Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0006390 | OGI:09030920 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:10879643-10885037 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgacgtcgaacaatggagagaagccgccgcataccgccgcggcggcggcggcggcgacggcaaatgaggccgtgccgtcgtcggctaccaccgagcagcaggaggcgcgtccggatgatgagcgggcgccaaaggatcacaccggctgcgaatgcaagcccaaggtggtaatgctcccggagctactacgagccgccagtcatggcgatctccagaggctgcgcgttcttctaggtgtcctacacgacgatgagtcgccggcaccgacgacgacgaccagccaagacgacgacgctgtcgtcctggaggtttatcgctctttacccctactaccaccaccctctactactgcaggtgaaggtgaagatgaagggacgttgtccctcctggagggaaccacgtttcagggggactccgcgctgcatgtggtggccagcagcggagacgacggcgacttcttgaagagcgcaaggctgatctatggcaaggccaggcacctcctcgaggcgaccaacaacaatggcgatacgcccctccactgcgctgccagagctgggaatgttaagatggtcacgcatctcctcgagctggctggaggcgatggcgccggcgatcaacggaagaagctgatccttaggaaaaaaaaccaccagcatgagacggtgttgcacgaggcagtccgcctcggcaacaaagatctgatcgacaagctgatgacggaagatccagagctagctcgtcatccaagcaacggcgccacttcaccgttgtatctggctgtgatcttgccaaatccacaagttgcgatgcagctgcatgggtatgataaaatgctgtcctactcgggacctgacggacaaaatgtcttgcacgctgctgttcttcgacaaagaggtacgtaattcacaaataccttgtgcgtgtactgtttgatcccacaatatataataacaaatgcatatatggttcgattcacagtacttctttcttttttggccttttgatcctggcatatttattctttctatcaacttcagttttcactctatatatgtttcaagtagtatttcaatttgtatattacgcatgccaccagggttagcaatctccaattgcgatttttgcctggggtggctgaaagaaccgaatttttttgtacttttttggccaattttttttgaaacttggatgaatttgaataaaatttgatcaaattcataaaaaatggAaaaaaacaaaaaattcaggcaaggtatgtgcttgccgatgggggcgaaattacagaaattttggaattaattttgttccgaaaaattgcaatcactgcatgccacataatactgtactattcatatatcaagagggAaaaaaaaagttaaaccaacttacaatttggaacggaggttccaaattagagaaaggaaatgacaaagtgatatctctagcatgtaagttttgtgattgaaatatacacttgaattgtacaacaattttcagatctcatttatgtggatataagtaattggaaactggaataatacaatacacatatgtaatttagtcaatatatatagagacatgtttgaagcaagcaagggtcaatataggacaaaatatattatatagtcaatataattttgagtaaatttcaaattgatcaaattgtcacaaaactgtatattttaaatgatctactctctccgtcccaaaatataagTtttttttagacctcggcacggtcttcgagatgctattttgaccaacaaatatctacaaaagtaaattattttaaataaaaagagttgcatattataataattcgtttaacaataaatatagtagcatcaaatttacatgattaatctttttttatccttttgctattagtagttaaaaattaaaatgtttgatttggcactattctaaaaatgcttatattttgtgacagagggagtattacaaaactacttatattacaaaactacaaatttaagatggatcatcgcaaaactattgaattaataataaagttataataaaactacaagtctagtgccatttaaccacaaaactacaaagtatataaactcctatctaacagcagcactgttaaggatttaaactctaaaatagtattgtgataacccactttagcactggtagggatttaaactctaaaatagtgttgtggtaacccacacttttgttaaatctgtagtttttcttcatactccaccttaaattttaatgataagcttggttgcaaatttctagttttattatacattccttaaattatagatttatgatcatttgatcaaagcatatgtaattttataaaatttactcgtataagattaaggaagttcatattactagaaataagcttatagagatcggcattataggtgccggaacagttaaaaccagtacctataatgctttcctctcccccgtaggctaaaaactttaagcaattataggtattggttttaaagaaaaaccggcattatagtataggtggcggttttttatacaaaaccgacacctaaattataagtgccggtttttaaaaactggcgcttaaaataaattataggtgtcggttttgtataaaaaaactagcacctatatggagccgagccggccaatccatccgcccgtccttatccatccgccttatccatccatccgaccgagtcgctcagtcgctcacgtctctctctcgctcttgctctctcgcctctctctctctcgcctccctctatccctctctcgCTctctctctctctctcggcggcccggcggtggcccgtcgaggtaggcgtggcggtggctggcaacggcgcgccctcccctccgccggatctggCTggaGgggaggtggtggaccttggggacggccgggcggtggtccggtggaggcggttgcggcggccgcgccctcccctccgccaaatccggccggagaggaggcagcggacctcggcagaggcggcatagcggctgacggcggacctcggcggaggcggcacagcggctggcggcggacctcggcggaggcggctggcggcggccgtgccctcccctccgctagatctggacggaggggaggtggtggacgtcggggacggtcgggcggcggtccagcgaaggcggtggcgccagcggcgcccgatggatttgttggatgattttatagttcttttagatttttttgtgatttgtggatgattttatttctgaatatgtttcatctgtgatctgtgatatgtgatttgtgattcgtgatttgtGggggtttggggatggagtagtgacgatgattgtgagttccggctcgattcgagtcggcttttttttttttttttggctcgtgcaaacttataggtgctggttctattttggtttaggggtaggttgtttttattggtgccgaccaataggtgccggttggaaaactggcacctatagccggttcccaagcggcacctatgatggtattttactagtgtcaggtgtttggaattttcgaagatatcacttagggtctttttttttctgggcatgtggttttgacaagccctatacatatctttgtataattttctcctattatatcaatataggaggcaaaacttttgcccactcttaaaaaaagatattaaagaaagttccaaatgcatgcagatgcgaccggaatgcttttgaattggaacagggaccttactggaaaaggtgactcacacggccggacacctctccattttgctgtatcgatagaaccacccacgaagattccatattaccacatgatattgttctccatcttgcgccacatagacatatacactctttgtttggaccggttcctctatcctaggaaaaccaggggagatagcttgactctgactggtatgttgatggatgctgatgaatcctcagcgtatcagcctgacgacaagggttctttccccatccatgtcgctgcagcagagggtaatgatggcacgatcaacatactgctcaataagagccccaattgtgccaccttgcgcaatgcccagggaagaacatttctgcatattgctgttgagaacggaagatacacaatcataatgtttgttcgcaggagaagaaggctggcagctaaaattatgaatttgcaggacaacgatggaaacaccgccctacacttggctatacaagatggggatctgcatgctgttttatgtctattgatgaacccagtagtaaaagttgattgtctgaacaaggagggtctaacacctctagatatatcaaggaagctgataccagaagggcttcttcatggatcggtaataacaatcccctctccccacccccccccccccacccccgcgcggaaaatgcatgttctttttgcacaaatttggtatgtacttcttgatgctcatgcatgcttgtgcttattacagcatcaacgaatttggataaagaggtcactacgtcttgcgaatgcacatcatgctaacccttcccttgaccatcgtcaagagaagtgcatttgccgaacggtccgtgaggaacgagattctaaaatagttgaaaaagatgacgatgaacaagaagattcaaagacaattacggagtctacacaagttatggccgtctgctccacgctcattgcaactgtggcattcgcagcagcttttacattgcctggaggttatagagcagatgatcacaccaatggcggcacgccgacattcgtcggaagctacggtttcgatgcattcgtcttggccatcacatttgcattcgtctactccttgttggctacatttagcctcgtgtattcaggaatgaccaaagttgactacagcatccgcttggagcaccttaactcggccaatagcttggtctggctatcaatcaggtgcttgctagctgcatttgcattaggTttatacgttgtcctggtaccagttgctcacaagactgccttgcttatctgcctcatgtgttccgttgggttattgcacgggcatacgtcaatgaagacacagatccgcatggccgtgctcttacagggaaggattgggtttaaggtgtggtggattttgggcaggaagatacttcgaaactttctgcactcattttggcccttcctgattatctttggttggccagcttatctgaaatggaggcaccaacagtagttagactcatatatatgaccaccaaatatgtcgtatttgtaccgctgatcaccatagattgtatttcttatagtatcccttttgctattgtgattttgtttctatggtgacaacatactgtattgtgtaccattctgggaaaactattgtatttttgccacatcagttcaaattatgacaattcgagtcc
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| CDS seq | atgacgtcgaacaatggagagaagccgccgcataccgccgcggcggcggcggcggcgacggcaaatgaggccgtgccgtcgtcggctaccaccgagcagcaggaggcgcgtccggatgatgagcgggcgccaaaggatcacaccggctgcgaatgcaagcccaaggtggtaatgctcccggagctactacgagccgccagtcatggcgatctccagaggctgcgcgttcttctaggtgtcctacacgacgatgagtcgccggcaccgacgacgacgaccagccaagacgacgacgctgtcgtcctggaggtttatcgctctttacccctactaccaccaccctctactactgcaggtgaaggtgaagatgaagggacgttgtccctcctggagggaaccacgtttcagggggactccgcgctgcatgtggtggccagcagcggagacgacggcgacttcttgaagagcgcaaggctgatctatggcaaggccaggcacctcctcgaggcgaccaacaacaatggcgatacgcccctccactgcgctgccagagctgggaatgttaagatggtcacgcatctcctcgagctggctggaggcgatggcgccggcgatcaacggaagaagctgatccttaggaaaaaaaaccaccagcatgagacggtgttgcacgaggcagtccgcctcggcaacaaagatctgatcgacaagctgatgacggaagatccagagctagctcgtcatccaagcaacggcgccacttcaccgttgtatctggctgtgatcttgccaaatccacaagttgcgatgcagctgcatgggtatgataaaatgctgtcctactcgggacctgacggacaaaatgtcttgcacgctgctgttcttcgacaaagagatgcgaccggaatgcttttgaattggaacagggaccttactggaaaaggtgactcacacggccggacacctctccattttgctgtatcgatagaaccacccacgaagattccatattaccacatgatattgttctccatcttgcgccacatagacatatacactctttgtttggaccggttcctctatcctaggaaaaccaggggagatagcttgactctgactggtatgttgatggatgctgatgaatcctcagcgtatcagcctgacgacaagggttctttccccatccatgtcgctgcagcagagggtaatgatggcacgatcaacatactgctcaataagagccccaattgtgccaccttgcgcaatgcccagggaagaacatttctgcatattgctgttgagaacggaagatacacaatcataatgtttgttcgcaggagaagaaggctggcagctaaaattatgaatttgcaggacaacgatggaaacaccgccctacacttggctatacaagatggggatctgcatgctgttttatgtctattgatgaacccagtagtaaaagttgattgtctgaacaaggagggtctaacacctctagatatatcaaggaagctgataccagaagggcttcttcatggatcgcatcaacgaatttggataaagaggtcactacgtcttgcgaatgcacatcatgctaacccttcccttgaccatcgtcaagagaagtgcatttgccgaacggtccgtgaggaacgagattctaaaatagttgaaaaagatgacgatgaacaagaagattcaaagacaattacggagtctacacaagttatggccgtctgctccacgctcattgcaactgtggcattcgcagcagcttttacattgcctggaggttatagagcagatgatcacaccaatggcggcacgccgacattcgtcggaagctacggtttcgatgcattcgtcttggccatcacatttgcattcgtctactccttgttggctacatttagcctcgtgtattcaggaatgaccaaagttgactacagcatccgcttggagcaccttaactcggccaatagcttggtctggctatcaatcaggtgcttgctagctgcatttgcattaggTttatacgttgtcctggtaccagttgctcacaagactgccttgcttatctgcctcatgtgttccgttgggttattgcacgggcatacgtcaatgaagacacagatccgcatggccgtgctcttacagggaaggattgggtttaaggtgtggtggattttgggcaggaagatacttcgaaactttctgcactcattttggcccttcctgattatctttggttggccagcttatctgaaatggaggcaccaacagtag
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| Protein seq | MTSNNGEKPPHTAAAAAAATANEAVPSSATTEQQEARPDDERAPKDHTGCECKPKVVMLPELLRAASHGDLQRLRVLLGVLHDDESPAPTTTTSQDDDAVVLEVYRSLPLLPPPSTTAGEGEDEGTLSLLEGTTFQGDSALHVVASSGDDGDFLKSARLIYGKARHLLEATNNNGDTPLHCAARAGNVKMVTHLLELAGGDGAGDQRKKLILRKKNHQHETVLHEAVRLGNKDLIDKLMTEDPELARHPSNGATSPLYLAVILPNPQVAMQLHGYDKMLSYSGPDGQNVLHAAVLRQRDATGMLLNWNRDLTGKGDSHGRTPLHFAVSIEPPTKIPYYHMILFSILRHIDIYTLCLDRFLYPRKTRGDSLTLTGMLMDADESSAYQPDDKGSFPIHVAAAEGNDGTINILLNKSPNCATLRNAQGRTFLHIAVENGRYTIIMFVRRRRRLAAKIMNLQDNDGNTALHLAIQDGDLHAVLCLLMNPVVKVDCLNKEGLTPLDISRKLIPEGLLHGSHQRIWIKRSLRLANAHHANPSLDHRQEKCICRTVREERDSKIVEKDDDEQEDSKTITESTQVMAVCSTLIATVAFAAAFTLPGGYRADDHTNGGTPTFVGSYGFDAFVLAITFAFVYSLLATFSLVYSGMTKVDYSIRLEHLNSANSLVWLSIRCLLAAFALGLYVVLVPVAHKTALLICLMCSVGLLHGHTSMKTQIRMAVLLQGRIGFKVWWILGRKILRNFLHSFWPFLIIFGWPAYLKWRHQQ |
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| Function | Ankyrin repeat-containing protein ITN1 [UniProtKB/Swiss-Prot:Q9C7A2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0006390 | OsLima_09g0006390.01 | Chr09 | 10879643 | 10885037 | + | NAM | ||
| CDS seq | atgacgtcgaacaatggagagaagccgccgcataccgccgcggcggcggcggcggcgacggcaaatgaggccgtgccgtcgtcggctaccaccgagcagcaggaggcgcgtccggatgatgagcgggcgccaaaggatcacaccggctgcgaatgcaagcccaaggtggtaatgctcccggagctactacgagccgccagtcatggcgatctccagaggctgcgcgttcttctaggtgtcctacacgacgatgagtcgccggcaccgacgacgacgaccagccaagacgacgacgctgtcgtcctggaggtttatcgctctttacccctactaccaccaccctctactactgcaggtgaaggtgaagatgaagggacgttgtccctcctggagggaaccacgtttcagggggactccgcgctgcatgtggtggccagcagcggagacgacggcgacttcttgaagagcgcaaggctgatctatggcaaggccaggcacctcctcgaggcgaccaacaacaatggcgatacgcccctccactgcgctgccagagctgggaatgttaagatggtcacgcatctcctcgagctggctggaggcgatggcgccggcgatcaacggaagaagctgatccttaggaaaaaaaaccaccagcatgagacggtgttgcacgaggcagtccgcctcggcaacaaagatctgatcgacaagctgatgacggaagatccagagctagctcgtcatccaagcaacggcgccacttcaccgttgtatctggctgtgatcttgccaaatccacaagttgcgatgcagctgcatgggtatgataaaatgctgtcctactcgggacctgacggacaaaatgtcttgcacgctgctgttcttcgacaaagagatgcgaccggaatgcttttgaattggaacagggaccttactggaaaaggtgactcacacggccggacacctctccattttgctgtatcgatagaaccacccacgaagattccatattaccacatgatattgttctccatcttgcgccacatagacatatacactctttgtttggaccggttcctctatcctaggaaaaccaggggagatagcttgactctgactggtatgttgatggatgctgatgaatcctcagcgtatcagcctgacgacaagggttctttccccatccatgtcgctgcagcagagggtaatgatggcacgatcaacatactgctcaataagagccccaattgtgccaccttgcgcaatgcccagggaagaacatttctgcatattgctgttgagaacggaagatacacaatcataatgtttgttcgcaggagaagaaggctggcagctaaaattatgaatttgcaggacaacgatggaaacaccgccctacacttggctatacaagatggggatctgcatgctgttttatgtctattgatgaacccagtagtaaaagttgattgtctgaacaaggagggtctaacacctctagatatatcaaggaagctgataccagaagggcttcttcatggatcgcatcaacgaatttggataaagaggtcactacgtcttgcgaatgcacatcatgctaacccttcccttgaccatcgtcaagagaagtgcatttgccgaacggtccgtgaggaacgagattctaaaatagttgaaaaagatgacgatgaacaagaagattcaaagacaattacggagtctacacaagttatggccgtctgctccacgctcattgcaactgtggcattcgcagcagcttttacattgcctggaggttatagagcagatgatcacaccaatggcggcacgccgacattcgtcggaagctacggtttcgatgcattcgtcttggccatcacatttgcattcgtctactccttgttggctacatttagcctcgtgtattcaggaatgaccaaagttgactacagcatccgcttggagcaccttaactcggccaatagcttggtctggctatcaatcaggtgcttgctagctgcatttgcattaggTttatacgttgtcctggtaccagttgctcacaagactgccttgcttatctgcctcatgtgttccgttgggttattgcacgggcatacgtcaatgaagacacagatccgcatggccgtgctcttacagggaaggattgggtttaaggtgtggtggattttgggcaggaagatacttcgaaactttctgcactcattttggcccttcctgattatctttggttggccagcttatctgaaatggaggcaccaacagtag
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| Protein seq | MTSNNGEKPPHTAAAAAAATANEAVPSSATTEQQEARPDDERAPKDHTGCECKPKVVMLPELLRAASHGDLQRLRVLLGVLHDDESPAPTTTTSQDDDAVVLEVYRSLPLLPPPSTTAGEGEDEGTLSLLEGTTFQGDSALHVVASSGDDGDFLKSARLIYGKARHLLEATNNNGDTPLHCAARAGNVKMVTHLLELAGGDGAGDQRKKLILRKKNHQHETVLHEAVRLGNKDLIDKLMTEDPELARHPSNGATSPLYLAVILPNPQVAMQLHGYDKMLSYSGPDGQNVLHAAVLRQRDATGMLLNWNRDLTGKGDSHGRTPLHFAVSIEPPTKIPYYHMILFSILRHIDIYTLCLDRFLYPRKTRGDSLTLTGMLMDADESSAYQPDDKGSFPIHVAAAEGNDGTINILLNKSPNCATLRNAQGRTFLHIAVENGRYTIIMFVRRRRRLAAKIMNLQDNDGNTALHLAIQDGDLHAVLCLLMNPVVKVDCLNKEGLTPLDISRKLIPEGLLHGSHQRIWIKRSLRLANAHHANPSLDHRQEKCICRTVREERDSKIVEKDDDEQEDSKTITESTQVMAVCSTLIATVAFAAAFTLPGGYRADDHTNGGTPTFVGSYGFDAFVLAITFAFVYSLLATFSLVYSGMTKVDYSIRLEHLNSANSLVWLSIRCLLAAFALGLYVVLVPVAHKTALLICLMCSVGLLHGHTSMKTQIRMAVLLQGRIGFKVWWILGRKILRNFLHSFWPFLIIFGWPAYLKWRHQQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0337300 | RBH | 0.256360 | 0.882954 | 1.299679 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g16760 | RBH | 0.129419 | 0.230236 | 0.181411 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0337300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0006240 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0006260 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0006470 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0006310 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0006190 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0182500 | RBH | 0.8621835 | 1.103852 | 0.2446465 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0006350 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0158000 | RBH | 0.9564085 | 4.190374 | 0.322035 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0006140 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0006180 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0006240 | RBH | 0.950272 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0006160 | RBH | 0.170946 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0006230 | RBH | 0.290376 | 1.112448 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G006570 | RBH | 0.011180 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0006460 | RBH | 0.042544 | 0.000000 | 0.072732 |
