Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0382800 | OGI:08052980 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:18027778-18029413 | ||||||||
| Gene Symbol | OsFbox443, Os_F0084, OsSTA212 | ||||||||||
| DNA seq | AATCCCCAAATCCACCGCGCAGACACGCACGCCGGCCGGCCGGCGGACGCGATCCGCTCCGTTGTCATCGCTCGCGATACACGCAGCGACTAGGCCCAGCAGGTCTGCACGGCGGTCTCCTCCGGCTGCTCCTTTCATTCCAGGCACGCCGGGCACCCCCGGTTCGTTCATCGCATCTCAAAGAAGGTAGGGAAGCATCGCATCTCGCCGGGTATTGCCAGTTCGCCGCCATGCCCCAACCGAAGTGCCCAACGGAGCGGAAGAAGGCTGACCACCTCCAATTGATTCCTTGCGGGGCCCCGGCCGGGTCTTGCGGGGGGGTCTTGCAGGATAACAATGTGCACCAAGATTGATGTAAGTTGCTCCGAGCATATAGTGATGTAAATTCTTATACTCTCACACATCGGCGACATCATGTGTTATTCTTGAATACTCTCCCGCGCCTAGCCGTAGCCCGAAGGCACTGAGCCTCAATACGCATATCATATCTACCAGTTCTCCTTTATTTTTCCATTGTTATTAGAGAACCGGATCTGAGCCGTCTTGGTCTCATGTCTTTCTTTCTGTCTTTTTTTCTTTTCCTAAAAAAAAAATTAAAATTGGATCTTGCCTGGCAGTCCCGTTGTAAGACGAACACCTTGTCCGGAAAGGATGTCGATTCCAAAAATAACACGGAGACCATGTTCGAGTTCATTTACCAATAATCCCTATGGCACGCATATATACATATATAAGTATAGCCGATGCAGTGTATTGTATACAGATTATTATTATTATTTTCTAACACCGCTAGTTAACTCATTGCTAATTCTGCATGTACTTGGCGCCATGGACTATGAATTCAAGACATACAAGAAGAGGCAGAGGGGACAACAGCAAATGGACTTTGAATTGAAGACATACCACAGGAAGAGGCAGAGGCGAAGGGGGCACCAGCAAACTGTAGAGTTACCCGATGAGATTGTGAGGGAAGTCTTGATCTGGCTCCCTGTAAAATCCCTGGCAAGGTTCAAGTCCGTCTGCAAGGCCTGGCTTTCCATTATCTCCGAATCTTGTTTTATCCGTGAGCATCTCCAGTGCTCCAAGCTGAAAAGATACTGGAACCCGTCTTCCTTTCTCATCACGCCCCATATTCCTCTGAAACCAGGTGACTCTATCTTTGCTGCTTTCTCCACCGACATCCGCTTCTATCAGTGGTCATTACAAGAAGACACGAGGGCTGCTGCAACACTCCTTTATAGGAGGCACTTCCCTGCCGGTGAGTTTGAACCGGTGCTCCCAATGGCACATTGCGATGGCTTGGTGCTGCTCCCCACTAAGACCAAGGCCTACGTCTTCAATCCGGCCACAAGGGATGTCCTTGCACTGCCAGAGAGCAATCGCAACATGAGGCAACGTGACAACTTGGGCTTTGATGCTTCGACTGGCAAATATAAGGTTGCACGATCTTTTTATCGTTCCCGTGAATATAATCCCATGGGGATCGCTGCAATGGGTTTCGAGGTCTTCACTATTAATGGAGAAGAAAGCTGTTGGAGAGAAACTTTGGTGGATCCACCCTACCCTGTGCTGTATTCAAAGATTGTTACACACTGCAAGGGGTGTCTATTCTATTACATTGATAAGAAGAATCAGC
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| CDS seq | ATGTCGATTCCAAAAATAACACGGAGACCATGTTCGAGTTCATTTACCAATAATCCCTATGGCACGCATATATACATATATAAGTATAGCCGATGCAGTGTATTGTATACAGATTATTATTATTATTTTCTAACACCGCTAGTTAACTCATTGCTAATTCTGCATGTACTTGGCGCCATGGACTATGAATTCAAGACATACAAGAAGAGGCAGAGGGGACAACAGCAAATGGACTTTGAATTGAAGACATACCACAGGAAGAGGCAGAGGCGAAGGGGGCACCAGCAAACTGTAGAGTTACCCGATGAGATTGTGAGGGAAGTCTTGATCTGGCTCCCTGTAAAATCCCTGGCAAGGTTCAAGTCCGTCTGCAAGGCCTGGCTTTCCATTATCTCCGAATCTTGTTTTATCCGTGAGCATCTCCAGTGCTCCAAGCTGAAAAGATACTGGAACCCGTCTTCCTTTCTCATCACGCCCCATATTCCTCTGAAACCAGGTGACTCTATCTTTGCTGCTTTCTCCACCGACATCCGCTTCTATCAGTGGTCATTACAAGAAGACACGAGGGCTGCTGCAACACTCCTTTATAGGAGGCACTTCCCTGCCGGTGAGTTTGAACCGGTGCTCCCAATGGCACATTGCGATGGCTTGGTGCTGCTCCCCACTAAGACCAAGGCCTACGTCTTCAATCCGGCCACAAGGGATGTCCTTGCACTGCCAGAGAGCAATCGCAACATGAGGCAACGTGACAACTTGGGCTTTGATGCTTCGACTGGCAAATATAAGGTTGCACGATCTTTTTATCGTTCCCGTGAATATAATCCCATGGGGATCGCTGCAATGGGTTTCGAGGTCTTCACTATTAATGGAGAAGAAAGCTGTTGGAGAGAAACTTTGGTGGATCCACCCTACCCTGTGCTGTATTCAAAGATTGTTACACACTGCAAGGGGTGTCTATTCTATTACATTGATAAGAAGAATCAGC
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| Protein seq | MSIPKITRRPCSSSFTNNPYGTHIYIYKYSRCSVLYTDYYYYFLTPLVNSLLILHVLGAMDYEFKTYKKRQRGQQQMDFELKTYHRKRQRRRGHQQTVELPDEIVREVLIWLPVKSLARFKSVCKAWLSIISESCFIREHLQCSKLKRYWNPSSFLITPHIPLKPGDSIFAAFSTDIRFYQWSLQEDTRAAATLLYRRHFPAGEFEPVLPMAHCDGLVLLPTKTKAYVFNPATRDVLALPESNRNMRQRDNLGFDASTGKYKVARSFYRSREYNPMGIAAMGFEVFTINGEESCWRETLVDPPYPVLYSKIVTHCKGCLFYYIDKKNQ |
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| Function | Putative F-box/kelch-repeat protein At1g12870 [UniProtKB/Swiss-Prot:Q9LPW2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0382800 | OsNip_08t0382800-01 | Chr08 | 18027778 | 18029413 | + | RAP2018-11-26 | ||
| CDS seq | ATGTCGATTCCAAAAATAACACGGAGACCATGTTCGAGTTCATTTACCAATAATCCCTATGGCACGCATATATACATATATAAGTATAGCCGATGCAGTGTATTGTATACAGATTATTATTATTATTTTCTAACACCGCTAGTTAACTCATTGCTAATTCTGCATGTACTTGGCGCCATGGACTATGAATTCAAGACATACAAGAAGAGGCAGAGGGGACAACAGCAAATGGACTTTGAATTGAAGACATACCACAGGAAGAGGCAGAGGCGAAGGGGGCACCAGCAAACTGTAGAGTTACCCGATGAGATTGTGAGGGAAGTCTTGATCTGGCTCCCTGTAAAATCCCTGGCAAGGTTCAAGTCCGTCTGCAAGGCCTGGCTTTCCATTATCTCCGAATCTTGTTTTATCCGTGAGCATCTCCAGTGCTCCAAGCTGAAAAGATACTGGAACCCGTCTTCCTTTCTCATCACGCCCCATATTCCTCTGAAACCAGGTGACTCTATCTTTGCTGCTTTCTCCACCGACATCCGCTTCTATCAGTGGTCATTACAAGAAGACACGAGGGCTGCTGCAACACTCCTTTATAGGAGGCACTTCCCTGCCGGTGAGTTTGAACCGGTGCTCCCAATGGCACATTGCGATGGCTTGGTGCTGCTCCCCACTAAGACCAAGGCCTACGTCTTCAATCCGGCCACAAGGGATGTCCTTGCACTGCCAGAGAGCAATCGCAACATGAGGCAACGTGACAACTTGGGCTTTGATGCTTCGACTGGCAAATATAAGGTTGCACGATCTTTTTATCGTTCCCGTGAATATAATCCCATGGGGATCGCTGCAATGGGTTTCGAGGTCTTCACTATTAATGGAGAAGAAAGCTGTTGGAGAGAAACTTTGGTGGATCCACCCTACCCTGTGCTGTATTCAAAGATTGTTACACACTGCAAGGGGTGTCTATTCTATTACATTGATAAGAAGAATCAGC
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| Protein seq | MSIPKITRRPCSSSFTNNPYGTHIYIYKYSRCSVLYTDYYYYFLTPLVNSLLILHVLGAMDYEFKTYKKRQRGQQQMDFELKTYHRKRQRRRGHQQTVELPDEIVREVLIWLPVKSLARFKSVCKAWLSIISESCFIREHLQCSKLKRYWNPSSFLITPHIPLKPGDSIFAAFSTDIRFYQWSLQEDTRAAATLLYRRHFPAGEFEPVLPMAHCDGLVLLPTKTKAYVFNPATRDVLALPESNRNMRQRDNLGFDASTGKYKVARSFYRSREYNPMGIAAMGFEVFTINGEESCWRETLVDPPYPVLYSKIVTHCKGCLFYYIDKKNQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.249544 | 0.478088 | 0.333339 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g29400 | SBH | 0.076520 | 0.201057 | 0.081483 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0382800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0014480 | SBH | 0.212620 | 2.936918 | 3.356278 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0014320 | RBH | 0.139845 | 1.014001 | 0.977033 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0014330 | SBH | 0.453947 | 4.272779 | 6.378200 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0014540 | RBH | 0.041680 | 0.121261 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0014380 | RBH | 1.831200 | 7.578071 | 7.360724 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0014410 | RBH | 0.000000 | 0.280579 | 0.715929 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0013920 | SBH | 0.039129 | 0.244116 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0014010 | RBH | 0.106356 | 2.752036 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0013890 | RBH | 1.322704 | 9.217881 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0014650 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0014040 | RBH | 0.0 | 1.020748 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G014050 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0014210 | SBH | 0.0 | 0.0 | 0.0 |
