Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0124200 | OGI:09005190 | 1/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:1861984-1864201 | ||||||||
| Gene Symbol | OsCHB704, CHB704 | ||||||||||
| DNA seq | GTGCCCCTCCTCTCTCTCTCTCTCTCTCGCACACCCCCACCCCGCCGCCGCCTCCGCCTCCGTACCCCTACGCCGTGCCATCGCGCCTCCACCACTCGTCGCGCCCTCCACACGCCGCCGCATCAGCGCACGCGTCTTCCCCCTCTCTCGGTCGCTCCCTCCGCATCTCCCCTCCTCAACCCCTCGATCCACGTCGCCGCAGCCCCCTCCCTCGGTCGCTCCCTCCGCTTTCCTCCCCCGCATCGCTCGCGCTCGCTATCCAACCGCCGACGCCACTCCTCCCACCTCTTCGCCGCGCCCCGCCACGCCTCCACCGCCGGCGCCCCCATCGCCACGCTGCGCTACTCCGCGGTGCTCGGGATTGAGGCCGCCGTGCTCGTTGGCACAGCTCGGGACTCCACCTCGTCGCCGATCCCGCCCTCTTCCACTGGAGCTCCCTCGCTAGCCCGATGCAACTACATAAATGCAAATAAATGCAAGCTGCAGGTAATACGCTAATGCTCCCCATGCCCAAAAGGTGTTCGACAAAATGCTTGCTTAGACGTTACAGTTGTGATGTTCAGGGAAATCACTTAGGTTTTAATCCTCGCTGAGCCATATCATATATGAACTACGCCTGCCGCCGCTGCTCCGTCTCCGCCCTTCGTGCCGCTCGGGAGGAGTTGCGACGGGGTCGAGCCCCTCATCGCCGACTACCCTTCTCCGCTCGCAGCCACCGTCGTAGCGTTTAAGTCTCTGCATATGCTGAATCTGAAAGTACCAGCCTGCTCTTTTCTGCTCGTTGGGGATCAATAGGAAATGAATTTCAGACCGATACTAGCCTGCTGTTATAAGTCTCTGCATATGCTGAATCTGAAAGTACCACTTATAGTCATTATAGAACCAAACAGGTTGGAGCTTGCATGCTCAGTTGCGAACAGATGTATTTAGGTGCCAGTCTCTTCGGTTTGCCCATGGCTGCGATGCACAATAGCAGTTGCGAACAGAGTTTTCCTTCCTCGTATACCTCTATGTCCGTCTGATGATGATATGTTCCCGTTTCGCTTCAAGAGGAAGCAATTTCCGGTTAGATTGAGCTTTGCATTGACCATCAATAAGGCGCAGAGTCAAACAATTCCAAATGCAGGCGTCTACTTACCGGAGCCTGTCTTCTCTCATGGTCAATTATACGTCGCGTTGTCTAGAGCAACCTCTAGAACAAACATAAAAATACTATCGATGCCGGTAGAAGACAAGAAACAAAAGAAAAAGTCTAAGTGTACTGGCGTGAAGGACAATGAGAAGAAAGGAAAGGAATTGTCTAAACAGGCTGCAACATACACAAAAAATATTGTGTATAGAGAGGTCCTCACAGATTAGAAAAGGTATATTATGCGACTAATTAACCATCCACAATATGCTTGCTTAAATTCCATTCTTTCTGTAATTTTTATATTCCAAGTCAAACATTTCGTGTGTTTTTTTTCTTGGACAGTAGTAAACATTACTTTCGGTGGGATTTTGGCAAGGCCTATATACACCATTACAGGTATTGTGATCAACTGCAGGTTTTTTATGTGCTACTTATACTAGGAAATGAAAAATCGAAGATTTTTGCATTGTCGTTGTGTCCTACAACTCTACGAGTTTGGATGCAGGATGCTAGCGGACAAGTTATCCAGTGCCTGAACTCTGCTTTATCTAACCTGGTGGCTGACATTGACAACAAATCTATTTACAACACTCTATTATTAGTCTATTACCTGACTCTGGAAAACAACCATCAACTGCAAAACCATTTGATTCACATCCCTTCACCTGATCCCACCTGGTTTCTTGCTTAGGTAGCTTCATGGTAAGGTCAATATGGAGCTGATGATACTTCTATATGGTTCTTTTTTCTTCTTCTTTAATTTTTTTACCTAACAAAAGTACTGAAGCATAGTTCTTAGGTCTGATGATTTATTTAGCTGAATGCTGATTGTTTTCTCTTAAACCTTTCCACGCAGACTATGACAAAGGAAATTTGGATGCAGGCATGTCACAAACTGATTTCATCATTATGGAATCTGCAGAAATTCCAGGCTTTGGTGGTACTAGCTGGACTGACCAGGAGACCTTGCTTCTTTTGGAAGCTTTAGTAATTTTGCAAGCAAAATGGGGTGACATTGCAGAGCATGTTGATACAAAAACCAAAGCACAATGCATGCTGCACTGAGCAAGAGCGTTCTATTTGTTC
More
|
||||||||||
| CDS seq | CTTCATGACTATGACAAAGGAAATTTGGATGCAGGCATGTCACAAACTGATTTCATCATTATGGAATCTGCAGAAATTCCAGGCTTTGGTGGTACTAGCTGGACTGACCAGGAGACCTTGCTTCTTTTGGAAGCTTTAGTAATTTTGCAAGCAAAATGGGGTGACATTGCAGAGCATGTTGATACAAAAACCAAAGCACAATGCATGCTGCACTGA |
||||||||||
| Protein seq | LHDYDKGNLDAGMSQTDFIIMESAEIPGFGGTSWTDQETLLLLEALVILQAKWGDIAEHVDTKTKAQCMLH |
||||||||||
| Function | SWI/SNF complex subunit SWI3D [UniProtKB/Swiss-Prot:Q8VY05] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0124200 | OsNip_09t0124200-01 | Chr09 | 1861984 | 1864201 | + | RAP2018-11-26 | ||
| CDS seq | CTTCATGACTATGACAAAGGAAATTTGGATGCAGGCATGTCACAAACTGATTTCATCATTATGGAATCTGCAGAAATTCCAGGCTTTGGTGGTACTAGCTGGACTGACCAGGAGACCTTGCTTCTTTTGGAAGCTTTAGTAATTTTGCAAGCAAAATGGGGTGACATTGCAGAGCATGTTGATACAAAAACCAAAGCACAATGCATGCTGCACTGA
More
|
|||||||
| Protein seq | LHDYDKGNLDAGMSQTDFIIMESAEIPGFGGTSWTDQETLLLLEALVILQAKWGDIAEHVDTKTKAQCMLH |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.734854 | 0.000000 | 1.054748 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0110300 | RBH | 0.402105 | 0.443764 | 2.449999 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g01970 | SBH | 0.554467 | 0.342157 | 0.825556 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0124200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0000470 | SBH | 0.521763 | 0.902381 | 3.623049 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0000490 | SBH | 0.213881 | 0.696988 | 0.938880 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0000450 | SBH | 0.417473 | 0.734755 | 3.100100 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0000520 | SBH | 0.145142 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0000460 | SBH | 2.692607 | 1.185818 | 4.789528 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0008300 | SBH | 2.2608615 | 6.516991 | 10.5329175 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0000480 | SBH | 0.099885 | 0.231016 | 0.675057 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0010600 | SBH | 4.1091185 | 6.6966045 | 12.9697605 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0000470 | SBH | 0.028488 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0000480 | SBH | 0.391566 | 2.960347 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0020370 | SBH | 0.0 | 6.706713 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0000460 | SBH | 0.656291 | 0.163483 | 0.553916 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0000470 | SBH | 0.162179 | 1.409649 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G000490 | SBH | 0.134701 | 0.917185 | 1.128007 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0000440 | SBH | 1.119795 | 2.718743 | 3.250058 |
