGTATTTATCATGCGGATTTTGCTCGCGCACAAGGATTTTGAAAGCATGTTCATCTTACAAGTTGGAGAATATTTTCCTTTCATGTCCATATTATTTGCCAGCACCGTGCACAGACAAGTCGTTGTTAACAATGGAGGTGAGTTCTAATAAGTGATCGGATCTCTATGCTGCCTCATTTTGTAAGATAAACACAACTCAAATAGATAGATCAAAGAGTTTTCGTAATTATAATGTACTCTTTTTGTTTCATATTATAAGTGGTGACTTTTTTCTTTAATATAGTACTATTTTAAAGACAAAACAAATATATTCAATGTGTGATATTTAATAAAACTAATTTGATATTTTAGATGTTGTTAAATATTATAAGTTGTGACTTTTTTCTTAAATATAGTACTATTTCAAAGACAAAACAAATATATTACTAAAATATATTCAATGTGAGAACTAATAAAACTAATTTGATATTTTAGGTGTTGTTAAATTTTCATATAAGCTAGTTTGATTAGAGAAAAAGTCAAATGACTTATAATATAAAACAAAGTAGTACATGTTTTTTTTCATGAAATATTGTCGAATGGGTTCAATAAAATTTTACTGTCTGCGTGTGTAGTTTTCCATATTAGAACTGTCTACTCCTATCAACAAGATTTAAATCCTAGGATTTGAATCTTTTTGGAGTAAGTACATAGCTTAAATTTAGGACGAATTAGTCACCACTGAACCACACAGATCACGGTAGTAATGATTGCATACGGTCAAATTATATTGACCTTGATTAAGTTGCGAGACACCAACCTGCAAGTGTAGGAAGGGTAAATATGCGTTGGAAATCGAACTTAAATGAAAACTCATATAAACCCCGACCAACAAGTCGTCTAAATTTATATTAAAAAATTACACATGCAAATGAGATGAGGTTATATAACCATGTATAAAGATCTTGTCTAAACTCAACTTTTATGAGTTACAAAAATAACAAATTTCAAACTTTTGTTATGTTTGAAATTTAGTACAGTTTTTAAAAGAATTTTTACAAGATTATGTAAAACTTTTGTTATGTTTGAAATTTAGTATAGTTTTTAGGAGAATTTTTACAAGATTATGTAAAATCGTCTCATCTACATGTGTGATTTTTATGGTGAAATTAAACAACTTTTTGATCGGGGTTTACATGAGTTTTTTTTTTGCCTAAGTTGGGTTTACTAATTTATACAAGTGTGAGAAAATGGATGTCGAACAAACTTGACCAATCCGTATGAAATATCTATAGAATTCTTTTGCCCAAAACACCCTTAGCACTGATGATTTCCCTTCAATAGATTACCTTGAAGGTCGTTTAAATCTGGTCTCCGAACTGTCAAACTCCTAATATGTTTTTACTTTAACCTGCAATGTCTTTCTTATATGAATTGACATGATCTAATGACATATCTTTAATTAATTTTGCCAGGTTGTCCAATCATCACGGAACTCCTTTTCATGTGATGCTACGTGGCAAGAACACAAATAGATATGCAATGGTAAGGCTTGTTAATTCATCTGAATGTTGCTAGCATTTAATCATATAGCAAACTACACAAATAGTTCCCAAATCACACAAAGTAAGTCGTCGAATTACGCAAAGTAATGCCATGGAGTACAGAAACATTGATTATAGGTAACATGGTGAGAGTTCAAATAATTCCTAAATTGCATTATGAGATTATAAGAAAGTAATCAACTGCAGTATGTAGTTTATCATTTATTCCATCATTTCTCATCTGTCTGATGGTCTCCCTCTGATCATCTTAGCAATTACCTGCAAGCAAATAACATATAAAATCATATACAGTTGGGTAACATAACAAAGAACATTATGTGAGAAGATTTCTCTATGGTTCCTAGTTGGATGAGCTGGAATTATGTGAGAAGAATATTGTGGTCTTCGGGCTGTTCGCTGCTTTCTGCTAGAGAAGTTTGGAAGTATCTACAGTTATTTTGTGGTAAAGGAGAATTGTTGGGTGGTGAGTTTTATGCAGCGAAGGAGATCGAACATGACATCCTATGAGGTTTGCTGGGAAAGGAAATTTAAATAAAAAACATATAGTGATTCTTCTCAGAATTGGTTCGAGTTGTATACTTTGCTCTCAATGGAATTATGGCAGAAGCCCACTGGCTATAAATTGATGCAATCAGAAGCTACTTCTAGTGCTACCTATTTAATTAGTGCGGATTGGACTATAACAGAGAGCTGCAAATTATCATACAAAATAACACTTGAAGATGGTGAAGTAGATGTGTACTGGTTGAATACTATGGGCCAAGAATTCTTGTATGAACAATTGATATTCCACAAAGAGGAGTTCGCTACAGTTTGGGTTTATCAAAGTACTAGTTTTATCAAAAGTAAGGGCAGTGGCAGGGTTGTCACCATTGCAGCAAGTACCTCATTTACCAACTCTATACCATTGCCACTACAGTATTGGAATTATGGGTCTGTGTGGAAATTACAGTTCTGTTGTATGGTCTTTCTGATCAGTGTCAAACAAGCTTGCGGCGCCTATGGATATCTTGGATGAAAACTTGGAAGAATCTGATCCAGCAAGATGAAAGATGTGGCCTGTTCATTCAAAATATGTTCAGAGGCTGTGTAAATCAAATGGATGAATTGTGTCTTAGTGCACCTGATCTACAAATGCCATGGGATCCTGGTGGTTTATGTTTACTCAAGTTTCTAGCTATCTCTTCTCTTGGACAAATCACATTTCAGGCAGTCAAATTCTCATTGCAAGACAGTTCTCTCTTTCACATGCGAAGTGCCAGGATTTGCTTGAGCTGTTCTTTTGAGATGCAAGTTTTCTGTTGGCACGCTGAAAACAAATTGGACATTAATGAAGCTTTTGGAACGATGCAAGAATACTAGAGAAATCAAAGTGGAGGTTTGCCATTTCTGAAGTTTACTTGTCATCAACTTATGGACAAGTCAGTTTCAAGGAGAGGAGATTGTCAGGAACCCATTGGGCTGCACATGGGCTGACTCAATTGCTAATCCATGCCAAGGGCCAAACAAACAAAGGAGAGGGATACAAAAGGCAGCAGCAGGAGAACTTCAAGCAACGAACAGATCAGGCATCAGCGGCTTCGGCCACGGCGGCGGCTTGGTTCGGTTGAACCTCGTCGATCTCTATCTCTTTCTTACTCTCTCGTGTTCCTCTTCACTGCCATTTCTAGAAGCTTCCTCTACTTCTTCTCACTCAATTTCTCTTCTATTCTCTGAGTTTGTATTGAATTCTATTGTTCTTGAGAACAATTAGTTTGGAGGAAGAGGGTTGTTAACAATGGCAGACAAAATTAAACAATTCGCACATGCTCAAGACTGAGATGCAGAAAAATATTGCTAATATCATATAATCATCTCCAGC
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| CDS seq | AAAACATATAGTGATTCTTCTCAGAATTGGTTCGAGTTGTATACTTTGCTCTCAATGGAATTATGGCAGAAGCCCACTGGCTATAAATTGATGCAATCAGAAGCTACTTCTAGTGCTACCTATTTAATTAGTGCGGATTGGACTATAACAGAGAGCTGCAAATTATCATACAAAATAACACTTGAAGATGGTGAAGTAGATGTGTACTGGTTGAATACTATGGGCCAAGAATTCTTGTATGAACAATTGATATTCCACAAAGAGGAGTTCGCTACAGTTTGGGTTTATCAAAGTACTAGTTTTATCAAAAGTAAGGGCAGTGGCAGGGTTGTCACCATTGCAGCAAGTACCTCATTTACCAACTCTATACCATTGCCACTACAGTATTGGAATTATGGGTCTGTGTGGAAATTACAGTTCTGTTGTATGGTCTTTCTGATCAGTGTCAAACAAGCTTGCGGCGCCTATGGATATCTTGGATGA
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| Protein seq | KTYSDSSQNWFELYTLLSMELWQKPTGYKLMQSEATSSATYLISADWTITESCKLSYKITLEDGEVDVYWLNTMGQEFLYEQLIFHKEEFATVWVYQSTSFIKSKGSGRVVTIAASTSFTNSIPLPLQYWNYGSVWKLQFCCMVFLISVKQACGAYGYLG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0340400 | OsNip_09t0340400-01 | Chr09 | 10448414 | 10452717 | + | RAP2018-11-26 | ||
| CDS seq | AAAACATATAGTGATTCTTCTCAGAATTGGTTCGAGTTGTATACTTTGCTCTCAATGGAATTATGGCAGAAGCCCACTGGCTATAAATTGATGCAATCAGAAGCTACTTCTAGTGCTACCTATTTAATTAGTGCGGATTGGACTATAACAGAGAGCTGCAAATTATCATACAAAATAACACTTGAAGATGGTGAAGTAGATGTGTACTGGTTGAATACTATGGGCCAAGAATTCTTGTATGAACAATTGATATTCCACAAAGAGGAGTTCGCTACAGTTTGGGTTTATCAAAGTACTAGTTTTATCAAAAGTAAGGGCAGTGGCAGGGTTGTCACCATTGCAGCAAGTACCTCATTTACCAACTCTATACCATTGCCACTACAGTATTGGAATTATGGGTCTGTGTGGAAATTACAGTTCTGTTGTATGGTCTTTCTGATCAGTGTCAAACAAGCTTGCGGCGCCTATGGATATCTTGGATGA
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| Protein seq | KTYSDSSQNWFELYTLLSMELWQKPTGYKLMQSEATSSATYLISADWTITESCKLSYKITLEDGEVDVYWLNTMGQEFLYEQLIFHKEEFATVWVYQSTSFIKSKGSGRVVTIAASTSFTNSIPLPLQYWNYGSVWKLQFCCMVFLISVKQACGAYGYLG |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0340400 | OsNip_09t0340400-02 | Chr09 | 10451570 | 10452767 | + | RAP2018-11-26 | ||
| CDS seq | AGTGCGGATTGGACTATAACAGAGAGCTGCAAATTATCATACAAAATAACACTTGAAGATGGTGAAGTAGATGTGTACTGGTTGAATACTATGGGCCAAGAATTCTTGTATGAACAATTGATATTCCACAAAGAGGAGTTCGCTACAGTTTGGGTTTATCAAAGTACTAGTTTTATCAAAAGTAAGGGCAGTGGCAGGGTTGTCACCATTGCAGCAAGTACCTCATTTACCAACTCTATACCATTGCCACTACAGTATTGGAATTATGGGTCTGTGTGGAAATTACAGTTCTGTTGTATGGTCTTTCTGATCAGTGTCAAACAAGCTTGCGGCGCCTATGGATATCTTGGATGA
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| Protein seq | SADWTITESCKLSYKITLEDGEVDVYWLNTMGQEFLYEQLIFHKEEFATVWVYQSTSFIKSKGSGRVVTIAASTSFTNSIPLPLQYWNYGSVWKLQFCCMVFLISVKQACGAYGYLG |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0340400 | OsNip_09t0340400-03 | Chr09 | 10448431 | 10452702 | + | IsoSeq | ||
| CDS seq | ATGCCAAGGGCCAAACAAACAAAGGAGAGGGATACAAAAGGCAGCAGCAGGAGAACTTCAAGCAACGAACAGATCAGGCATCAGCGGCTTCGGCCACGGCGGCGGCTTGGTTCGGTTGAACCTCGTCGATCTCTATCTCTTTCTTACTCTCTCGTGTTCCTCTTCACTGCCATTTCTAGAAGCTTCCTCTACTTCTTCTCACTCAATTTCTCTTCTATT
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| Protein seq | MPRAKQTKERDTKGSSRRTSSNEQIRHQRLRPRRRLGSVEPRRSLSLSYSLVFLFTAISRSFLYFFSLNFSSI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.254050 | 3.544786 | 6.776600 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0130701 | RBH | 0.0 | 0.0 | 0.191623 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g17049 | RBH | 4.220286 | 2.539928 | 1.985631 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0340400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001530 | SBH | 0.000000 | 0.0 | 0.339330 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0001530 | SBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0001440 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0001570 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G001520 | SBH | 0.185058 | 0.0 | 0.396917 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001390 | SBH | 0.0 | 0.0 | 1.105446 |
