Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_09g0337300 OGI:09030920 | 14/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr09:10252139-10254682
Gene Symbol -
DNA seq

ATCCATCCATCCGACCGAGTCGCTCACGTCTCTCTCTCGCTCTTGCTCTCTCGCCTCTCTCTCTCGCCTCCCTCTATCCCTCTCTCTCTCTCTCTCTCGGCGGCCCGGCGGTGGCCCGTCGAGGTAGGCGTGGCGGTGGCTGGCAACGGCGCGCCCTCCCCTCCGCCGGATCTAGCTGGAGGGGAGGTGGTGGACCTTGGGGACGGCCGGGCGGTGGTCCGGTGGAGGCGGTTGCGGCGGCCGCGCCCTCCCCTCCGCCAAATCCGGCCGGAGAGGAGGCAGCGGACCTCGGCGGAGGCGGCACAGCGGCTGGCGGCGGACCTCGGCGGAGGCGGCTGGCGGCGGCCGTGCCCTCCCCTCCGCTAGATCTGGACGGAGGGGAGGTGGTGGACGTCGGGGACGGTCGGGCGGCGGTCCAGCGAAGGCGGTGGCGCCAGCGGCGCCCGATGGATTTGTTGGATGATTTTATAGTTCTTTTAGATTTTTTTGTGATTTGTGGATGATTTTATTTCTGAATATGTTTCATCTGTGATCTGTGATATGTGATTTGTGATTCGTGATTTGTGGGGGTTTGGGGATGGAGTAGTGACGATGATTGTGAGTTCCGGCTCGATTCGAGTCGGCTCTTTTTTTTTTTGGCTCGTGCAAACTTATAGGTGCCGGTTCTATTTTGGTATAGGGGTCGGTTGTTTTTATTGGTGCCGACCAATAGGTGCCGGTTGGAAAACTGGCACCTATAGCCGGTTCCCAAGCGGCACCTATGATGGTATTTTACTAGTGTCAGGTGTTTGGAATTTTCGAAGATATCACTTAGGGTCTTTTTTTTTTTTCTGGGCATGTGGTTTTGACAAGCCCTATACATATCTTTGTATAATTTTCTCCTATTATATCAATATAGGAGGCACAACTTTTGCCCACTCTTAAAAAAAGATATTAAAGAAAGTTCCAAATGCATGCAGATGCGACCGGAATGCTTTTGAATTGGAACAGGGACCTTACTGGAAAAGGTGACTCACACGGCCGGACACCTCTCCATTTTGCTGTATCGATAGAACCACCCACGAAGATTCCATATTACCACAAGATATTGTTCTCCATCATGCGCCACATAGACATATACACTCTTTGTTTGGACCGGTTCCTCTATCCTAGGAAAACCAGGGGAGATAGCTTGACTCTGACTGGTATGTTGATGGATGCTGATGAATCCTCAGCGTATCAGCCTGACGACAAGGGTTCTTTCCCCATCCATGTCGCTGCAGCAGAGGGTAATGATGGCACGATCAACATACTGCTCAATAAGAGCCCCAATTGTGCCACCTTGCGCAATGCCCAGGGAAGAACATTTCTGCATATTGCTGTTGAGAACGGAAGACACACAATCATAATGTTTGTTCGCAGGAGAAGAAGGCTGGCAGCTAAAATTATGAATTTGCAGGACAACGATGGAAACACCGCCCTACACTTGGCTATACAAGATGGGGATCTGCATGCTGTTTTATGTCTATTGATGAACCCAGTAGTAAAAGTTGATTGTCTGAACAAGGAGGGTCTAACACCTCTAGATATATCAAGGAAGCTGATACCAGAAGGGCTTCTTCATGGATCGGTAATAACAATCCCCTCTCCCCACCCCCGCGCGGAAAATGCATGTTCTTTTTGCACAAATTTGGTATGTACTTCTTGATGCTCATGCATGCTTGTGCTTATTACAGCATCAACGAATTTGGATAAAGAGGTCACTACATCTTGCGAATGCACATCATGCTAACCCTTCCCTTGACCATCGTCAAGAGAAGTGCATTTGCCGAACGGTCCGTGAGGAAAGAGATTCTAAAATAGTTGAAAAAGATGACGATGAACAAGAAGATTCAAAGACAATTACGGAGTCTACACAAGTTATGGCCGTCTGCTCCACACTCATTGCAACTGTGGCATTCGCAGCAGCTTTTACATTGCCTGGAGGTTATAGAGCAGATGATCACACCAATGGCGGCACGCCGACATTCGTCGGAAGCTACGGTTTCGATGCATTCGTCTTGGCCATCACATTTGCATTCGTCTACTCCTTGTTGGCTACATTTAGCCTCGTGTATTCAGGAATGACCAAAGTTGACTACAGCATCCGCTTGGAGCACCTTAACTCGGCCAATAGCTTGGTCTGGCTATCAATCAGGTGCTTGCTAGCTGCATTTGCATTAGGTTTATACGTTGTCCTGGCACCAGTTGCTCACAAGACTGCCTTGCTTATCTGCCTCATGTGTTCCGTTGGGTTATTGCACGGGCATACGTCAATGAAGACACAGATCCGCATGGCCGTGCTCTTACAGGGAAGGATTGGGTTTAAGGTGTGGTGGATTTTGGGCAGGAAGATACTTCGAAACTTTCTGCACTCATTTTGGCCCTTCCTGATTATCTTTGGTTGGCCAGCTTATCTGAAATGGAGGCACCAACAGTAGTTAGACTCATATATATGACCACCAAATATGTCGTATTTGTACCGCTGATCACCATAGATTGTATTTCTTATAGTATCCCTTTTGC

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CDS seq

ATGCATGCAGATGCGACCGGAATGCTTTTGAATTGGAACAGGGACCTTACTGGAAAAGGTGACTCACACGGCCGGACACCTCTCCATTTTGCTGTATCGATAGAACCACCCACGAAGATTCCATATTACCACAAGATATTGTTCTCCATCATGCGCCACATAGACATATACACTCTTTGTTTGGACCGGTTCCTCTATCCTAGGAAAACCAGGGGAGATAGCTTGACTCTGACTGGTATGTTGATGGATGCTGATGAATCCTCAGCGTATCAGCCTGACGACAAGGGTTCTTTCCCCATCCATGTCGCTGCAGCAGAGGGTAATGATGGCACGATCAACATACTGCTCAATAAGAGCCCCAATTGTGCCACCTTGCGCAATGCCCAGGGAAGAACATTTCTGCATATTGCTGTTGAGAACGGAAGACACACAATCATAATGTTTGTTCGCAGGAGAAGAAGGCTGGCAGCTAAAATTATGAATTTGCAGGACAACGATGGAAACACCGCCCTACACTTGGCTATACAAGATGGGGATCTGCATGCTGTTTTATGTCTATTGATGAACCCAGTAGTAAAAGTTGATTGTCTGAACAAGGAGGGTCTAACACCTCTAGATATATCAAGGAAGCTGATACCAGAAGGGCTTCTTCATGGATCGCATCAACGAATTTGGATAAAGAGGTCACTACATCTTGCGAATGCACATCATGCTAACCCTTCCCTTGACCATCGTCAAGAGAAGTGCATTTGCCGAACGGTCCGTGAGGAAAGAGATTCTAAAATAGTTGAAAAAGATGACGATGAACAAGAAGATTCAAAGACAATTACGGAGTCTACACAAGTTATGGCCGTCTGCTCCACACTCATTGCAACTGTGGCATTCGCAGCAGCTTTTACATTGCCTGGAGGTTATAGAGCAGATGATCACACCAATGGCGGCACGCCGACATTCGTCGGAAGCTACGGTTTCGATGCATTCGTCTTGGCCATCACATTTGCATTCGTCTACTCCTTGTTGGCTACATTTAGCCTCGTGTATTCAGGAATGACCAAAGTTGACTACAGCATCCGCTTGGAGCACCTTAACTCGGCCAATAGCTTGGTCTGGCTATCAATCAGGTGCTTGCTAGCTGCATTTGCATTAGGTTTATACGTTGTCCTGGCACCAGTTGCTCACAAGACTGCCTTGCTTATCTGCCTCATGTGTTCCGTTGGGTTATTGCACGGGCATACGTCAATGAAGACACAGATCCGCATGGCCGTGCTCTTACAGGGAAGGATTGGGTTTAAGGTGTGGTGGATTTTGGGCAGGAAGATACTTCGAAACTTTCTGCACTCATTTTGGCCCTTCCTGATTATCTTTGGTTGGCCAGCTTATCTGAAATGGAGGCACCAACAGTAG

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Protein seq

MHADATGMLLNWNRDLTGKGDSHGRTPLHFAVSIEPPTKIPYYHKILFSIMRHIDIYTLCLDRFLYPRKTRGDSLTLTGMLMDADESSAYQPDDKGSFPIHVAAAEGNDGTINILLNKSPNCATLRNAQGRTFLHIAVENGRHTIIMFVRRRRRLAAKIMNLQDNDGNTALHLAIQDGDLHAVLCLLMNPVVKVDCLNKEGLTPLDISRKLIPEGLLHGSHQRIWIKRSLHLANAHHANPSLDHRQEKCICRTVREERDSKIVEKDDDEQEDSKTITESTQVMAVCSTLIATVAFAAAFTLPGGYRADDHTNGGTPTFVGSYGFDAFVLAITFAFVYSLLATFSLVYSGMTKVDYSIRLEHLNSANSLVWLSIRCLLAAFALGLYVVLAPVAHKTALLICLMCSVGLLHGHTSMKTQIRMAVLLQGRIGFKVWWILGRKILRNFLHSFWPFLIIFGWPAYLKWRHQQ

Function Ankyrin repeat-containing protein ITN1 [UniProtKB/Swiss-Prot:Q9C7A2]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_09g0337300 OsNip_09t0337300-01 Chr09 10252139 10252775 + RAP2018-11-26
CDS seq

ATCCATCCATCCGACCGAGTCGCTCACGTCTCTCTCTCGCTCTTGCTCTCTCGCCTCTCTCTCTCGCCTCCCTCTATCCCTCTCTCTCTCTCTCTCTCGGCGGCCCGGCGGTGGCCCGTCGAGGTAGGCGTGGCGGTGGCTGGCAACGGCGCGCCCTCCCCTCCGCCGGATCTAGCTGGAGGGGAGGTGGTGGACCTTGGGGACGGCCGGGCGGTGGTCCGGTGGAGGCGGTTGCGGCGGCCGCGCCCTCCCCTCCGCCAAATCCGGCCGGAGAGGAGGCAGCGGACCTCGGCGGAGGCGGCACAGCGGCTGGCGGCGGACCTCGGCGGAGGCGGCTGGCGGCGGCCGTGCCCTCCCCTCCGCTAG

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Protein seq

IHPSDRVAHVSLSLLLSRLSLSPPSIPLSLSLSAARRWPVEVGVAVAGNGAPSPPPDLAGGEVVDLGDGRAVVRWRRLRRPRPPLRQIRPERRQRTSAEAAQRLAADLGGGGWRRPCPPLR

Gene Transcript Chromosome Start End Strand Source
OsNip_09g0337300 OsNip_09t0337300-02 Chr09 10252214 10254682 + RAP2018-11-26
CDS seq

ATGCATGCAGATGCGACCGGAATGCTTTTGAATTGGAACAGGGACCTTACTGGAAAAGGTGACTCACACGGCCGGACACCTCTCCATTTTGCTGTATCGATAGAACCACCCACGAAGATTCCATATTACCACAAGATATTGTTCTCCATCATGCGCCACATAGACATATACACTCTTTGTTTGGACCGGTTCCTCTATCCTAGGAAAACCAGGGGAGATAGCTTGACTCTGACTGGTATGTTGATGGATGCTGATGAATCCTCAGCGTATCAGCCTGACGACAAGGGTTCTTTCCCCATCCATGTCGCTGCAGCAGAGGGTAATGATGGCACGATCAACATACTGCTCAATAAGAGCCCCAATTGTGCCACCTTGCGCAATGCCCAGGGAAGAACATTTCTGCATATTGCTGTTGAGAACGGAAGACACACAATCATAATGTTTGTTCGCAGGAGAAGAAGGCTGGCAGCTAAAATTATGAATTTGCAGGACAACGATGGAAACACCGCCCTACACTTGGCTATACAAGATGGGGATCTGCATGCTGTTTTATGTCTATTGATGAACCCAGTAGTAAAAGTTGATTGTCTGAACAAGGAGGGTCTAACACCTCTAGATATATCAAGGAAGCTGATACCAGAAGGGCTTCTTCATGGATCGCATCAACGAATTTGGATAAAGAGGTCACTACATCTTGCGAATGCACATCATGCTAACCCTTCCCTTGACCATCGTCAAGAGAAGTGCATTTGCCGAACGGTCCGTGAGGAAAGAGATTCTAAAATAGTTGAAAAAGATGACGATGAACAAGAAGATTCAAAGACAATTACGGAGTCTACACAAGTTATGGCCGTCTGCTCCACACTCATTGCAACTGTGGCATTCGCAGCAGCTTTTACATTGCCTGGAGGTTATAGAGCAGATGATCACACCAATGGCGGCACGCCGACATTCGTCGGAAGCTACGGTTTCGATGCATTCGTCTTGGCCATCACATTTGCATTCGTCTACTCCTTGTTGGCTACATTTAGCCTCGTGTATTCAGGAATGACCAAAGTTGACTACAGCATCCGCTTGGAGCACCTTAACTCGGCCAATAGCTTGGTCTGGCTATCAATCAGGTGCTTGCTAGCTGCATTTGCATTAGGTTTATACGTTGTCCTGGCACCAGTTGCTCACAAGACTGCCTTGCTTATCTGCCTCATGTGTTCCGTTGGGTTATTGCACGGGCATACGTCAATGAAGACACAGATCCGCATGGCCGTGCTCTTACAGGGAAGGATTGGGTTTAAGGTGTGGTGGATTTTGGGCAGGAAGATACTTCGAAACTTTCTGCACTCATTTTGGCCCTTCCTGATTATCTTTGGTTGGCCAGCTTATCTGAAATGGAGGCACCAACAGTAG

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Protein seq

MHADATGMLLNWNRDLTGKGDSHGRTPLHFAVSIEPPTKIPYYHKILFSIMRHIDIYTLCLDRFLYPRKTRGDSLTLTGMLMDADESSAYQPDDKGSFPIHVAAAEGNDGTINILLNKSPNCATLRNAQGRTFLHIAVENGRHTIIMFVRRRRRLAAKIMNLQDNDGNTALHLAIQDGDLHAVLCLLMNPVVKVDCLNKEGLTPLDISRKLIPEGLLHGSHQRIWIKRSLHLANAHHANPSLDHRQEKCICRTVREERDSKIVEKDDDEQEDSKTITESTQVMAVCSTLIATVAFAAAFTLPGGYRADDHTNGGTPTFVGSYGFDAFVLAITFAFVYSLLATFSLVYSGMTKVDYSIRLEHLNSANSLVWLSIRCLLAAFALGLYVVLAPVAHKTALLICLMCSVGLLHGHTSMKTQIRMAVLLQGRIGFKVWWILGRKILRNFLHSFWPFLIIFGWPAYLKWRHQQ

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.256360 0.882954 1.299679

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_09g0330700 SBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os09g16760 RBH 0.129419 0.230236 0.181411
Nipponbare | IRGSP 1.0 | RAP-db Os09g0337300 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_09g0006240 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_09g0006260 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_09g0006470 RBH 0.0 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_09g0006310 RBH 0.000000 0.000000 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_09g0006190 SBH 0.0 0.0 0.000000
Minghui 63 | MH63RS3 | HZAU OsMH63_09G0182500 RBH 0.8621835 1.103852 0.2446465
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_09g0006350 SBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_09G0158000 RBH 0.9564085 4.190374 0.322035
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_09g0006390 RBH 0.000000 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_09g0006180 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_09g0006240 RBH 0.950272 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_09g0006160 RBH 0.170946 0.0 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_09g0006230 RBH 0.290376 1.112448 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_09G006570 RBH 0.011180 0.0 0.000000
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_09g0006460 RBH 0.042544 0.000000 0.072732
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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