Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0404200 | OGI:08056670 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:19304751-19305834 | ||||||||
| Gene Symbol | RPL27-2, rpl27-2, rpl27, mtRPL27a, S27, S27(t), S27(t)*, RPL27-1, rpl27-1, rpl27, mtRPL27b, S27, S27(t), S27(t)*, S28 | ||||||||||
| DNA seq | ATGGCTTTTTCATCAGTTTTCAGGAGAGGAAATGTCAAAGAATTGATCTCAAATGTTTCGGTCTACACTAGCGCAGCAGGTAATGGCTTTGGCTTTAGGCAGTCTGAGACTCTTGACTGACTTGAGTCTGTATTTGTGCTATTTTGAATAAGGTGCTTGGCTGTTTGAATGACAAAATATACCTCATTGCAGAGTCATCTGGAGGATTGAGCTTGATTTTTAAGCGTTGGGCCACCAAAAAGACAGCTGGATCAACAAAAAATGGCCGTGACTCTAACCCTAAGTATTTGGGTGTTAAAAAGTTTGGCGGAGAGGTACAATCTTGTGATCTGTCATATGACTTTCATGTTTTTTTATTGTTTATGACAGCACAAAGTACTTTCTTTAATCACGTAAAAGTAATCAGACTTCGGAGATTTGTGTGTCCCTTCTGATCCCGTACCTGAACTCCTGAAGCAACTTGTCATTTTTGTTATTAGAACAAAAAGGTGAAAAAGATCTAAACTGTTCCTGAACATCAGCATTTGCATCATTTTTCAGAAAGTGGAGCCAGGAAACATCATCATCCGCCAAAGAGGAACCCGCTTCCATCCTGGGAACTACGTTGGCATGGGGAAGGACCATACTCTCTTCTGTCTGAAAGAAGGACATGTGCGATTCGAGCGCAACAAGCTGACTGGCAGGAAATGGGTTCATGTTGATCCTGTTGCTGGGCATGTGCTCCACCCTGTCTACGCCAGTGATTCGACCCCTGCAGCTGAAATGGAGCCATTGTAATGGCTTTACATGGAATGAAGTAACATATGTTGCTGACAGCTTTCGTCCTTGCCTTGAGAGTGACTTCTCTAAAGAAACTTATTGCGATTAAGAGGCTTCTGGGTTGAATTTGCTTGCAATAAGGAACCTAACCATCATGTTTAGAACCCTTTTGTTTTTGGTTCTTGCTGTGGCTTAAAGTTGTTTGTTTTAAGTATCCTTTGTGATTTGTGGCATGAAGGTTGACAAACCTACATGATTTATGAACACACAGAAATTCTAAAAATGTTGCTTGGGCCGGGAAAGTCAAGATGCTTATTTTTCTTCG
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| CDS seq | ATGGCTTTTTCATCAGTTTTCAGGAGAGGAAATGTCAAAGAATTGATCTCAAATGTTTCGGTCTACACTAGCGCAGCAGAGTCATCTGGAGGATTGAGCTTGATTTTTAAGCGTTGGGCCACCAAAAAGACAGCTGGATCAACAAAAAATGGCCGTGACTCTAACCCTAAGTATTTGGGTGTTAAAAAGTTTGGCGGAGAGAAAGTGGAGCCAGGAAACATCATCATCCGCCAAAGAGGAACCCGCTTCCATCCTGGGAACTACGTTGGCATGGGGAAGGACCATACTCTCTTCTGTCTGAAAGAAGGACATGTGCGATTCGAGCGCAACAAGCTGACTGGCAGGAAATGGGTTCATGTTGATCCTGTTGCTGGGCATGTGCTCCACCCTGTCTACGCCAGTGATTCGACCCCTGCAGCTGAAATGGAGCCATTGTAA
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| Protein seq | MAFSSVFRRGNVKELISNVSVYTSAAESSGGLSLIFKRWATKKTAGSTKNGRDSNPKYLGVKKFGGEKVEPGNIIIRQRGTRFHPGNYVGMGKDHTLFCLKEGHVRFERNKLTGRKWVHVDPVAGHVLHPVYASDSTPAAEMEPL |
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| Function | 50S ribosomal protein L27 [UniProtKB/Swiss-Prot:Q2G9U8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0404200 | OsNip_08t0404200-00 | Chr08 | 19304751 | 19305527 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCTTTTTCATCAGTTTTCAGGAGAGGAAATGTCAAAGAATTGATCTCAAATGTTTCGGTCTACACTAGCGCAGCAGAGTCATCTGGAGGATTGAGCTTGATTTTTAAGCGTTGGGCCACCAAAAAGACAGCTGGATCAACAAAAAATGGCCGTGACTCTAACCCTAAGTATTTGGGTGTTAAAAAGTTTGGCGGAGAGAAAGTGGAGCCAGGAAACATCATCATCCGCCAAAGAGGAACCCGCTTCCATCCTGGGAACTACGTTGGCATGGGGAAGGACCATACTCTCTTCTGTCTGAAAGAAGGACATGTGCGATTCGAGCGCAACAAGCTGACTGGCAGGAAATGGGTTCATGTTGATCCTGTTGCTGGGCATGTGCTCCACCCTGTCTACGCCAGTGATTCGACCCCTGCAGCTGAAATGGAGCCATTGTAA
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| Protein seq | MAFSSVFRRGNVKELISNVSVYTSAAESSGGLSLIFKRWATKKTAGSTKNGRDSNPKYLGVKKFGGEKVEPGNIIIRQRGTRFHPGNYVGMGKDHTLFCLKEGHVRFERNKLTGRKWVHVDPVAGHVLHPVYASDSTPAAEMEPL |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0404200 | OsNip_08t0404200-01 | Chr08 | 19305366 | 19305834 | + | IsoSeq | ||
| CDS seq | GGACCATACTCTCTTCTGTCTGAAAGAAGGACATGTGCGATTCGAGCGCAACAAGCTGACTGGCAGGAAATGGGTTCA |
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| Protein seq | GPYSLLSERRTCAIRAQQADWQEMGS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.744123 | 1.739778 | 11.597155 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0404300 | RBH | 1.585747 | 3.975688 | 14.732709 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g31228 | RBH | 0.709705 | 1.651780 | 2.354989 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0404200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0015420 | RBH | 0.998519 | 19.461288 | 8.840508 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0015280 | RBH | 0.371577 | 3.511472 | 5.113299 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0015210 | SBH | 1.688152 | 56.927177 | 38.872955 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0015510 | SBH | 0.000000 | 0.991391 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0015310 | SBH | 23.485239 | 26.640648 | 21.998865 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0305700 | RBH | 5.039104 | 13.0379445 | 17.6349825 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0015340 | SBH | 0.430481 | 3.429292 | 3.021912 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0327800 | SBH | 7.8966425 | 20.0572235 | 18.137907 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0014810 | SBH | 1.191718 | 0.689922 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0014940 | RBH | 1.697475 | 55.090618 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0014860 | RBH | 16.672585 | 77.881912 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0015550 | RBH | 2.051788 | 4.198605 | 5.157159 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0014970 | SBH | 0.769244 | 9.563818 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G015050 | RBH | 0.0 | 19.364340 | 5.438639 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0015200 | RBH | 5.338657 | 63.968662 | 21.806637 |
