Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_05g0369800 OGI:05047980 | 16/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr05:17776218-17778528
Gene Symbol -
DNA seq

ATCCAAAATGAGCATGCTAGGCTTGAATATACCAATTTTCCCCGTTGGTAAGAACATTCCCAGTAGTCTGGGCATAGTCACAAATTCAGTGCGCCTAGCTATGATGCTTTTGAACCATCCTGGACACAATACGATCAAGCACATTTTGAACTATGCAAGAAGGCAATAAACACCATTTATCACCTACAATTAGAATCCTGTCTATAGGTGCTATGAAGGTGAAGCAAACCAGCTCCTTCACCTACAATTAGAACAAGATATTAGTAAGAAAGAAAAATCTTGAGTACCAGGAATAAATTTAAACAAGAAAACCAAGACTAAGGCTTAATTACATGTCAAATTTATTCTAAATTGAAGGGACTCTGCAGCTGAAATCTAATATCAGTAAAATTACTTATCCTTGCCAATCATTGCCTAAAATAATCCAATCTTCTTTATTGCATTTCTATGTCAAGAAAACAACAACAAAAAAATCACTTGAAGGCATCTCCAACCCTCCTTCACAATTTACTGATAAGGGCACATCTTTGAGAAACATAAATATTACAGATATGTTAGTTGCTAACTTAAGACACCACAGCTCAAGTTTTGGGATCTCCGGAGTAATTTATGCTGTCTCTTGGAATGAACATCCGAGGTAGATAAATAAGCTCTTTACATGATATAAGAAGCAACAAGAAACTGAATAATACCTGGATATAATTGTGTTTCCGAAAAACCTACCCATCTCTTCAGCCTGAATGAAAAGCATGAATTTGATGATGATTACTAATGTAATTTTATGAACTTTGTCCATGTTGTATCTAAATAAACAAAAATAAAAAACAGTATTAAGTGGTGGTTAGTCTCTACCACCACCATGGGATCTTTTGTAACACATTATTTGAATATTGAGAGAGGAGAGTTTTTTAGTCTAAACTCCAGCATAGACCAAAGGTTTTCATACTAAAATCCAGCATGAATCCATGTTGTTGTCTAAAAATAAACATATTAGGTTTATCTAAAAACCAATTCTATTCAAAGCAATACAATTAGACAGGCATATATACGCCTCATCCCATTGCACGAAATCACATTCAGCAGTATCATTTAAAAAAATCCGATCATAAACTCATGTTTTTTTGGTAGTAAGGATAACCTGACCTGATCAGTCAGCTACCTTGTGGAGCAGATGACTACTGCTCTTGGTCTCCCTGGCTTCGATGACATATCCAAATATTGCTTCATCATGAGGCAATAGCTACAGAAATGAATGACGGTGCAATAAACACAAATAAGTACCAATAATTCTGCATAACATATTTGGGGTGCTACAGACATATCAAAGCAGTATTCAACTACTGACAGATTCAAAACTCACGCATATGCTCAGCTCTGCCAATCAGGGCAATCTGAATTATATTTGCTAAAACCTCAACACAAGTGAGACCACATGATTGCATGAATCCTTACATCCAAGTAAAGGAAATGCAGTACTAACATTTACGATTTCAGCCGCTAAGTTATTATACTGTAAAGCTTACTAATCAGTAACTAAAGAATGCACAGTTAATCATCCCTGAACAGAGCCAAGTGCATCTTAAACAGCAGATGCGCACGTATCATCGAGCTAAGATCCTGCATATGTCAAAATTAACCAAAATCCACACCGCCTAGTTTCGAACTAAGCAATAGGGAAGATTTTGTAGACTGATGCAAGCAAATCCCAATTCACAAGTAAATAACAGTAAACTTCAATTTTTTGATCATGCACTCAACATTTGCTACAGGTGGCTACATCGATCTTAAAGTAACATCATGAAGAATTTAATTATTGTGCTAACAAGTAGCATCTTATTTGGGATGTAATTGCACTCCTGCCGGATCCAATGCACGACGTCCAGCCATTAATCCTTTGCAAAGCCCAAACAAGCAAGCATCAGGCAGGAATCTAGAGGCAGACCATTAGCAACAAGAACAGCAAAGCAGTGAGGAAGGAGGGGTGCTAGTGAATAGTGATACATTGTTCCAGGAGGCCTCCGAGTCGTAGTGCCGGACGAGCTTGGAGTGGCCGGTGCCTTTTTCTGCTGGTGTGCCTACGCGCGCAACTATTTCGATAATGGCTTGGCCTTCCTCATCTCGGTCGACAGCGGCGGTGCGGGATTCTTGAGGAGGCCGGCGAAGACGTCGACGACGAACGAAGAGATGGAAACGCGTCACGTCGCGCATCGATGGCGAGGAGTCACGGTGGCGGCGTGATCCTTGGCGGCACGAGAGAGTCATCGGCGGCGTCGCGACCTGACGGTGGTCGGCGGAGCAGTGGAGGGGGCGC

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CDS seq

ATGACTCTCTCGTGCCGCCAAGGATCACGCCGCCACCGTGACTCCTCGCCATCGATGCGCGACGTGACGCGTTTCCATCTCTTCGTTCGTCGTCGACGTCTTCGCCGGCCTCCTCAAGAATCCCGCACCGCCGCTGTCGACCGAGATGAGGAAGGCCAAGCCATTATCGAAATAGTTGCGCGCGTAGGCACACCAGCAGAAAAAGGCACCGGCCACTCCAAGCTCGTCCGGCACTACGACTCGGAGGCCTCCTGGAACAATCTATTGCCTCATGATGAAGCAATATTTGGATATGTCATCGAAGCCAGGGAGACCAAGAGCAGTAGTCATCTGCTCCACAAGGTAGCTGACTGA

Protein seq

MTLSCRQGSRRHRDSSPSMRDVTRFHLFVRRRRLRRPPQESRTAAVDRDEEGQAIIEIVARVGTPAEKGTGHSKLVRHYDSEASWNNLLPHDEAIFGYVIEARETKSSSHLLHKVAD

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_05g0369800 OsNip_05t0369800-00 Chr05 17776218 17778528 - RAP2018-11-26
CDS seq

ATGACTCTCTCGTGCCGCCAAGGATCACGCCGCCACCGTGACTCCTCGCCATCGATGCGCGACGTGACGCGTTTCCATCTCTTCGTTCGTCGTCGACGTCTTCGCCGGCCTCCTCAAGAATCCCGCACCGCCGCTGTCGACCGAGATGAGGAAGGCCAAGCCATTATCGAAATAGTTGCGCGCGTAGGCACACCAGCAGAAAAAGGCACCGGCCACTCCAAGCTCGTCCGGCACTACGACTCGGAGGCCTCCTGGAACAATCTATTGCCTCATGATGAAGCAATATTTGGATATGTCATCGAAGCCAGGGAGACCAAGAGCAGTAGTCATCTGCTCCACAAGGTAGCTGACTGA

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Protein seq

MTLSCRQGSRRHRDSSPSMRDVTRFHLFVRRRRLRRPPQESRTAAVDRDEEGQAIIEIVARVGTPAEKGTGHSKLVRHYDSEASWNNLLPHDEAIFGYVIEARETKSSSHLLHKVAD

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.000000 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_09g0322300 RBH 0.268561 0.0 0.300722
Nipponbare | IRGSP 1.0 | MSU LOC_Os05g30695 RBH 0.000000 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os05g0369800 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_05g0014510 RBH 0.0 0.0 0.432796
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_05g0014520 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_05g0014360 RBH 0.0 0.000000 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_05g0014380 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_05g0014530 RBH 0.0 0.000000 2.256883
Minghui 63 | MH63RS3 | HZAU NA NA NA NA NA
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_05g0014100 RBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_05G0282700 RBH 0 0 0.0388345
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_05g0014270 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_05g0014300 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_05g0014320 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_05g0014390 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_05g0014410 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_05G014090 RBH 0.000000 0.0 0.000000
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_05g0014340 RBH 0.0 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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