Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0322300 | OGI:09027940 | 6/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:9385267-9387636 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCTGCCTCTGCGCACCCATCCGCCCCTGACCGCGCATCGGCCCCGCGCCCCGGCGCCCCCTCCACTGCTCCGCCGACCACCGTCAGGTCGCGACGCCGCCGATGACTCTCTCGTGCCGCCAAGGATCACGCCGCCACCGTGACTCCTCGCCATCGATGCGCGACGTGACGCGTTTCCATCTCTTCGTTCGTCGTCGACGTCTTCGCCGGCCTCCTCAAGAATCCCGCACCGCCGCTGTCGACCGAGATGAGGAAAGCCAAGCCATTATCGAAATAGTTGCGCGCGTAGGCACACCAGCAGAAAAAGGCACCGGCCACTCCAAGCTCGTCCGGCACTACGACTCGGAGGCCTCCTGGAACAATGTATCACTATTCACTAGCACCCCTCCTTCCTCACTGCTTTGCTGTTCTTGTTGCTATTTGCTAATGGTCTGCCTCTAGATTCCTGCCTGATGCTTGCTTGTTTGGGCTTTGCAAAGGATTAATGGCTGGACATCGTGCATTGGATCCGGCAGGGGTGCAATTACATCCCAAATAAGATGCTACTTGTTAGCACAATAATTAAATTCTTCATGATGTTACTTTAAGATCGATGTAGCCACCTGTAGCAAATGTTGAGTGCATGATCAAAAAATTGAAGTTTACTGTTGTTTACTTGTGAATTGGGATTTGCTTGCATCAGTCTACAAAATCTTCCCTATTGCTTAGTTCAAAACTAGGCGGTGTGGATTTTGGTTAATTTTGACATATGCAGGATCTTAGCTCGATGATACGTGCGCATCTGCTGTTTAAGATGCACTTGGCTCTGTTCAGGGATGATTAACTGTGCATTCTTTAGTTACTGATTAGTAAGCTTTACAGTATAATAACTTAGCGGCTGAAATCGTAAATGTTAGTACTGCATTTCCTTTACTTGGATGTAAGGATTCATGCAATCATGTGGTCTCACTTGTGTTGAGGTTTTAGCAAATATAATTCAGATTGGCCTGGTTGGCAGAGCTGAGCATATGCGTGAGTTTTGAATCTTTTAGTAGTTGAATACTGCTTTGATATGTCTGTAGCACCCCAAATATGTTATGCAGAATTATTGGTACTTATTTGTGTTTATTGCACCGTCATTCATTTCTGTAGCTATTGCCTCATGATGAAGCAATATTTGGATATGTCATCGAAGCCAGGGAGACCAAGAGCAGTAGTCATCTGCTCCACAAGGTAGCTGACTGATCAGGTCAGGTTATCCTTACTACCAAAAAAACATGAGTTTATGATCGGATTTTTTTAAATGATACTGCTGAATGTGATTTCGTGCAATGGGATGAGGCGTATATATGCCTGTCTAATTGTATTGCTTTGAATAGAATTGGTTTTTAGATAAACCTAATATGTTTATTTTTAGACAACAACATGGATTCATGCTGGATTTTAGTATGAAAACCTTTGGTCCATGCTGGAGTTTAGACTAAAAAACTCTCCTCTCTCAATATTCAAATAATGTGTTACAAAAGATCCCATGGTGGTGGTAGAGACTAACCACCACTTAATACTGTTTTTTATTTTTGTTTATTTAGATACAACATGGACAAAGTTCATAAAATTACATTAGTAATCATCATCAAATTCATGCTTTTCATTCAGGCTGAAGAGATGGGTAGGTTTTTCGGAAACACAATTATATCCAGGTATTATTCAGTTTCTTGTTGCTTCTTATATCATGTAAAGAGCTTATTTATCTACCTCGGATGTTCATTCCAAGAGACAGCATAAATTACTCCGGAGATCCCAAAACTTGAGCTGTGGTGTCTTAAGTTAGCAACTAACATATCTGTAATATTTATGTTTCTCAAAGATGTGCCCTTATCAGTAAATTGTGAAGGAGGGTTGGAGAGGCCTTCAAGTGAATTTTTTGTTGTTGTTTTCTTGACATAGAAATGCAATAAAGAAGATTGGATTATTTTAGGCAATGATTGGCAAGGATAAGTAATTTTACTGATATTAGATTTCAGCTGCAGAGTCCCTTCAATTTAGAATAAATTTGACATGTAATTAAGCCTTAGTCTTGGTTTTCTTGTTTAAATTTATTCCTGGTACTCAAGATTTTTTTTTCTTACTAATATCTTGTTCTAATTGTAGGTGAAGGAGCTGGTTTGCTTCACCTTCATAGCACCTATAGACAGGATTCTAATTGTAGGTGATAAATGGTGTTTATTGCCTTCTTGCATAGTTCAAAATGTGCTTGATCGTATTGTGTCCAGGATGGTTCAAAAGCATCATAGCTAGGCGCACTGAATTTGTGACTATGCCCAGACTACTGGGAATGTTCTTACCAACGGGGAAAATTGGTATATTCAAGCCTAGCATGCTCATTTTGGAT
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| CDS seq | ATGACTCTCTCGTGCCGCCAAGGATCACGCCGCCACCGTGACTCCTCGCCATCGATGCGCGACGTGACGCGTTTCCATCTCTTCGTTCGTCGTCGACGTCTTCGCCGGCCTCCTCAAGAATCCCGCACCGCCGCTGTCGACCGAGATGAGGAAAGCCAAGCCATTATCGAAATAGTTGCGCGCGTAGGCACACCAGCAGAAAAAGGCACCGGCCACTCCAAGCTCGTCCGGCACTACGACTCGGAGGCCTCCTGGAACAATCTATTGCCTCATGATGAAGCAATATTTGGATATGTCATCGAAGCCAGGGAGACCAAGAGCAGTAGTCATCTGCTCCACAAGGTAGCTGACTGA |
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| Protein seq | MTLSCRQGSRRHRDSSPSMRDVTRFHLFVRRRRLRRPPQESRTAAVDRDEESQAIIEIVARVGTPAEKGTGHSKLVRHYDSEASWNNLLPHDEAIFGYVIEARETKSSSHLLHKVAD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0322300 | OsNip_09t0322300-01 | Chr09 | 9385267 | 9387224 | + | RAP2018-11-26 | ||
| CDS seq | ATGACTCTCTCGTGCCGCCAAGGATCACGCCGCCACCGTGACTCCTCGCCATCGATGCGCGACGTGACGCGTTTCCATCTCTTCGTTCGTCGTCGACGTCTTCGCCGGCCTCCTCAAGAATCCCGCACCGCCGCTGTCGACCGAGATGAGGAAAGCCAAGCCATTATCGAAATAGTTGCGCGCGTAGGCACACCAGCAGAAAAAGGCACCGGCCACTCCAAGCTCGTCCGGCACTACGACTCGGAGGCCTCCTGGAACAATGTATCACTATTCACTAGCACCCCTCCTTCCTCACTGCTTTGCTGTTCTTGTTGCTATTTGCTAATGGTCTGCCTCTAG
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| Protein seq | MTLSCRQGSRRHRDSSPSMRDVTRFHLFVRRRRLRRPPQESRTAAVDRDEESQAIIEIVARVGTPAEKGTGHSKLVRHYDSEASWNNVSLFTSTPPSSLLCCSCCYLLMVCL |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0322300 | OsNip_09t0322300-02 | Chr09 | 9385278 | 9387636 | + | RAP2018-11-26 | ||
| CDS seq | ATGACTCTCTCGTGCCGCCAAGGATCACGCCGCCACCGTGACTCCTCGCCATCGATGCGCGACGTGACGCGTTTCCATCTCTTCGTTCGTCGTCGACGTCTTCGCCGGCCTCCTCAAGAATCCCGCACCGCCGCTGTCGACCGAGATGAGGAAAGCCAAGCCATTATCGAAATAGTTGCGCGCGTAGGCACACCAGCAGAAAAAGGCACCGGCCACTCCAAGCTCGTCCGGCACTACGACTCGGAGGCCTCCTGGAACAATCTATTGCCTCATGATGAAGCAATATTTGGATATGTCATCGAAGCCAGGGAGACCAAGAGCAGTAGTCATCTGCTCCACAAGGTAGCTGACTGA
More
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| Protein seq | MTLSCRQGSRRHRDSSPSMRDVTRFHLFVRRRRLRRPPQESRTAAVDRDEESQAIIEIVARVGTPAEKGTGHSKLVRHYDSEASWNNLLPHDEAIFGYVIEARETKSSSHLLHKVAD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.268561 | 0.0 | 0.300722 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0369800 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g15350 | RBH | 0.181487 | 0.0 | 0.077333 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0322300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0014510 | SBH | 0.0 | 0.0 | 0.432796 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0005490 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0014360 | SBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0005510 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0014530 | SBH | 0.0 | 0.000000 | 2.256883 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0050190 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G005740 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0005630 | RBH | 0.0 | 0.0 | 0.0 |
