Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsAzu_09g0006250 | OGI:09030970 | 9/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr09:10574540-10581629 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | GACAGAAGGGTTCCTCACACTAGAGGAAACTATCCTTTATTAATGAATGATAACAAAGTGCTCATACAAAGAGCATTTTAACTAAGACCATAACTAAATTGATAACTGAACACCTAAGCAACAAATGAAACTTGGGACACGGACTCTAGGATGCTCGCCTAGATGGACAGAACTTTGTAGCAACTCCACGACGCCAGTCTTTGTCAACTTGGAACTTCCTACATATAATTTAAAAATAACATTAATCGAATGACCACTAGATTGAATTAGTAATCATGTATGACGTAAGAAATCTTACTTAATTGTTTGGGACACTTGAAGATGAAGCACCACCAGTGCCACCCATGCGTGCCCACATTGCTTTCATTCTTTCCTCAAGTTTCTGGTCCAACAAACACTCCATGTGACCACTTTGTTCCTCTACGGTTCTTTTCTGAGAATTCAACTCTTCACGCTGAGACTGCAACTCGCCCTTTAATTGCAAGTTTTCTACTGTCAATTTTTGAACTTCTTCTAGCAAAGCAGCAGCTTGTTGATGTGCTTCATTGGCTTGCTGTTGTGCAGCTTCTGCTTGTGCATTAACTCTGTACCTCTCTTGAGCTCCCTCATTGATTGCACTAATACCAACTCCATGCGAGTGGTTTGGCTTTCTGCCAAGGACTAATGCAAAGTGTTCAACCATTGGGATTTGAGCAGCTGCAATCCTTTCCTGGTTTGTTTCAGCTACTGTCTGCAGATTGTTCTAAACAAATCAAAGAAAATATGTAAGTCCATATTAAAAAAACTCATGCAGTAAAATGTAGGTAACAGACATTTTTGTTTACCAGAATTTCTTCGCCATTAGGAACGGACCATGTTCCATTCTTCAAATAAGTTGCCTTCCAAACATCTATAGCACTAGGCCATTCACCTGTCACTAGGTTTCTCTGCAATTATATCACATACAAAAGAAGCCTTATAATTTATATATACAAGACATGTCAAACATATAGTTTAAAGATATAAGTGAATGACAATATTCCTTACCAGTTCATGTGCTATTTGCACTATAGACTTTGTTCCAACATGTGATTTCATCTCTTGCTTTGATCTGTTAATGGAATTATGTTTGCTCCGTTTCTAAAAAAACATAATAATCTCATAAGAATAATGAATTATGAATCATATTGTATTAATTGTAAAGAAAATTAAACAAGTACCTGGAATTGCTCATCACTCCATAAGTTATCAATCAACCACTGCCAGTCCTCTGGCGCAACATGACTAGGACACTGTTTTTGTTGTGCAATAGGTCTTGTACAGTTTGTGGCGTCTTACATTGTACTTTCGCTCAACTTGTGTCATTACACATTGGTAGTCTGCCATTGAGATCTCAGGGAATTTTGCCTACAGAATGATAGTAGATCATATGAACAAACAATGTACAAAATCATGACAGCAAAAAGAAAACAAAAATGTACAAATGAAATATGCTAATGTGTCCGAAAATTCAAGAACTCCAACCAGATGACATACCTTCAATAAATTCCAAATTGATGACATGGTTCCAGGAAAAGCTTTTTCAATGACTTTCCACTTCTTCACCTTAAGGGGGACCTCTTGTCGCACACAGACAGTGACCTCACTTTTAAAGACACTTGCGTGCCTACCATAGACTTTTCCAAACTGTGCAGCAAATTGAATGTCTAGTGGCACACCCCTTGCTCTCAGTTTTGCAAGTGTTCCATTAATGGTGAGACCCCTACCTTTCCTACGTTTGAGACCTAATTGAAGGAAGAAGTATTTTAATTTATTTGCTTGTGAAGGAATAGATCAATGAAGTGAAGGTAAATATGTTAAATACCTGTGTTTCCGGTTGGTCCCATCCGTCCCTCATTCCTAGTATTGGTTATGACTTGTCGAGCAGCATCATCCGAAGTCTCCATCTGGTTCACGGATGGACGAACTTGGGAAACCATTTTGACCTACAAAATAAGAAATGAGTACAAACAGATCTACTACAGGATTACAAACCAAATTGACTAAGATAGAAATCCCCACAAAACACCGATATACTATAAGATTGAGAACCAAATTAACTAAGAAAGAGAATCCCAATTAAAAATGGATATTAAGTTGCATCTAATTAGGAAATTAACACAAATCATAAATGCAGAAAAACAAGACGGAGAGAGTGGACGCCAGAAGGGGCAGGTCATATCCCTGCGACACCACGCTATCATCAATATGTAGATGTTGCGGCACCAGCGCCGCCAGAAGATCCATAGGACTGCAGTGATTTGGAGATGGTGGTTGTGTGATTGTGTCCCGGCAGTGGTGGGTGTAATCTCTCAAAGATGGATGTACTCTAGGGCTATGCAGTGAATAAAAAATGGGGAATGCCGAATGGATCCTATAGGATTGCGAGAATAGCAAAGAGCCATAGTAGATTTGTTTCTTTACCTTTGACTGCAAGTGTGCGCAGGGATCGAGAACTCTAGATGCGAATGGATTGTACTAGATGGGCAGCCTTATATAGTGAGGTAACTCTGTCAATTTGGCGGGAGTAAAATTTTGCTGGCAATTACTTTTGGAGGGAAAGTATGTTTTGCTGGCCGATTTATGCGTGCGTGCATAACAAATTAGTTTGTTTGTGCTGATCCAAAATATTTGTTCACCAGCATTTGTTAACAAGCTCTCGTAAACAAATATGGCAATTGTTTAATGAATCAATAACCTGTGGAGTGAAAAAAAATGATACACACATGCACATTAATTGTTGATGTGGGTTGGCACCTCCCTGCATGGAAAACTAATAAGCCAGCTCATTAACATTAACAAAGCTAATACTAAAAGCTTAGCTTGGCTCAGCTCGTGAGCTGGTTCATTAATAAGCATATGCTCATTATCTAAAAAAAATTAATAAGCATATGCTATATTAGATGCTAGACATCTAGCAAAATCATGTCTCTGCCATAGGGTATCGTGGTCTTGTGATAATAATTTGGTGTTAGATTATATAAAGATTGATACATGTTTGAATGACTGCATTCTTTTCAGAGGTGAATATGCTAAAGCTGAAACATGCCCTGTTTGTGGAATTTCAAGATGGAAAGAGGATGGAGAAAATAGTGCTCGCAAGTCAAGGAGGAGAAAAGCTAGGAAAGTTCCGCAGAAGGTTTTATGGTACTTTCCTTTGATCCCAAGATTAAAGCGTATGTACATGTGTTCAAAAATAGCTGTTCATATGCGATGGCACAAAGAGAAGCTAGTTGATGATGGATATATGAGACATCCAGTAGATTCTAATGAATGGAAGAACTTTGACAAGAATTTTGAATCATTCGCATTGGACGCACGGAATGTTAGGCTAGGCCTTGCTAGTGATGGATTCAATCCTTTTGGAAATATGAGCTCATCATATAGCATATGGCCAGTTGTTATTGCTATATATAACTTACCAACTTGGATGTGCATGAAAGATTCTTATATGATAATGTCAATGCTTATCCCTGGGCCTAAAGCACCTGGAAATGACATAGATGTATACTTGCAGCCATTGATTGATGAATTGATACAGCTATGGGAAGGCGTGCCAGCCTATGATGCTCATGCAAAGTCCTCTTTTAAGCTACGGGGAATGCTGCTTTGGACAATCAATGATTTCCCTGCATATGGTAATTTATCAGGCATGAGCACGAAAGGAAAATATGCATGTCCTTCTTGTCACATGGACACTTGGTCCCATAGGCTCGTTAATGGACACAAATACTGCTATATGGGACATCGTCGCTTCTTGCCAATAAGACATTCGTGGAGGAGCAATGCAAAATCTTTTGATGGCCAAAAGGAAAGACGTAGCGCCCCAAAAGCGTTGTCAGGAGATGACATTATGCGTCAATATCAAAATTTCAATCAGGTACTCTACTAATTATGATATATTTATGCTTGTATCCTATCTGGTCAATCTGAAAGTAAATTATTATACTATTTGCTATTCTATGCCTTATTTGGTATTACTTTGAGTATAAGAATATGAGTAGTATATTATTGTTGACATCACTTTATGCATTCAGGTGAAATTTGGGAAACATAACAATAAGAGAAAACGCTCAAGCACATTATATGGAGTTTGGAAGAAAAAAAGTATATTTTTCCAGCTGCCATATTGGTGTACGTTATCGATAAGACATAATCTAGATGTCATGCACATTGAAAAGAATGTTTGCGATAGTATTGTGGGTACCTTGTTAAATCTGGATGGGAAGAAAAAGGACAATATTAAATCCCGGTTTGATTTGGAACTCATGAAAATACGACCTGAACTTCATGCACCTCCAACTGGTGATGGGAAGATCTTATTTCGTCCTGCATGCTATACAATGACACCAGCTGAGAAGAAAGCATTTTGTGAGTTCCTTAGAGAAATAAAAGTGCCAGATGGATACTCTTCAAAAATTTCACACTATGTGGATGCAACAAAAGCTAAAATATCAGGGATGAAGTGTCATGATTGTCATGTATTTTTACACAGATACCTTCCATTTTCTATTCGTGGAGTTCTGCCTGCTGATGTTTGTGAGGCTATAATTGAGCTATGTAGCTTTTTTAGAGAAATTTGTTCCAAGAAATTAGATACTGAAATTCTCAAGAAGCTTGCATCATCAATTGCTGTTACCCTCTGTAAGTTAGAGATGATTTTCCCCCCTTCATTCTTTGATGTAATGTTGCATCTACCAATCCATTTAGCCCAGGAAGCTATTGCTGGTGGACCTGTCCAGTATCGGTGGATGTATCCCATTGAAAGGTTTTTGCGAAGGTTGAAGTCTTTTGTAAAAAACAAAGCTCGCCCTGAAGGATCAAACAAGAATCCTGCAAGGAGTTGAAACAAGAATATTTTGCAAGAATGTGTAAATTTTTGTTCTATGTACCTGCAAGGAGTTGAAACAAGAATCAATCGACCAAGTCGAATCGAGGACGTGCAGAGTGACAACAGCAGTACAAAATTTCAGATATTTGGTACTGTTGGCAGGCCACTCCTTGGTAACAAATACTGCCAGATGGATATGAATGAGTTGGAGAAAGCTCGGATATATGTTCTAAAGAATTATGAAGAAATATCAGAATACGCAAAGTAAACAACTACTACTTACTCTCATTTTCTAATATGTAAATGCTGTCAAAATTTAACGTACATGTACATGTCTTGCAGCATTTACAAAGACCAACTTAGCATCCAGAACAGTAAAGGTGTGGAAAAGCGCCATGACAAAGAATTTTTTGTATGGTTCAAGAATCATGTATGTACACGCCATAATAAAAGTATTTTTTTTACATTTTACAACTATTTGTAACCTGTATAAACATTCTTCCAGATATTTGAGAAACATTCCAAAGGATCTCCAGATATATCAGAAGAGTTGTTTGCTCTAGCAAGAGGTCCTGATGCTCGAGTAACCCATTACACAAGTTATATGATTAATGGATGGAGATTTAACACCAGGGACCGAGACAAGTTGGTTCAATCACAAAACAGTGTAGTCTTTGTTAAAGGTGATGAAGCCAGTGGAAGCAAAGACTATTTTGGTGTCTTGACAGATATTATCAAGCTAACATATGGTACTTTTAGTGTCATATTGTTTAAATGTGAATGGTGGGATGTACACACTAAAAGGGGAGTAAAAGAGGACAAGCATAGATTTACCTTAATTAATACTTCCCGTACAGTGCCAATTGATGAGCCATATATTTTGGCAACACAAGCTGAGCAAGTACATTATGTCAAAGATACTAGAGACCCTAAATGGTTTGTTGTAGTCAAGACGAAGCCACGTGATTTGTATGACTTTCCTCCTACAGAAGAAGAAGAAGAAAATGATCCAACTTTATCAAATAAGTCTAGTTCTGAAGCATGCCAAGAGAATGAGCATATCACGGCTGCATTGAATTACACTACAATTGATGATGGTGACTTCCCTACGGTTCTCAGTAAAGATGGAGTCGAATGTGAACCCATTGAAGCAGAACCAGTAACACATTCTGAAGATGATCTGTTTGAAGAGGAAGAAGAAGAAGAGGAAGATTCTGAAAGTGATGGCGCTGAGTATACAGATACAGATGATGAAAGTGACATCCAAACTGAAGAAGATGTAGATGACAGTTAATTTATAAACTATATTCATGTTACTGCAAATTTACACAAACACAGCAAAAATATGTTGGCCTGAAATACAATTCTTTGATATTGAGGACATTAATTGCCTATGTTTAATACAATATACTAAGTAAATTAATTTCTTGCAGATTATGAAATGTAACTAATCCATATTGAGGCCTATTTGACTGATTAGTAGAAACTAGCATGTACTACTAAGTATTGGGCCCTGTTGCAACTCTGTAAGTCACGGTCAGATATATAATCCATACTCCTTGAACAGCTGACCATGTTGGATAATAGCTTTTTTCAGATAAAGAGGATAGGGATCTGGACACATCTGTGTATCCATCTGCTCAGGAGTATTTCTCCCACGTTCCTCACCTTACCCTATGTTTCCCTCTCGGTTTTCCCCTTTTGTTTTTTTGACTGAACTGACTTCCCCTTTTCCATACCACTGCAGTACTGCAACTCCCACTCGAATCTATTGTTTTGGCTTGGCTCACATAGATCCAGCCAATCCATGGTACTAATCAACAAAGCATCAAGATATAGTAGCCGGCAGCACCAAGCAGATGAAATGGAACTTACCACTGCTGGTTCTGCCGTCAGTAAGCTCGGGGTGCGCCTGCGTCCACCACTCGTGCTCCGATCGTGCCGCGTCCCACTACCACTGCTCAACCTCCCTCTGAAGCTTTGGATTGAGCTCGACGCAACTCGAATGCAGGATGGATCTCGCCACGACCCCGCCGCACCGTATCGAGTTCGCCGTGCACCTGCCGTCGGATCGAGGTCGCAGAGCTCCTGTAGCCACCACTACGGGGCCTGATGTTGCAGCAGCTCTACCTTCAATAGCAGCCTCAGCGTCTTGGCCTGCAATCCTTCCATCGTGCCAAGGCTCATGCCTTCGGCCGCCGGGTGCTGCTGCGGTGCTGCCTGCTCTGCGTGAGCCTGACT
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CDS seq | ATGTGTTACTGGTTCTGCTTCAATGGGTTCACATTCGACTCCATCTTTACTGAGAACCGTAGGGAAGTCACCATCATCAATTGTAGTGTCAAAATGGTTTCCCAAGTTCGTCCATCCGTGAACCAGATGGAGACTTCGGATGATGCTGCTCGACAAGTCATAACCAATACTAGGAATGAGGGACGGATGGGACCAACCGGAAACACAGGTCTCAAACGTAGGAAAGGTAGGGGTCTCACCATTAATGGAACACTTGCAAAACTGAGAGCAAGGGGTGTGCCACTAGACATTCAATTTGCTGCACAGTTTGGAAAAGTCTATGGTAGGCACGCAAGTGTCTTTAAAAGTGAGGTCACTGTCTGTGTGCGACAAGAGGTCCCCCTTAAGGTGAAGAAGTGGAAAGTCATTGAAAAAGCTTTTCCTGGAACCATGTCATCAATTTGGAATTTATTGAAGGCAAAATTCCCTGAGATCTCAATGGCAGACTACCAATGTGTAATGACACAAGTTGAGCGAAAGTACAATTGTCCTAGTCATGTTGCGCCAGAGGACTGGCAGTGGTTGATTGATAACTTATGGAGTGATGAGCAATTCCAGAAACGGAGCAAACATAATTCCATTAACAGATCAAAGCAAGAGATGAAATCACATGTTGGAACAAAGTCTATAGTGCAAATAGCACATGAACTGAACAATCTGCAGACAGTAGCTGAAACAAACCAGGAAAGGATTGCAGCTGCTCAAATCCCAATGGTTGAACACTTTGCATTAGTCCTTGGCAGAAAGCCAAACCACTCGCATGGAGTTGGTATTAGTGCAATCAATGAGGGAGCTCAAGAGAGGTACAGAGTTAATGCACAAGCAGAAGCTGCACAACAGCAAGCCAATGAAGCACATCAACAAGCTGCTGCTTTGCTAGAAGAAGTTCAAAAATTGACAGTAGAAAACTTGCAATTAAAGGGCGAGTTGCAGTCTCAGCGTGAAGAGTTGAATTCTCAGAAAAGAACCGTAGAGGAACAAAGTGGTCACATGGAGTGTTTGTTGGACCAGAAACTTGAGGAAAGAATGAAAGCAATGTGGGCACGCATGGGTGGCACTGGTGGTGCTTCATCTTCAAGTGTCCCAAACAATTAA
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Protein seq | MCYWFCFNGFTFDSIFTENRREVTIINCSVKMVSQVRPSVNQMETSDDAARQVITNTRNEGRMGPTGNTGLKRRKGRGLTINGTLAKLRARGVPLDIQFAAQFGKVYGRHASVFKSEVTVCVRQEVPLKVKKWKVIEKAFPGTMSSIWNLLKAKFPEISMADYQCVMTQVERKYNCPSHVAPEDWQWLIDNLWSDEQFQKRSKHNSINRSKQEMKSHVGTKSIVQIAHELNNLQTVAETNQERIAAAQIPMVEHFALVLGRKPNHSHGVGISAINEGAQERYRVNAQAEAAQQQANEAHQQAAALLEEVQKLTVENLQLKGELQSQREELNSQKRTVEEQSGHMECLLDQKLEERMKAMWARMGGTGGASSSSVPNN |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsAzu_09g0006250 | OsAzu_09g0006250.01 | Chr09 | 10574540 | 10581629 | - | NAM | ||
CDS seq | ATGTGTTACTGGTTCTGCTTCAATGGGTTCACATTCGACTCCATCTTTACTGAGAACCGTAGGGAAGTCACCATCATCAATTGTAGTGTCAAAATGGTTTCCCAAGTTCGTCCATCCGTGAACCAGATGGAGACTTCGGATGATGCTGCTCGACAAGTCATAACCAATACTAGGAATGAGGGACGGATGGGACCAACCGGAAACACAGGTCTCAAACGTAGGAAAGGTAGGGGTCTCACCATTAATGGAACACTTGCAAAACTGAGAGCAAGGGGTGTGCCACTAGACATTCAATTTGCTGCACAGTTTGGAAAAGTCTATGGTAGGCACGCAAGTGTCTTTAAAAGTGAGGTCACTGTCTGTGTGCGACAAGAGGTCCCCCTTAAGGTGAAGAAGTGGAAAGTCATTGAAAAAGCTTTTCCTGGAACCATGTCATCAATTTGGAATTTATTGAAGGCAAAATTCCCTGAGATCTCAATGGCAGACTACCAATGTGTAATGACACAAGTTGAGCGAAAGTACAATTGTCCTAGTCATGTTGCGCCAGAGGACTGGCAGTGGTTGATTGATAACTTATGGAGTGATGAGCAATTCCAGAAACGGAGCAAACATAATTCCATTAACAGATCAAAGCAAGAGATGAAATCACATGTTGGAACAAAGTCTATAGTGCAAATAGCACATGAACTGAACAATCTGCAGACAGTAGCTGAAACAAACCAGGAAAGGATTGCAGCTGCTCAAATCCCAATGGTTGAACACTTTGCATTAGTCCTTGGCAGAAAGCCAAACCACTCGCATGGAGTTGGTATTAGTGCAATCAATGAGGGAGCTCAAGAGAGGTACAGAGTTAATGCACAAGCAGAAGCTGCACAACAGCAAGCCAATGAAGCACATCAACAAGCTGCTGCTTTGCTAGAAGAAGTTCAAAAATTGACAGTAGAAAACTTGCAATTAAAGGGCGAGTTGCAGTCTCAGCGTGAAGAGTTGAATTCTCAGAAAAGAACCGTAGAGGAACAAAGTGGTCACATGGAGTGTTTGTTGGACCAGAAACTTGAGGAAAGAATGAAAGCAATGTGGGCACGCATGGGTGGCACTGGTGGTGCTTCATCTTCAAGTGTCCCAAACAATTAA
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Protein seq | MCYWFCFNGFTFDSIFTENRREVTIINCSVKMVSQVRPSVNQMETSDDAARQVITNTRNEGRMGPTGNTGLKRRKGRGLTINGTLAKLRARGVPLDIQFAAQFGKVYGRHASVFKSEVTVCVRQEVPLKVKKWKVIEKAFPGTMSSIWNLLKAKFPEISMADYQCVMTQVERKYNCPSHVAPEDWQWLIDNLWSDEQFQKRSKHNSINRSKQEMKSHVGTKSIVQIAHELNNLQTVAETNQERIAAAQIPMVEHFALVLGRKPNHSHGVGISAINEGAQERYRVNAQAEAAQQQANEAHQQAAALLEEVQKLTVENLQLKGELQSQREELNSQKRTVEEQSGHMECLLDQKLEERMKAMWARMGGTGGASSSSVPNN
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | 0.0 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0337500 | RBH | 0.0 | 0.000000 | 0.000000 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g16780 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | Os09g0337500 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0020550 | SBH | 0.0 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0006270 | RBH | 0.0 | 0.0 | 0.0 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0006480 | RBH | 0.000000 | 0.0 | 1.898370 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0006320 | RBH | 0.0 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0006380 | RBH | 0.0 | 11.491355 | 7.063091 |
Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0006510 | RBH | 0.0 | 0.0 | 0.000000 |
Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0006190 | RBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0020680 | SBH | 0.000000 | 0.000000 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0020400 | SBH | 0.528421 | 0.423857 | 0.274713 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G006580 | RBH | 0.0 | 0.0 | 0.278309 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0020380 | SBH | 0.000000 | 4.312307 | 1.639583 |