Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_11g0020370 | OGI:11035020 | 1/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr11:26742951-26745195 | ||||||||
| Gene Symbol | OsCHB704, CHB704 | ||||||||||
| DNA seq | gaacaaatagaacgctcttgctcagtgcagcatgcattgtgctttggtttttgtatcaacatgctctgcaatgtcaccccattttgcttgcaaaattactaaagcttccaaaagaagcaaggtctcctggtcagtccagctagtaccaccaaagtctggaatttctgcagattccataatgatgaaatcagtttgtgacatgcctgcatccaaatttcctttgtcatagtctgcgtggaaaggtttaagagaaaacaatcagcattcagctaaataaatcatcagacctaagaactatgcttcagtacttttgttaggtaaaaaaattaaagaagaaaaaagaaccatatagaagtatcatcagctccatattgaccttaccatgaagctacctaagcaagaaaccaggtgggatcaggtgaagggatgtgaatcaaatggttttgcagttgatggttgttttccagagtcaggtaatagactaataatagagtgttgtaaatagatttgttgtcaatgtcagccaccaggttagataaagcagagttcaggcactggataacttgtccgctagcatcctgcatccaaacttgtagagttgtaggacacaacgacaatgcaaaaatcttcgatttttcatttcctagtataagtagcacataaaaatcctgcagttgatcacaatacctgtaatggtgtatataggccttgccaaaatcccaccgaaagtaatgtttactactgtccaagaaaaaaaacacacgaaatgtttgacttggaatataaaaattacagaaagaatggaatttaagcaagcatattgtggatggttaattagtcgcataatatactttttctaatctgtgaggacctctctagacacaatattttttgtgtatgttgcagcctgtttagacaattcctttcttttcttctcattgtccttcacgccagtacacttagactttttcttttgtttcttgtcttctaccggcatcgatagtatttttatgtttgttctagaggttgctctagacaacgcgacatataattgaccatgagagaagacaggctccggtaagtagacgcttgcatttggaattgtttgaccctgcgccttattgatggtcaatgcaaagctcaatctaaccggaaattgcttcctcttgaagcgaaacaggaacatatcatcatcagaaggacatagaggtatacgaggaaggaaaactctgttcgcaattgctattgtgcattgcagccatgggcaaaccgaagagactggcacctaaatacatctgttcgcaactgagcatgcaagctccaacctgtttggttctataatgactataagtggtactttcagattcagcatatgcagagacttataacagcaggctagtatcggtctgaaattcatttcctattgatccccaacgagcagaaaagagcaggctggtactttcagattcagcatatgcagagacttaaacgctacgacagtggctgcgagcggagaagggtagtcggcgatgagggctcgaccctgtcgcaactcctcccgagcggcacaaagggcggaggcggagcagcggcggcaggcgtagttcatatatgatatggctcagcgaggattaaaacctaagtgatttccctgaacatcacaactgtaacgtctaagcaagcattttgtcgaacaccttttgggcatggggagcattagcgtattacctgcagcttgcatttatttgcatttatatagttgcatcgggctagcgagggagctccagtggaagagagcgggatcggcgacgaggtggagtcccgagctgtgccaacgagcacggcggcctcaatcccgagcaccgcggagtagcgcggcgcggcgatgggggcgccggcggtggaggcgtggcggggcgcggcgaagaggtgggaggagtggcgtcggcggttggatagcgagcgcgagcgatgcgggggaggaaagcggagggagcgaccgagggagggggctgcggcgacgtggatcgaggggttgaggaggggagatgcggagggagcgaccgagagagggggaagacgcgtgcgctgatgcggcggcgtgtggagggcgcgacgagtggtggaggcgcgatggcacggcgtaggggtacggaggcggaggcggcggcggggtgggggtgtgcgagagagagagagagagagagaggaggggcacaacgacggggggattggggggcgccat
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| CDS seq | atggcgccccccaatccccccgtcgttgtgcccctcctctctctctctctctctctctcgcacacccccaccccgccgccgcctccgcctccgtacccctacgccgtgccatcgcgcctccaccactcgtcgcgccctccacacgccgccgcatcagcgcacgcgtcttccccctctctcggtcgctccctccgcatctcccctcctcaacccctcgatccacccccctccctcggtcgctccctccgctttcctcccccgcatcgctcgcgctcgctatccaaccgccgacgccactcctcccacctcttcgccgcgccccgccacgcctccaccgccggcgcccccatcgccgcgccgcgctactccgcggtgctcgggattgaggccgccgtgctcgttggcacagctcgggactccacctcgtcgccgatcccgctctcttccactggagctccctcgctagcccgatgcaactatataaatgcaaataaatgcaagctgcagcttcatgactatgacaaaggaaatttggatgcaggcatgtcacaaactgatttcatcattatggaatctgcagaaattccagactttggtggtactagctggactgaccaggagaccttgcttcttttggaagctttagtaattttgcaagcaaaatggggtgacattgcagagcatgttgatacaaaaaccaaagcacaatgcatgctgcactga
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| Protein seq | MAPPNPPVVVPLLSLSLSLSHTPTPPPPPPPYPYAVPSRLHHSSRPPHAAASAHASSPSLGRSLRISPPQPLDPPPSLGRSLRFPPPHRSRSLSNRRRHSSHLFAAPRHASTAGAPIAAPRYSAVLGIEAAVLVGTARDSTSSPIPLSSTGAPSLARCNYINANKCKLQLHDYDKGNLDAGMSQTDFIIMESAEIPDFGGTSWTDQETLLLLEALVILQAKWGDIAEHVDTKTKAQCMLH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_11g0020370 | OsGoSa_11g0020370.01 | Chr11 | 26742951 | 26745195 | - | NAM | ||
| CDS seq | atggcgccccccaatccccccgtcgttgtgcccctcctctctctctctctctctctctcgcacacccccaccccgccgccgcctccgcctccgtacccctacgccgtgccatcgcgcctccaccactcgtcgcgccctccacacgccgccgcatcagcgcacgcgtcttccccctctctcggtcgctccctccgcatctcccctcctcaacccctcgatccacccccctccctcggtcgctccctccgctttcctcccccgcatcgctcgcgctcgctatccaaccgccgacgccactcctcccacctcttcgccgcgccccgccacgcctccaccgccggcgcccccatcgccgcgccgcgctactccgcggtgctcgggattgaggccgccgtgctcgttggcacagctcgggactccacctcgtcgccgatcccgctctcttccactggagctccctcgctagcccgatgcaactatataaatgcaaataaatgcaagctgcagcttcatgactatgacaaaggaaatttggatgcaggcatgtcacaaactgatttcatcattatggaatctgcagaaattccagactttggtggtactagctggactgaccaggagaccttgcttcttttggaagctttagtaattttgcaagcaaaatggggtgacattgcagagcatgttgatacaaaaaccaaagcacaatgcatgctgcactga
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| Protein seq | MAPPNPPVVVPLLSLSLSLSHTPTPPPPPPPYPYAVPSRLHHSSRPPHAAASAHASSPSLGRSLRISPPQPLDPPPSLGRSLRFPPPHRSRSLSNRRRHSSHLFAAPRHASTAGAPIAAPRYSAVLGIEAAVLVGTARDSTSSPIPLSSTGAPSLARCNYINANKCKLQLHDYDKGNLDAGMSQTDFIIMESAEIPDFGGTSWTDQETLLLLEALVILQAKWGDIAEHVDTKTKAQCMLH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 6.706713 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0183700 | SBH | 3.400943 | 4.631687 | 10.870774 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0183700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0001080 | SBH | 0.172642 | 0.000000 | 1.388937 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0001060 | SBH | 0.135038 | 1.352159 | 1.679745 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0005520 | SBH | 1.904474 | 12.639018 | 10.936642 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0000980 | SBH | 0.168383 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0005350 | SBH | 12.265910 | 18.336168 | 14.191726 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0005370 | SBH | 0.263085 | 0.276568 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0005410 | SBH | 0.978654 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0001210 | RBH | 2.384327 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0005440 | SBH | 0.834627 | 0.0 | 1.157531 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0005430 | SBH | 0.763536 | 5.495848 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
