Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0037020 | OGI:02096170 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:36096216-36098581 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aacatcgtaaagagaaggattggctatatatgtagaaccaatgcataatagacatctcattatgtacacgctccaactggccagattcccagatgtccatgcagggagcaaatcattttcttaagtgcattcgaccacagcaaccagcaaaccggacataagttcaaacatgataacattaaattcgattttagaactcctcaaacggatgcaatacctatagttcttacatgtcacggtcacggtcacggtctaaagaccgatatagatactgaacgaggagcgcagtgtaagacaagaaatacatttttgagaaatcaattgaaactagggcaaacaggtccctttgacaaaccgaggcgaacctccattccgtggtgcatgtcgggagcacggaagctttcagaatcttggggcactgcaacgtgatcaatggaaaaggaagattaacacaacgataagcaacaataggacgagtaaatactagtacttgacaagaaaaaagttgtcgcaagggcggtggaactgaaatatagtctatataggctgtattttgtggtgattagtataaatcagcattaatgaatggtgatgagatgtaagttctgcatggaaagtaaagccaaaccaagctcaaagcaccgacagaagcaaaatatataatttgtggatatcatgatgacggaataaaacaaccaatttgagataattattattatttcaagtactccctccagccaaatttatttggcattgtttctaacgccgaataaatttgactagagtctagaggtagtacatcctaacaccaaaaatctatcaagatgaccctttgttttccaagaacttctaaactaccaataccaagatgccacaagactacatagttttatgttcgagaaaaacgactacacaattttgccctgttaaaagtaaacaaacaagaattcatatgaaggtaaatagaactttggtggcactccctgactccaataaagaacataaacatgaatataataaataagcaaaagttggttcccaaatagttgcaaagaaatgtgaaaagcaagcaataagattcaggggaaatcaaaggacagcaatccttacagttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatcctagcatagatgacggcaatgcaccagggggcctttggaacctggcaacagataaatcatcaatcaaaacatctttcatgttagcctgcccaattaaaagcaatggagatgagttgtgcgtgctgtttttctcctatttgcagtgtattgatgtgctaattgttactagaaggggcagacaaacaaaaacaacatcaagatactgcgaattcaaccagaccaagggattcaagcattctgagtgatccatactagaacatacaaagcatcaacaaaatcttagtaacctgagcatattgatatgtggagatgctcaaaatactacacatgcacaatattttgagaatcaactattctaaccaggaaaattggcgtatataacaagaagtttcagaaggaatttgcacactgtcagcagaatacaactgatgaccaccaacataacatcactgatataatatgcacataggaaaagagttgcagacttgcagtaaatgcaaagagctactaccagatttacaactagacacacacacacacacacacacacacacacacacacacacaaaaagctaactgcaagggcaatcttaacaaacacagggaggatataaaccacatcgaattcaaatatgcatatctcgtgcccataataagccagcccacttaagtttacggaggtgaaattcctctaacagttccaacaagacatgtaatactgcctgctcagatcagatggaactactagtgcctatctatcaacttggacagatggtggtattgcagcggaaattacatggggataggacagtgaattacttggagaggatttgggcatcaagatccttgcggatgttgaaggcggatccgtagatggcttccgcgccgaacctcttcttgtccgcccagaacttggcatcctgcgcgcgcggcggggattcagcgtgttagctagggtttcgagggcgagaggggggagaagaagaagaagaagaagaagaccttgtggacgctggcctggagcgggtgcggcggcgcgaggtcccccttgacgctgtcgttgacgccgaagcggaggacgtcgtggttcccgccgatctccttcttcaccacgccgccgctcgccatcgtcgcctgcgaagctttctctctctctctctctcgcttctttctttggggagaagaaagggagacggatc
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| CDS seq | atggcgagcggcggcgtggtgaagaaggagatcggcgggaaccacgacgtcctccgcttcggcgtcaacgacagcgtcaagggggacctcgcgccgccgcacccgctccaggccagcgtccacaaggatgccaagttctgggcggacaagaagaggttcggcgcggaagccatctacggatccgccttcaacatccgcaaggatcttgatgcccaaatcctctccaagttccaaaggccccctggtgcattgccgtcatctatgctaggatatgaggcactgactggttccttagatgattttgggtttgaagattatcttaacttgccccaagattctgaaagcttccgtgctcccgacatgcaccacggaatggaggttcgcctcggtttgtcaaagggacctgtttgccctagtttcaattga
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| Protein seq | MASGGVVKKEIGGNHDVLRFGVNDSVKGDLAPPHPLQASVHKDAKFWADKKRFGAEAIYGSAFNIRKDLDAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLNLPQDSESFRAPDMHHGMEVRLGLSKGPVCPSFN |
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| Function | Cyclin-B1-2 [UniProtKB/Swiss-Prot:Q0DWQ7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0037020 | OsLima_02g0037020.01 | Chr02 | 36096216 | 36098581 | - | NAM | ||
| CDS seq | atggcgagcggcggcgtggtgaagaaggagatcggcgggaaccacgacgtcctccgcttcggcgtcaacgacagcgtcaagggggacctcgcgccgccgcacccgctccaggccagcgtccacaaggatgccaagttctgggcggacaagaagaggttcggcgcggaagccatctacggatccgccttcaacatccgcaaggatcttgatgcccaaatcctctccaagttccaaaggccccctggtgcattgccgtcatctatgctaggatatgaggcactgactggttccttagatgattttgggtttgaagattatcttaacttgccccaagattctgaaagcttccgtgctcccgacatgcaccacggaatggaggttcgcctcggtttgtcaaagggacctgtttgccctagtttcaattga
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| Protein seq | MASGGVVKKEIGGNHDVLRFGVNDSVKGDLAPPHPLQASVHKDAKFWADKKRFGAEAIYGSAFNIRKDLDAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLNLPQDSESFRAPDMHHGMEVRLGLSKGPVCPSFN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.816217 | 1.303923 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0800100 | RBH | 4.529041 | 5.318562 | 31.377636 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g55640 | RBH | 2.930757 | 3.455950 | 7.744719 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0800100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0037260 | RBH | 2.519331 | 93.262131 | 19.361649 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0037360 | RBH | 0.629592 | 13.880534 | 8.402159 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0037180 | RBH | 6.109054 | 50.564671 | 22.926380 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0036810 | RBH | 0.650075 | 2.595280 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0037000 | RBH | 12.450877 | 127.239487 | 49.654152 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0558400 | RBH | 22.6976015 | 28.2038105 | 43.192316 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0036790 | RBH | 0.625067 | 7.993972 | 4.020517 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0588700 | RBH | 66.4122735 | 52.704241 | 129.7355385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0037090 | RBH | 0.442721 | 0.540015 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0036860 | RBH | 2.897151 | 48.169262 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0037090 | RBH | 2.903602 | 40.377811 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0037090 | RBH | 3.605858 | 6.939103 | 4.809688 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0036690 | RBH | 1.490299 | 21.673923 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G037270 | RBH | 2.067698 | 14.895859 | 11.113806 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0037060 | RBH | 4.935065 | 70.260208 | 50.858883 |
