Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0287500 | OGI:09020170 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:6439640-6441905 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAGACAAGTAGCTAATTAAATAGTGTGCCTGGTGTGGACATAGCCAACTACAGAGTCATCTTACAACAGGCTTCATTATTTGTCTATAGGAACAGATGGGCATCAAACTAGAGTATAATATATCTACATGAATTTCATACAAAACAAGACTACATCATATGTACATTTTATAGCCGAAGTAAAGTTCACAGCATATCTATCTGCATACAACACCACAGGAGCAGCTTCGACCCTTGGAGTTCACTCGTTGTATCATTGTCAGCTGAATAAATCTTGTAAGTACATATAAGAAGGTGATTTGGAAACTCAGCTTCCCACTTTGAACGCGTCCACAAAAAAGCCCAGACATACGCCGGCTTTCCAGTAGTTCACCATTGTGATCATTGACCAAAATCGTCCAGGAGGCCTACTGGCCGGTTTTCTGTACATGAGCATGCCAATTCCCTCAATGGTAGCCACTACAATAGCAGCAACAAAAACATCCCAGTCACCAGTCTGCCCCAGGACTGTTGCCAATGCATTGGCGGTATAGAAGCCAAGGAGCACAAGGAAAATCTTTGTGGGGGATTTGTTCCTGGCAGAATTCAGTTTTTCAAGTAGTTCCCTCGCAGCAGCCTGGATGAGTCTTCCCAGCCTTGTTCTGCCAAGAAAGCCACCATCATCTTCGAAATCTTGGTTGTCAGCGTTAGATGGTCCACCTGTTTCCAAGGCAAAGACTGGCTTCCATCTGGTTCTTTTCATCTGGCAACTACAGAGTGGAGATATTGAGTCAAAAGTGCCAAAGCTTCTACAGGGTAGAGATTTTAAGAAGTTGATTGCGCAGCGCCAATCATGTTTTTTTTCCCAATTTGTACAAGGCTTCAGTTTTGAAGCTAGCAATTCGTCTACTCCCATCCCCCAGAGAATATGAAACTTCGAATTTGACTAGTTAAACATTCCGAACTTTTATTTTGTGGGGAAACATTCTGAACTTTGACCACTACAACATAGAGAACTATCTTACATTTCTCATGTCAAAATAATACAATTAAGTGACTAAAAAATGTTTTGGTAACACAATGTATTACAGTTATTTTGACGGTCAAATTTACACACTAGCGATCTTATCATGTCCAAAGTGTCATATATTTGTTGACAGATGGATTAGTTCTATTGTTTTATTTTGTTTATTCAAAATGGTATAAGCATACAACGCGGTAGATACCATATAAACTAAAAATGGGTACTATCAGTAATAAGATCTAATGTATACCACAAATTGATATTATATAACGATTACGTGCCGAATTCTTATATTTTGTATGGAACCTAGTGGCATAATCACAATACTGTTTGAAGAAGGTAAATGCAATACTTTGTCGAAAGTCTGCATCCATGTCACCTTCAAGAGCACAACCTGCAGGCGTGCATTTCCTAACAACATGCAGTGCAACGCAATTCCCTTTATTCCATCCTTTTTGTTTGGGTGAGCCCATATTATATTCATTTTAAACAGTCAAACCCCCAACTTACATCAGCCCAGTGCCTAGCTTTACATTAACCTATATGCTTCTTAACTTCAATATAATCTGAACAGACAATATAATCGGACTAACAGTCAGCAAAAAATGTGCTAAATCCATGAACATCCCGACTATGGACATGGTTCAGGTAGCACGAACTCATCATAAACATAAACAACCAGATATACTAAAAGTGCCACGGAACTGTCGCAGCACACACCCCCAACTAGAAATATGTGCGCAAATGAATTGGAGAAGGTAAAACTGCTGCTCCCCCAAAATTCCCCCAATCCATACGGGCTCGAAAGAAACTGGTACAAGGTACATATTCAAAAGTGACAGTAAAAATTGACGCCCAGCCTCCCAATAGCTCCGACAATTTAGTTCTGAATTAGTCTTAACCCCAAGTATCCCAATTTCTGATGCCCCTAGTACTGAACTTAGTCTAATTGGAACCCAATTGCCAATTGGTGTTTCTTTTTTTTTTTTTATAACAAAATTCAAGTAACGGATAGAAGACAACAATGAGCAGAGCTAACCTGAGGCCCAAGGCTCGGCCAGTTGTTCCCGGCGGCGACAAGCAGGTCGGGTGGAGAAGCGCGGCACCACGGCCGCCGCCTCCGCGGAGGCCACCGGCTGCCGCCCGCGGGGCGCTGAGAGGGAGGGCTCCGCCGCGCCGCAGCGGCATGGGCGGCAGCAGGGGACACCGCACGAACGAGACCTCTGCGCTGAGCCGCTGAGGAGTGAGGACTGTGTCCGCCTGT
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| CDS seq | ATGCCGCTGCGGCGCGGCGGAGCCCTCCCTCTCAGCGCCCCGCGGGCGGCAGCCGGTGGCCTCCGCGGAGGCGGCGGCCGTGGTGCCGCGCTTCTCCACCCGACCTGCTTGTCGCCGCCGGGAACAACTGGCCGAGCCTTGGGCCTCAGTTGCCAGATGAAAAGAACCAGATGGAAGCCAGTCTTTGCCTTGGAAACAGGTGGACCATCTAACGCTGACAACCAAGATTTCGAAGATGATGGTGGCTTTCTTGGCAGAACAAGGCTGGGAAGACTCATCCAGGCTGCTGCGAGGGAACTACTTGAAAAACTGAATTCTGCCAGGAACAAATCCCCCACAAAGATTTTCCTTGTGCTCCTTGGCTTCTATACCGCCAATGCATTGGCAACAGTCCTGGGGCAGACTGGTGACTGGGATGTTTTTGTTGCTGCTATTGTAGTGGCTACCATTGAGGGAATTGGCATGCTCATGTACAGAAAACCGGCCAGTAGGCCTCCTGGACGATTTTGGTCAATGATCACAATGGTGAACTACTGGAAAGCCGGCGTATGTCTGGGCTTTTTTGTGGACGCGTTCAAAGTGGGAAGCTGA
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| Protein seq | MPLRRGGALPLSAPRAAAGGLRGGGGRGAALLHPTCLSPPGTTGRALGLSCQMKRTRWKPVFALETGGPSNADNQDFEDDGGFLGRTRLGRLIQAAARELLEKLNSARNKSPTKIFLVLLGFYTANALATVLGQTGDWDVFVAAIVVATIEGIGMLMYRKPASRPPGRFWSMITMVNYWKAGVCLGFFVDAFKVGS |
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| Function | Ycf20-like protein [UniProtKB/Swiss-Prot:O80813] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0287500 | OsNip_09t0287500-01 | Chr09 | 6439640 | 6441905 | - | RAP2018-11-26 | ||
| CDS seq | ATGCCGCTGCGGCGCGGCGGAGCCCTCCCTCTCAGCGCCCCGCGGGCGGCAGCCGGTGGCCTCCGCGGAGGCGGCGGCCGTGGTGCCGCGCTTCTCCACCCGACCTGCTTGTCGCCGCCGGGAACAACTGGCCGAGCCTTGGGCCTCAGTTGCCAGATGAAAAGAACCAGATGGAAGCCAGTCTTTGCCTTGGAAACAGGTGGACCATCTAACGCTGACAACCAAGATTTCGAAGATGATGGTGGCTTTCTTGGCAGAACAAGGCTGGGAAGACTCATCCAGGCTGCTGCGAGGGAACTACTTGAAAAACTGAATTCTGCCAGGAACAAATCCCCCACAAAGATTTTCCTTGTGCTCCTTGGCTTCTATACCGCCAATGCATTGGCAACAGTCCTGGGGCAGACTGGTGACTGGGATGTTTTTGTTGCTGCTATTGTAGTGGCTACCATTGAGGGAATTGGCATGCTCATGTACAGAAAACCGGCCAGTAGGCCTCCTGGACGATTTTGGTCAATGATCACAATGGTGAACTACTGGAAAGCCGGCGTATGTCTGGGCTTTTTTGTGGACGCGTTCAAAGTGGGAAGCTGA
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| Protein seq | MPLRRGGALPLSAPRAAAGGLRGGGGRGAALLHPTCLSPPGTTGRALGLSCQMKRTRWKPVFALETGGPSNADNQDFEDDGGFLGRTRLGRLIQAAARELLEKLNSARNKSPTKIFLVLLGFYTANALATVLGQTGDWDVFVAAIVVATIEGIGMLMYRKPASRPPGRFWSMITMVNYWKAGVCLGFFVDAFKVGS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.689481 | 4.112060 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0233333 | RBH | 2.311024 | 2.811174 | 4.469584 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g11520 | RBH | 1.802833 | 2.715468 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0287500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0004130 | RBH | 0.481357 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0004170 | RBH | 0.214510 | 0.0 | 0.622557 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0004200 | RBH | 1.592735 | 0.0 | 0.556853 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0004090 | RBH | 0.338650 | 0.058086 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0004230 | RBH | 5.589992 | 0.0 | 2.227300 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0113500 | RBH | 12.417275 | 4.940346 | 3.8491275 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0004250 | RBH | 0.744717 | 0.0 | 1.072606 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0107100 | RBH | 5.3195915 | 2.806099 | 3.238149 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0004210 | RBH | 0.764486 | 0.097896 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0004190 | RBH | 0.728971 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0004220 | RBH | 8.083807 | 2.873965 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0004110 | RBH | 1.396405 | 0.0 | 0.387558 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0004150 | RBH | 0.493432 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G004300 | RBH | 1.249125 | 0.749985 | 0.900616 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0004190 | RBH | 1.344798 | 3.893245 | 0.775607 |
