Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0233333 | OGI:02022080 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:7566715-7568989 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATCAATGAGAGAAGCAGCTTATTAAATGGTTTGCCTGGTGTGGAAATAGCCAACAATAGTCATCTTACAACAGACACCATTATTTATCTATAGACACATATGGACATCAGACTAGTGTAATACTACAAGAATTTCATAGAAGACTACATCAACATATGTACATTTTATAGCCGAGAAGTAATGTTTACGCTTCGCAGCAAATTTATCTGCATACAACAACACGGTAGCAGTTTGGAGCCTTGGGAGTTCATTCCACGTGTCATTGTGAGCTCAATGAATCAATAACATTAGTAAGTTGATACAAGAAGTTGATAGTGGGAAGGGAACTCAGCTTCCCAGTTTGAAGGCATCCACAAAAAGGCCCAGACATACGCCGGCTTTCCAGTAGTTCACCATTGCAATCAATGACTGGAATCGTCCAGGAGGTCTACTCATCGGTTTTCTGTACATAAGCATGCCAATTCCCTCTATGGCAGCCACTACAACACCAGCCACAAGAACATCCCAGTCACCAGTCTGCCCTAGGATTGTTGCCAATGCGTTGGCGGTATAGAAGCCAAACAGCACAAGGAATATCTTCGTGGGGGAGTTGCTTCTGGCAGAGTTCAGCTTTTCAAGTAGTTCCCTCCCAGCAGCTTGGATGAGCCTTCCCAGCCTTGTTCTACCAAGAAAGCCACCATCATCTTCGAAGTCTTGGCTATCAGCATTAGATGGTCCACCTGTTTCCAAGGCAAATACTGGCTTCCATCTAGAATTTTTCATCTGGTAACTATAGAGTGCAGATATCAAGTCAACTACCAAATCTTCTGCATAGTAGAGATCTGAAGAAATTGATTGCATCAATCTTTTATCTTTTCTCAATCTCTACAAACCTTCAGTCATGAAGCTAACTAGTAAATAATTCCACAAAGGATGGACACATCAGCAATTCATCTACTCCCATCCCCAAAAGAATATAAAATTGGTAACCTGACTAGTCAAATCTTCCTAAGTTTGACCGCCACTACATAGAAAACCTATTTATATTTATCATGTGAAAAAAGTATAACTAAACTGGCTCAAGAAATATTTTGGCACCGCAATACATTTACAGTTATTTTGCCAACACATATGACATTACTATACAAATTGATGGTCCAATTTATGCACTTGATACCATATCATGTCCGAAGTGTCGTATATTTTTTTAACAGATGGATTACTTTTATTGTTTCTATTTTTTTATTGAAAATAGTTTATGCATATAATAGGTAGATACCATATAAATTGAAAAATGGGTACTATCAGTAACAAGATTGACTGTCCACAAGTTCTTATTATATAATGATTACCTGCCAAATTCTTGTATTTTGTATGCCTTGCGGCATAATAACATTTCTGTTTGAAGATGCTAAACGAGATCTAGGTAGGCTACATTTTGCATCCATGTCACCTTGGAGAGCACAACTTGAACCCATGCATTTCCTAACAACGTGCGGTGAAACCTAATTACACTTCATTGTCTATTCCATTCTTTTGTTTGGGTGAGCCCTTATTGAATTCCTTTTAAACAGTCAATAATCCAACCTATGTCAACTGAAATGTATTTCTTCAAGTGTCCAGCTTATATCAACAAATATATGATTCTTCAATATAATCTGACTGATAGTCAGCAAAGATGCATTGTATAAATGATTGAACTCATCATAAACATAAAAAGATGTACTGAAAGCTAGATCTACTTATCAATGGTGCCACCGAGTAGAAATGTGTATGCAAATTAATTGTAGTAGGGGGAAATGCTGTTCATAGATTTAAAACTTTCGTAAACCAGCTCCTCCAAAATTCCTGTTGACAGAAAACTGACCCAAAGTTCTGGACGAGTCCAATGGAACCCAATTCCCAATTGATTTTTGGGATTTTTTTTTTTACAGAAATACTAGGTAGAGAAATTCAATACGCTGGAGAAGAGAAGAGAAGACAGCGAGCAGCGGCGTCGGGGGCTAACCTGAGCGCCGCTCCGCCCGTCGTCGCCGGCCACGAGAGGCTGCAGGTCCGGCGGAGGAGCGCGCGGCCGCAGAGACCGCCGGGTGCCGGCCGAAGAGGGGCGCGGGGAGGGAGGGCTCCGCGCCGCAGCGGCATGACCGGCGGGCAGCGGCGCCACGGGGCCTCTGTCAGTCTCAAGGCGGAGCTACCGCGACGGCGACGGCGGCGGCGGCGGCGGCGGGGTGAGGCGATGCGATGCGAAGTAGCCTGTGGTTGACAGTTTCGATGGTCTAGAATCGCGCCTTCTGTT
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| CDS seq | ATGAAAAATTCTAGATGGAAGCCAGTATTTGCCTTGGAAACAGGTGGACCATCTAATGCTGATAGCCAAGACTTCGAAGATGATGGTGGCTTTCTTGGTAGAACAAGGCTGGGAAGGCTCATCCAAGCTGCTGGGAGGGAACTACTTGAAAAGCTGAACTCTGCCAGAAGCAACTCCCCCACGAAGATATTCCTTGTGCTGTTTGGCTTCTATACCGCCAACGCATTGGCAACAATCCTAGGGCAGACTGGTGACTGGGATGTTCTTGTGGCTGGTGTTGTAGTGGCTGCCATAGAGGGAATTGGCATGCTTATGTACAGAAAACCGATGAGTAGACCTCCTGGACGATTCCAGTCATTGATTGCAATGGTGAACTACTGGAAAGCCGGCGTATGTCTGGGCCTTTTTGTGGATGCCTTCAAACTGGGAAGCTGA
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| Protein seq | MKNSRWKPVFALETGGPSNADSQDFEDDGGFLGRTRLGRLIQAAGRELLEKLNSARSNSPTKIFLVLFGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYRKPMSRPPGRFQSLIAMVNYWKAGVCLGLFVDAFKLGS |
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| Function | Ycf20-like protein [UniProtKB/Swiss-Prot:O80813] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0233333 | OsNip_02t0233333-00 | Chr02 | 7567042 | 7567476 | - | RAP2018-11-26 | ||
| CDS seq | ATGAAAAATTCTAGATGGAAGCCAGTATTTGCCTTGGAAACAGGTGGACCATCTAATGCTGATAGCCAAGACTTCGAAGATGATGGTGGCTTTCTTGGTAGAACAAGGCTGGGAAGGCTCATCCAAGCTGCTGGGAGGGAACTACTTGAAAAGCTGAACTCTGCCAGAAGCAACTCCCCCACGAAGATATTCCTTGTGCTGTTTGGCTTCTATACCGCCAACGCATTGGCAACAATCCTAGGGCAGACTGGTGACTGGGATGTTCTTGTGGCTGGTGTTGTAGTGGCTGCCATAGAGGGAATTGGCATGCTTATGTACAGAAAACCGATGAGTAGACCTCCTGGACGATTCCAGTCATTGATTGCAATGGTGAACTACTGGAAAGCCGGCGTATGTCTGGGCCTTTTTGTGGATGCCTTCAAACTGGGAAGCTGA
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| Protein seq | MKNSRWKPVFALETGGPSNADSQDFEDDGGFLGRTRLGRLIQAAGRELLEKLNSARSNSPTKIFLVLFGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYRKPMSRPPGRFQSLIAMVNYWKAGVCLGLFVDAFKLGS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0233333 | OsNip_02t0233333-01 | Chr02 | 7566715 | 7568989 | - | IsoSeq | ||
| CDS seq | ATGTCTGGGCCTTTTTGTGGATGCCTTCAAACTGGGAAGCTGAGTTCCCTTCCCACTATCAACTTCTTGTATCAACTTACTAATGTTATTGATTCATTGAGCTCA |
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| Protein seq | MSGPFCGCLQTGKLSSLPTINFLYQLTNVIDSLSS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.311024 | 2.811174 | 4.469584 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0287500 | RBH | 2.689481 | 4.112060 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g13910 | RBH | 0.128987 | 0.169674 | 0.095040 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0233333 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0009970 | RBH | 0.168888 | 2.336722 | 1.691427 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0010050 | RBH | 0.365044 | 1.195723 | 0.642383 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0009920 | RBH | 0.091906 | 0.0 | 2.235724 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0009760 | RBH | 0.053085 | 0.036993 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0009880 | RBH | 0.958777 | 0.0 | 4.905112 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0125700 | RBH | 1.2739315 | 1.93486 | 2.175588 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0009670 | RBH | 0.086005 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0129200 | RBH | 3.447722 | 2.979204 | 9.7190925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0010150 | RBH | 0.214037 | 0.075218 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0009830 | RBH | 0.162134 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0010130 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0010150 | RBH | 0.0 | 0.0 | 0.586789 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0009840 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G010030 | RBH | 0.159433 | 0.785889 | 1.057097 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0009850 | RBH | 0.398204 | 0.0 | 1.063570 |
