Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0337500 | OGI:09030970 | 9/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:10260259-10266738 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGTGTGACAGAAGGGTTCCTCACACTAGAGGAAACTATCCTTTATTAATGAATGATAACAAAGTGCTCATACAAAGAGCATTTTAACTAAGACCATAACTAAATTGATAACTGAACACCTAAGCAACAAATGAAACTTGGGACACGGACTCTAGGATGCTCGCCTAGATGGACAGAACTTTGTAGCAACTCCACGACGCCAGTCTTTGTCAACTTGGAACTTCCTACATATAATTTAAAAATAACATTAATCGAATGACCACTAGATTGAATTAGTAATCATGTATGACGTAAGAAATCTTACTTAATTGTTTGGGACACTTGAAGATGAAGCACCACCAGTGCCACCCATGCGTGCCCACATTGCTTTCATTCTTTCCTCAAGTTTCTGGGCCAACAAACACTCCATGTGACCACTTTGTTCCTCTACGGTTCTTTTCTGAGAATTCAACTCTTCACGCTGAGACTGCAACTCGCCCTTTAATTGCAAGTTTTCTACTGTCAATTTTTGAACTTCTTCTAGCAAAGCAGCAGCTTGTTGATGTGCTTCATTGGCTTGCTGTTGTGCAGCTTCTGCTTGTGCATTAACTCTGTACCTCTCTTGAGCTCCCTCATTGATTGCACTAATACCAACTCCATGCGAGTGGTTTGGCTTTCTGCCAAGGACTAATGCAAAGTGTTCAACCATTGGGATTTGAGCAGCTGCAATCCTTTCCTGGTTTGTTTCAGCTACTGTCTGCAGATTGTTCTAAACAAATCAAAGAAAATATGTAAGTCCATATTAAAAAAACTCATGCAGTAAAATGTAGGTAACAGACATTTTTGTTTACCAGAATTTCTTCGCCATTAGGAACGGACCATGTTCCATTCTTCAAATAAGTTGCCTTCCAAACATCTATAGCACTAGGCCATTCACCTGTCACTAGGTTTCTCTGCAATTATATCACATACAAAAGAAGCCTTATAATTTATATATACAAGACATGTCAAACATATAGTTTAAAGATATAAGTGAATGACAATATTCCTTACCAGTTCATGTGCTATTTGCACTATAGACTTTGTTCCAACATGTGATTTCATCTCTTGCTTTGATCTGTTAATGGAATTATGTTTGCTCCGTTTCTAAAAAAACATAATAATCTCATAAGAATAATGAATTATGAATCATATTGTATTAATTGTAAAGAAAATTAAACAAGTACCTGGAATTGCTCATCACTCCATAAGTTATCAATCAACCACTGCCAGTCCTCTGGCGCAACATGACTAGGACACTGTTTTTGTTGTGCAATAGGTCTTGTACAGTTTGTGGCGTCTTACATTGTACTTTCGCTCAACTTGTGTCATTACACATTGGTAGTCTGCCATTGAGATCTCAGGGAATTTTGCCTACAGAATGATAGTAGATCATATGAACAAACAATGTACAAAATCATGACAGCAAAAAGAAAACAAAAATGTACAAATGAAATATGCTAATGTGTCCGAAAATTCAAGAACTCCAACCAGATGACATACCTTCAATAAATTCCAAATTGATGACATGGTTCCAGGAAAAGCTTTTTCAATGACTTTCCACTTCTTCACCTTAAGGGGGACCTCTTGTCGCACACAGACAGTGACCTCACTTTTAAAGACACTTGCGTGCCTACCATAGACTTTTCCAAACTGTGCAGCAAATTGAATGTCTAGTGGCACACCCCTTGCTCTCAGTTTTGCAAGTGTTCCATTAATGGTGAGACCCCTACCTTTCCTACGTTTGAGACCTAATTGAAGGAAGAAGTATTTTAATTTATTTGCTTGTGAAGGAATAGATTAATGAAGTGAAGGTAAATATGTTAAATACCTGTGTTTCCGGTTGGTCCCATCCGTCCCTCATTCCTAGTATTGGTTATGACTTGTCGAGCAGCATCATCCGAAGTCTCCATCTGGTTCACGGATGGACGAACTTGGGAAACCATTTTGACCTACAAAATAAGAAATGAGTACAAACAGATCTACTACAGGATTACAAACCAAATTGACTAAGATAGAAATCCCCACAAAACACCGATATACTATAAGATTGAGAACCAAATTAACTAAGAAAGAGAATCCCAATTAAAAATGGATATTAAGTTGCATCTAATTAGGAAATTAACACAAATCATAAATGCAGAAAAACAAGACGGAGAGAGTGGACGCCAGAAGGGGCAGGTCATATCCCTGCGACACCACGCTATCATCAATATGTAGATGTTGCGGCACCAGCGCCGCCAGAAGATCCATAGGACTGCAGTGATTTGGAGATGGTGGTTGTGTGATTGTGTCCCGGCAGTGGTGGGTGTAATCTCTCAAAGATGGATGTACTCTAGGGCTATGCAGTGAATAAAAAATGGGGAATGCCGAATGGATCCTATAGGATTGCGAGAATAGCAAAGAGCCATAGTAGATTTGTTTCTTTACCTTTGACTGCAAGTGTGCGCAGGGATCGAGAACTCTAGATGCGAATGGATTGTACTAGATGGGCAGCCTTATATAGTGAGGTAACTCTGTCAATTTGGCGGGAGTAAAATTTTGCTGGCAATTACTTTTGGAGGGAAAGTATGTTTTGCTGGCCGATTTATGCGTGCGTGCATAACAAATTAGTTTGTTTGTGCTGATCCAAAATATTTGTTCACCAGCATTTGTTAACAAGCTCTCGTAAACAAATATGGCAATTGTTTAATGAATCAATAACCTGTGGAGTGAAAAAAAATGATACACACATGCACATTAATTGTTGATGTGGGTTGGCACCTCCCTGCATGGAAAACTAATAAGCCAGCTCATTAACATTAACAAAGCTAATACTAAAAGCTTAGCTTGGCTCAGCTCGTGAGCTGGTTCATTAATAAGCATATGCTCATTATCTAAAAAAAATTAATAAGCATATGCTATATTAGATGCTAGACATCTAGCAAAATCATGTCTCTGCCATAGGGTATCGTGGTCTTGTGATAATAATTTGGTGTTAGATTATATAAAGATTGATACATGTTTGAATGACTGCATTCTTTTCAGAGGTGAATATGCTAAAGCTGAAACATGCCCTGTTTGTGGAATTTCAAGATGGAAAGAGGATGGAGAAAATAGTGCTCGCAAGTCAAGGAGGAGAAAAGCTAGGAAAGTTCCGCAGAAGGTTTTATGGTACTTTCCTTTGATCCCAAGATTAAAGCGTATGTACATGTGTTCAAAAATAGCTGTTCATATGCGATGGCACAAAGAGAAGCTAGTTGATGATGGATATATGAGACATCCAGTAGATTCTAATGAATGGAAGAACTTTGACAAGAATTTTGAATCATTCGCATTGGACGCACGGAATGTTAGGCTAGGCCTTGCTAGTGATGGATTCAATCCTTTTGGAAATATGAGCTCATCATATAGCATATGGCCAGTTGTTATTGCTATATATAACTTACCAACTTGGATGTGCATGAAAGATTCTTATATGATAATGTCAATGCTTATCCCTGGGCCTAAAGCACCTGGAAATGACATAGATGTATACTTGCAGCCATTGATTGATGAATTGATACAGCTATGGGAAGGCGTGCCAGCCTATGATGCTCATGCAAAGTCCTCTTTTAAGCTACGGGGAATGCTGCTTTGGACAATCAATGATTTCCCTGCATATGGTAATTTATCAGGCATGAGCACGAAAGGAAAATATGCATGTCCTTCTTGTCACATGGACACTTGGTCCCATAGGCTCGTTAATGGACACAAATACTGCTATATGGGACATCGTCGCTTCTTGCCAACAAGACATTCGTGGAGGAGCAATGCAAAATCTTTTGATGGCCAAAAGGAAAGACGTAGCGCCCCAAAAGCGTTGTCAGGAGATGACATTATGCGTCAATATCAAAATTTCAATCAGGTACTCTACTAATTATGATATATTTATGCTTGTATCCTATCTGGTCAATCTGAAAGTAAATTATTATACTATTTGCTATTCTATGCCTTATTTGGTATTACTTTGAGTATAAGAATATGAGTAGTATATTATTGTTGACATCACTTTATGCATTCAGGTGAAATTTGGGAAACATAACAATAAGAGAAAACGCTCAAGCACATTATATGGAGTTTGGAAGAAAAAAAGTATATTTTTCCAGCTGCCATATTGGTGTACGTTATCGATAAGACATAATCTAGATGTCATGCACATTGAAAAGAATGTTTGCGATAGTATTGTGGGTACCTTGTTAAATCTGGATGGGAAGAAAAAGGACAATATTAAATCCCGGTTTGATTTGGAACTCATGAAAATACGACCTGAACTTCATGCACCTCCAACTGGTGATGGGAAGATCTTATTTCGTCCTGCATGCTATACAATGACACTAGCTGAGAAGAAAGCATTTTGTGAGTTCCTTAGAGAAATAAAAGTGCCAGATGGATACTCTTCAAAAATTTCACACTATGTGGATGCAACAAAAGCTAAAATATCAGGGATGAAGTGTCATGATTGTCATGTATTTTTACACAGATACCTTCCATTTTCTATTCGTGGAGTTCTGCCTGCTGATGTTTGTGAGGCTATAATTGAGCTATGTAGCTTTTTTAGAGAAATTTGTTCCAAGAAATTAGATACTGAAATTCTCAAGAAGCTTGCATCATCAATTGCTGTTACCCTCTGTAAGTTAGAGATGATTTTCCCCCCTTCATTCTTTGATGTAATGTTGCATCTACCAATCCATTTAGCCCAGGAAGCTATTGCTGGTGGACCTGTCCAGTATCGGTGGATGTATCCCATTGAAAGGTTTTTGCGAAGGTTGAAGTCTTTTGTAAAAAACAAAGCTCGCCCTGAAGGATCAAACAAGAATCCTGCAAGGAGTTGAAACAAGAATATTTTGCAAGAATGTGTAAATTTTTGTTCTATGTACCTTCAAGGAGTTGAAACAAGAATCAATCGACCAAGTCGAATCGAGGACGTGCAGAGTGACAACAGCAGTACAAAATTTCAGATATTTGGTACTGTTGGCAGGCCACTCCTTGGTAACAAATACTGCCAGATGGATATGAATGAGTTGGAGAAAGCTCGGATATATGTTCTAAAGAATTATGAAGAAATATCAGAATACGCAAAGTAAACAACTACTACTTACTCTCATTTTCTAATATGTAAATGCTGTCAAAATTTAACGTACATGTACATGTCTTGCAGCATTTACAAAGACCAACTTAGCATCCAGAACAGTAAAGGTGTGGAAAAGCGCCATGACAAAGAATTTTTTGTATGGTTCAAGAATCATGTATGTACACGCCATAATAAAAGTATTTTTTTTACATTTTACAACTATTTGTAACCTGTATAAACATTCTTCCAGATATTTGAGAAACATTCCAAAGGATCTCCAGATATATCAGAAGAGTTGTTTGCTCTAGCAAGAGGTCCTGATGCTCGAGTAACCCATTACACAAGTTATATGATTAATGGATGGAGATTTAACACCAGGGACCGAGACAAGTTGGTTCAATCACAAAACAGTGTAGTCTTTGTTAAAGGTGATGAAGCCAGTGGAAGCAAAGACTATTTTGGTGTCTTGACAGATATTATCAAGCTAACATATGGTACTTTTAGTGTCATATTGTTTAAATGTGAATGGTGGGATGTACACACTAAAAGGGGAGTAAAAGAGGACAAGCATAGATTTACCTTAATTAATACTTCCCGTACAGTGCCAATTGATGAGCCATATATTTTGGCAACACAAGCTGAGCAAGTATATTATGTCAAAGATACTAGAGACCCTAAATGGTTTGTTGTAGTCAAGACGAAGCCACGTGATTTGTATGACTTTCCTCCTACAGAAGAAGAAGAAGAAAATGATCCAACTTTATCAAATAAGTCTAGTTCTGAAGCATGCCAAGAGAATGAGCATATCACGGCTGCATTGAATTACACTACAATTGATGATGGTGACTTCCCTACGGTTCTCAGTAAAGATGGAGTCGAATGTGAACCCATTGAAGCAGAACCAGTAACACATTCTGAAGATGATCTGTTTGAAGAGGAAGAAGAAGAAGAGGAAGATTCTGAAAGTGATGGCGCTGAGTATACAGATACAGATGATGAAAGTGACATCCAAACTGAAGAAGATGTAGATGACAGTTAATTTATAAACTATATTCATGTTACTGCAAATTTACACAAACACAGCAAAAATATGTTGGCCTGAAATACAATTCTTTGATATTGAGGACATTAATTGCCTATGTTTAATACAATATACTAAGTAAATTAATTTCTTGCAGATTATGAAATGTAACTAATCCATATTGAGGCCTATTTGACTGATTAGTAGAAACTAGCATGTACTACTAAGTATTGGGCCCTGTTGCAACTCTGTAAGTCACGGTCAGATATATAATCCATACTCCTTGAACAGCTGACCATGTTGGATAATAGCTTTTTTCAGATAAAGAGGATAGGGATCTGGACACATCT
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| CDS seq | ATGAGTTCCAAATCAAACCGGGATTTAATATTGTCCTTTTTCTTCCCATCCAGATTTAACAAGGTCAAAATGGTTTCCCAAGTTCGTCCATCCGTGAACCAGATGGAGACTTCGGATGATGCTGCTCGACAAGTCATAACCAATACTAGGAATGAGGGACGGATGGGACCAACCGGAAACACAGGTCTCAAACGTAGGAAAGGTAGGGGTCTCACCATTAATGGAACACTTGCAAAACTGAGAGCAAGGGGTGTGCCACTAGACATTCAATTTGCTGCACAGTTTGGAAAAGTCTATGGTAGGCACGCAAGTGTCTTTAAAAGTGAGGTCACTGTCTGTGTGCGACAAGAGGTCCCCCTTAAGGTGAAGAAGTGGAAAGTCATTGAAAAAGCTTTTCCTGGAACCATGTCATCAATTTGGAATTTATTGAAGGCAAAATTCCCTGAGATCTCAATGGCAGACTACCAATGTGTAATGACACAAGTTGAGCGAAAGTACAATGTAAGACGCCACAAACTGTACAAGACCTATTGCACAACAAAAACAGTGTCCTAG
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| Protein seq | MSSKSNRDLILSFFFPSRFNKVKMVSQVRPSVNQMETSDDAARQVITNTRNEGRMGPTGNTGLKRRKGRGLTINGTLAKLRARGVPLDIQFAAQFGKVYGRHASVFKSEVTVCVRQEVPLKVKKWKVIEKAFPGTMSSIWNLLKAKFPEISMADYQCVMTQVERKYNVRRHKLYKTYCTTKTVS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0337500 | OsNip_09t0337500-01 | Chr09 | 10260259 | 10266738 | - | RAP2018-11-26 | ||
| CDS seq | ATGAGTTCCAAATCAAACCGGGATTTAATATTGTCCTTTTTCTTCCCATCCAGATTTAACAAGGTCAAAATGGTTTCCCAAGTTCGTCCATCCGTGAACCAGATGGAGACTTCGGATGATGCTGCTCGACAAGTCATAACCAATACTAGGAATGAGGGACGGATGGGACCAACCGGAAACACAGGTCTCAAACGTAGGAAAGGTAGGGGTCTCACCATTAATGGAACACTTGCAAAACTGAGAGCAAGGGGTGTGCCACTAGACATTCAATTTGCTGCACAGTTTGGAAAAGTCTATGGTAGGCACGCAAGTGTCTTTAAAAGTGAGGTCACTGTCTGTGTGCGACAAGAGGTCCCCCTTAAGGTGAAGAAGTGGAAAGTCATTGAAAAAGCTTTTCCTGGAACCATGTCATCAATTTGGAATTTATTGAAGGCAAAATTCCCTGAGATCTCAATGGCAGACTACCAATGTGTAATGACACAAGTTGAGCGAAAGTACAATGTAAGACGCCACAAACTGTACAAGACCTATTGCACAACAAAAACAGTGTCCTAG
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| Protein seq | MSSKSNRDLILSFFFPSRFNKVKMVSQVRPSVNQMETSDDAARQVITNTRNEGRMGPTGNTGLKRRKGRGLTINGTLAKLRARGVPLDIQFAAQFGKVYGRHASVFKSEVTVCVRQEVPLKVKKWKVIEKAFPGTMSSIWNLLKAKFPEISMADYQCVMTQVERKYNVRRHKLYKTYCTTKTVS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g16780 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0337500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0006250 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0006270 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0006480 | RBH | 0.000000 | 0.0 | 1.898370 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0006320 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0006380 | RBH | 0.0 | 11.491355 | 7.063091 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0336300 | RBH | 0 | 0.1365145 | 0.551937 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0006510 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0358600 | RBH | 1.5581775 | 12.247143 | 7.8422565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0020530 | RBH | 0.0 | 0.056997 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0006190 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0020680 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0020190 | RBH | 0.0 | 1.003062 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G006580 | RBH | 0.0 | 0.0 | 0.278309 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0020380 | RBH | 0.000000 | 4.312307 | 1.639583 |
