Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0314900 | OGI:09026250 | 6/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:8636381-8639457 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTTCTCCCCAAAGAAGCACAAGAAGAGGAAGAGCTTGGCGACGATGGCGAGCGGCAGCATCGTGAAGAAGGAGGTCGGCGAGAACCACGACGTGCTCCGCTTCGGCTTCAACAACAGCGTCAAGGGCGACCTCGCGCCGCAGCACCCGATCCAGGCCACCGTCCACAAGGTACCCGTCGCTGCTTCCCCTCTCCTCGCCCCCTCGAAAACCCTAACGCGCTGAATCCGGGTGATTGGTGGTGGGGCTTGCCCGCGCGCAGGAGGCCAAGTTCTGGGCGGATAAGAAGAGGTTCGGGGCGGAAGCCATCTACGGATCCGCTTTCAACATCCGCAAGGATCTCGATGCCCAAATCCTCTCCAAGTAATTTCACTATCCTATCCCCCCATATGATTTCGCTGGGAAAACGATTTGTTCGAGTAAATAATCACTTGCGGTTCATGTTAACATTAGATAACTGTGTCGGTATTACATAGCATATATTGGAATTGTTAGGGTCAATGACAATTTTGGGTGGAATTCCTCAAACTCAAATGGCCTTATTGTGGGACGAGATATGTTTCTTTGAATTTGATGATGGCATGTATTCCCCCTGTGTTTGTCTGTTAGATAACCCTCGCAGTACATAAAAAAAAACCTCGCATTTACATAATTTTCTGTAGGCTTCAATTAAAAAATAAACTCAAGGTCTCGAAGGATCAAATTAAATATGTACAAATGAAAAACCCCAAACAACCAGATGTTGCGTAATCATTAGCATGCAAATCAAACAGGAAATTAGGGGATTTCGTGGGTTAGGGAAAATAATCTCACCCGATCGCTCGCTGGCTCATTGTTGCTTCTCATGAGACACCAGCCATCGCACTTGCTGTGTTTGTGCGTCTACCCGAGGACAGTACAAGGCAAAGAGACAAACCAACAAACAAGTTAGTTTCAGGTTGCGATAACAGGCATGTTAGCTGCTGTTGTGTCGGGTACTCGGATGTTGTTTATGGGTTGAGCAAGAGAGCAAATAATGGACCAATTATGTCTGAGTATTGGTGTCAAAAGACAAGGTTCTCTGGTGTCACCCATGAGAGAATAGAATAGAGCACTTGGAACAGGCCAAAGCCATTGGTATCATGTGACACCACTGCTATAACGTTGGATCCACCCCTATTTTGTGTGTCTAGTTGTAAATCCGTTAGCTCTTTGCATTTACTGCAACTATTTTGCTCTTATTGTCGTATGCATCAAGTGTCAGTGATGTTATGTTTTGTGGTCATCAGCGGTATTCTGCTAACTGTTACTCCCTCCATTCTAAAATATAAGTCACAACCACCTTTAACCTAAAGACCAAAAAACAATAATCACCTCATTGTTTGAATCATCATAATAAATACTAATGCATGCACCCTATAGAATTAGAGATCTTGAGGGTGAAGGATTTAAGAAATAATAATTTAGTGGAGAGGAGGTGCTAGTTAACAGCCTCATCTTTTGGCTTATGCTTATGTTTATAAGCCAAAAATTGAATTTTCAACCTTAAATTTGGAATTGATTTTGGGGTTTTTTCATCATAGTTTATTTTCCAGCCTTTGTCTTTTAGATCGCTAAAAACACGGATATAAAAAATTTATTTGCAAATTATTTTCTGTTTACAAATATGCCGTTTCACTTATTCTGTCAATAAGCGAAACGATGGGGGTCCTAATTTCAATGCATGCATGCACACCTTGTATTATGAAACGTGAAAAAAAGTAGTTGTGCCGTATATTTTGGAATGGAGGTAGTAGTTTGCAAGTTATTTCTGAAATTTGTTCTCGTGGCTATGTGCAGTATTTTGAGCACTGTTTTTAAGGTGTTTAATTAGGTCCTGTTTCTTCAAGAGCATTTCCACAAATCAAATATTAGGACTGCTAAGAATGTATTAATGCTTTGAGTATGCTAACATGGATGGAATGTCTGGATTCCTTGGTCTGGTGAATACACAATCATATCTTGAGGTTGCTCTTGTTTGTCTCTCCGTCTCTCCGATGTAGTAACAACTAACAACTAGCACATCAGCGCAACTGTGCAAATAAGGGAAAAACAGCGTGCGCAACTCATGCCCAGGCTAACATTAAAGATGTTTTGGTTGATGATTTATCTGTTTGCAGGTTCCAAAGGCCCCCTGGTGCATTGCCATCATCTATGCTAGGATACGAGGCGCTGACTGGTTCCTTGGATGATTTCGGGTTTGAAGATTATCTCAACTGTAAGGCTTGTTGTCCTTTGATTTCCTATGAATCTTCTTGCTGGCCTTTCACATTTACGTGCAACTATTTGCTCACCAACTTTTGCTGATTTATTAGCTGCATGTTTGATGCTTATGTTCTTCATTGGAATTATGGAATCCAGTGCTATCAAGTTCTCATTACCTTTATATTAATTCTAGTTTTTTTATTTTAGTAGACCAAAACCATGTAGTCTTATGATTCCTTGGGAGTTTAGAAGTTCTTGGGAAACCAAGGGTCATGAAATGATACTTGTTTTTCATTTTTCATACTTCTAGTCGGTACATCTTGATAAAATTTTGCTATTAGGATATACTTGGAGGAATGTATAATAATTATCACAAAGTGGTTATTTTATTCTGTCCTCATGATATGATATATTAACAGCAAAGTACATATTTTGCTTTGTCATCCAAGCTTGGTTGGCCTTACTTTGCATGGCAAAACATACATCTCATCACCATTTTCAGTGATGAGATGTATCACCAGAAATACAGCCTCTATAGACTATATATATTTCAGTCCCACTTCTGCCCTGGGAACATTTTTTTTTTCTTATTTACACTCGCTGAGTGTTCTTCCTGTTGTTGGAAATGTTACTTAGCCTTGTGTTAATTTTCTTTTTACTTTGGATCATGTTGCAGTGCCCCAAGATTCTGACAGCTTCCATGCTCCAGACATGCACCACGGAATGGAGGTTCTCCTTGGTTTGTCAAAGGGACCGATTTGCCCTAGTTTCAATTGATTTCACAAAATGTATTTCTCGTCTTGCACTGTTCTCCTCATTCAATATCTATGTCGCTCTTTAGACTGAGATTTCGATG
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| CDS seq | ATGGCGAGCGGCAGCATCGTGAAGAAGGAGGTCGGCGAGAACCACGACGTGCTCCGCTTCGGCTTCAACAACAGCGTCAAGGGCGACCTCGCGCCGCAGCACCCGATCCAGGCCACCGTCCACAAGGAGGCCAAGTTCTGGGCGGATAAGAAGAGGTTCGGGGCGGAAGCCATCTACGGATCCGCTTTCAACATCCGCAAGGATCTCGATGCCCAAATCCTCTCCAAGTTCCAAAGGCCCCCTGGTGCATTGCCATCATCTATGCTAGGATACGAGGCGCTGACTGGTTCCTTGGATGATTTCGGGTTTGAAGATTATCTCAACTTGCCCCAAGATTCTGACAGCTTCCATGCTCCAGACATGCACCACGGAATGGAGGTTCTCCTTGGTTTGTCAAAGGGACCGATTTGCCCTAGTTTCAATTGA
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| Protein seq | MASGSIVKKEVGENHDVLRFGFNNSVKGDLAPQHPIQATVHKEAKFWADKKRFGAEAIYGSAFNIRKDLDAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLNLPQDSDSFHAPDMHHGMEVLLGLSKGPICPSFN |
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| Function | Cyclin-B1-2 [UniProtKB/Swiss-Prot:Q0DWQ7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0314900 | OsNip_09t0314900-00 | Chr09 | 8636381 | 8639457 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGAGCGGCAGCATCGTGAAGAAGGAGGTCGGCGAGAACCACGACGTGCTCCGCTTCGGCTTCAACAACAGCGTCAAGGGCGACCTCGCGCCGCAGCACCCGATCCAGGCCACCGTCCACAAGGAGGCCAAGTTCTGGGCGGATAAGAAGAGGTTCGGGGCGGAAGCCATCTACGGATCCGCTTTCAACATCCGCAAGGATCTCGATGCCCAAATCCTCTCCAAGTTCCAAAGGCCCCCTGGTGCATTGCCATCATCTATGCTAGGATACGAGGCGCTGACTGGTTCCTTGGATGATTTCGGGTTTGAAGATTATCTCAACTTGCCCCAAGATTCTGACAGCTTCCATGCTCCAGACATGCACCACGGAATGGAGGTTCTCCTTGGTTTGTCAAAGGGACCGATTTGCCCTAGTTTCAATTGA
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| Protein seq | MASGSIVKKEVGENHDVLRFGFNNSVKGDLAPQHPIQATVHKEAKFWADKKRFGAEAIYGSAFNIRKDLDAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLNLPQDSDSFHAPDMHHGMEVLLGLSKGPICPSFN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0583700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g14590 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0314900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0037260 | SBH | 2.519331 | 93.262131 | 19.361649 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0037360 | SBH | 0.629592 | 13.880534 | 8.402159 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0037180 | SBH | 6.109054 | 50.564671 | 22.926380 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0005230 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0005440 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0153200 | RBH | 0.0185795 | 0.066647 | 0.0719055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0005600 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0373500 | SBH | 0 | 0 | 0.0216475 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0037020 | SBH | 0.816217 | 1.303923 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0036860 | SBH | 2.897151 | 48.169262 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0037090 | SBH | 2.903602 | 40.377811 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0037090 | SBH | 3.605858 | 6.939103 | 4.809688 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0024090 | SBH | 0.296327 | 11.665488 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G037270 | SBH | 2.067698 | 14.895859 | 11.113806 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0005370 | RBH | 0.0 | 0.0 | 0.0 |
