Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0013920 | OGI:08052970 | 6/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:18525023-18529005 | ||||||||
| Gene Symbol | OsFbox443, Os_F0084, OsSTA212 | ||||||||||
| DNA seq | atgcctttatcgctccagatgctgaagcggaagaagcagcagcagctggtggtgtggcagacgcggtgggacgagcggctactggactccgccggcgactcgatggggcgcaccttcttgtcgatggtgctcatcgtgcaggagctgcagagcttcgcgctgcagcagatgcgggaggcaatgctgggcgacaaccaacagggcgtcctggcgcgagtccatggcgagatgcacgcctccttcgtctggctcttccaggacatcttcgccggcaccctggctctcatggtctcccccatgctcctcctcgccaacttcatcgtccactcatgggtcagtgtcgccgccgcagcagccatccctcccgctctaccttccaccgcggctgtcgcggtggtcgacacccaacacgccgacccatcccagtgggttaaacactattgacccaagggcaaagttgtctctctccattaataataaaataataggagtatccagccgctaattaccactttttacagtgtccataaaaagattcacgttcttcgggtgtcttaaagcaaatgccacaatctttgagtgccctgtagcaaattttgcctttagattatatgcatgtcgccacatgaataatacaattctttgggtaaagcaagcattggtaaggttgcaatcgctaaagttgggtttattacatttaagatgttccaatttttttatgatgtcttagctacaacgaccgatacaaacattatcattgacatggttatacttgaaaagtagttagatttttttcacccgttacgacgcacggacatttttgctagtaatacacatgttactcccgtgtatgatacaatgggtggtgtacttaagaatactaactatcacacttaggggtgaaaacgggcgggtacggtcagattatggcattcccatatcctaacccatattttcttttaaattcagaaccggatacggatagtaccggataatatatcactcatcccgtatcctatcccatattatttccttcgaatcgtatttgggaacggatatctatttgtatctctaattcatagatattaaatatcataaggtcattgaagtattaaaatacatacatcaagaaaaaaaattaaccgatcttttatcatgtttctaggtagatttataataaatttacatacatattttataatacgggacatacggacggatacatgtctttccgtttcgtaacccatatttttctaacgaattcggattcgaactcggtatcccattttttctcccatatttctcccgcgagcctcgggtcaggcgggcggtcgggaaatacccgctccattttcacccctaatcacactaagtttgagctaccaaattttgtagacatatgctccgtcaccttttgtgatagagagagacgattcaaaagataaggaaaccaaaatagatttattctgagatagtactcctgtaacagaagaaacccaccgaaggcccaataaagtggaagcatataaccctaggcccttgtaaggtaaccctagggctaaccaccagcttcctcccaatccccaaatccaccgcgcagacacgcacgccggccggccgccggacgcgatccgctccgttgtcatcgctcgcgatacacgcagcgactaggcccagcaggtctgcacggcggtctcctccggctgctcctttcattccaggcacgccgggcacccccggttcgttcatcgcatctcaaagaaggtagggaagcatcgcatctcgccgggcattgccagttcgccgccatgccccaaccgaagtgcccaacggagcggaagaaggctgaccacctccaattgattccttgcggggccccggccgggtcttgcgggggggtcttgcaggataacaatgtgcaccaagattgatgtaagttgctccgagcatatagtgatgtaaattcttatactctcacacattggcgacatcatgtgttattcttgaatactctcccgcgcctagccgtagcccgaaggcactgagcctcaatacgcatatcatatctaccagttctcctttatttttccattgttattagagaaccggatctgagccgtcttggtctcatgtctttctttctgtcttctttttttcttttcctaaaaaaaaattaaaattggatcttgcctggcagtcccgttgtaagacgaacaccttgtccggaaaggatgtcgattccaaaaataacacggagaccatgttcgagttcatttaccaataatccctatggcacgcatatatacatatataagtatagccgatgcagtgtattgtatacagattattattattattttctaacaccgctagttaactcattgctaattctgcatgtacttggcgccatggactatgaattcaagacatacaagaagaggcagaggggacaacagcaaatggactttgaagaggcagaggcgaagggggcaccagcaaactgtagagttacccgatgagattgtgagggaagtcttgatctggctccctgtaaaatccctggcaaggttcaagtccgtctgcaaggcctggctttccattatctccgaatcttgttttatccgtgagcatctccagtgctccaagctgaaaagatactggaacccgtcttcctttctcatcacgccccatattcctctgaaaccaggtgactctatctttgctgctttctccaccgacatccgcttctatcagtggtcattacaagaagacacgagggctgctgcaacactcctttataggaggcacttccctgccggtgagtttgaaccggtgctcccaatggcacattgcgatggcttggtgctgctccccactaagaccaaggcctacgtcttcaatccggccacaagggatgtccttgcactgccagagagcaatcgcaacatgaggcaacgtgacatctgccccccaattggcttgggctttgatgcttcgactggcaaatataaggttgcacgatctttttatcgttcccgtgaatataatcccatggggatcgctgcaatgggtttcgaggtcttcacattaatggagaagaaagctgttggagagaaactttggtggatccaccctaccctgtgctgtattcaaagattgttacacactgcaaggggtgtctattctattacattgataggaagaatcagcaaaatcccccacaggctctgctccgtttcagccttcaagacgaaacatttggtgtcacttcgttgcttactgacacgtaccctcaagttgaagatgatgaagttacaattactgagcttggcggtcaactatgtgctactttcttttgcaatactctgcaacaagtatgtatctacatgtcaggagatgtcatggatccagattggaattgttggcatataataaactttatgaattgctatccaatagcctcgcttggcagcggtcggattttattgaggagaggtagtcttgtcttctgtactaatctgaaatcgtacagcatagaagataaattggatattgatgatataaggtaccttgggcccaatgaagacaacttggggcatgcatgggaagacttatgctggtatgacatacttccttacaccgaaagtcttgttccaattattcctagggccaccttacaggccttataatgtgtatgcctttgcgcaccaacttagtggataacccaacatcttcatcgagggaagcatgaagaaaaagaagaatgaagattatttaatgatttaaggggcacttaaatgaggtgttgcatgtttgttatttgagagccggttcattttgtagtgtaaaattttggcatatagccaatatttggtcaggtggtcaggttgagaagtataagttatgtttagattgttaccattgtcttgtgagacgaagattctataattaacaaagtttggtaatggagacaagtttcggca
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| CDS seq | atgcctttatcgctccagatgctgaagcggaagaagcagcagcagctggtggtgtggcagacgcggtgggacgagcggctactggactccgccggcgactcgatggggcgcaccttcttgtcgatggtgctcatcgtgcaggagctgcagagcttcgcgctgcagcagatgcgggaggcaatgctgggcgacaaccaacagggcgtcctggcgcgagtccatggcgagatgcacgcctccttcgtctggctcttccaggacatcttcgccggcaccctggctctcatggtctcccccatgctcctcctcgccaacttcatcgtccactcatggtgctccaagctgaaaagatactggaacccgtcttcctttctcatcacgccccatattcctctgaaaccaggtgactctatctttgctgctttctccaccgacatccgcttctatcagtggtcattacaagaagacacgagggctgctgcaacactcctttataggaggcacttccctgccggtgagtttgaaccggtgctcccaatggcacattgcgatggcttggtgctgctccccactaagaccaaggcctacgtcttcaatccggccacaagggatgtccttgcactgccagagagcaatcgcaacatgaggcaacgtgacatctgccccccaattggcttgggctttgatgcttcgactggcaaatataaggttgcacgatctttttatcgttcccgtgaatataatcccatggggatcgctgcaatgggtttcgaggtcttcacattaatggagaagaaagctgttggagagaaactttggtggatccaccctaccctgtgctgtattcaaagattgttacacactgcaaggggtgtctattctattacattgataggaagaatcagcaaaatcccccacaggctctgctccgtttcagccttcaagacgaaacatttggtgtcacttcgttgcttactgacacgtaccctcaagttgaagatgatgaagttacaattactgagcttggcggtcaactatgtgctactttcttttgcaatactctgcaacaagtatgtatctacatgtcaggagatgtcatggatccagattggaattgttggcatataa
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| Protein seq | MPLSLQMLKRKKQQQLVVWQTRWDERLLDSAGDSMGRTFLSMVLIVQELQSFALQQMREAMLGDNQQGVLARVHGEMHASFVWLFQDIFAGTLALMVSPMLLLANFIVHSWCSKLKRYWNPSSFLITPHIPLKPGDSIFAAFSTDIRFYQWSLQEDTRAAATLLYRRHFPAGEFEPVLPMAHCDGLVLLPTKTKAYVFNPATRDVLALPESNRNMRQRDICPPIGLGFDASTGKYKVARSFYRSREYNPMGIAAMGFEVFTLMEKKAVGEKLWWIHPTLCCIQRLLHTARGVYSITLIGRISKIPHRLCSVSAFKTKHLVSLRCLLTRTLKLKMMKLQLLSLAVNYVLLSFAILCNKYVSTCQEMSWIQIGIVGI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0013920 | OsLima_08g0013920.01 | Chr08 | 18525023 | 18528454 | + | NAM | ||
| CDS seq | atgcctttatcgctccagatgctgaagcggaagaagcagcagcagctggtggtgtggcagacgcggtgggacgagcggctactggactccgccggcgactcgatggggcgcaccttcttgtcgatggtgctcatcgtgcaggagctgcagagcttcgcgctgcagcagatgcgggaggcaatgctgggcgacaaccaacagggcgtcctggcgcgagtccatggcgagatgcacgcctccttcgtctggctcttccaggacatcttcgccggcaccctggctctcatggtctcccccatgctcctcctcgccaacttcatcgtccactcatggtgctccaagctgaaaagatactggaacccgtcttcctttctcatcacgccccatattcctctgaaaccaggtgactctatctttgctgctttctccaccgacatccgcttctatcagtggtcattacaagaagacacgagggctgctgcaacactcctttataggaggcacttccctgccggtgagtttgaaccggtgctcccaatggcacattgcgatggcttggtgctgctccccactaagaccaaggcctacgtcttcaatccggccacaagggatgtccttgcactgccagagagcaatcgcaacatgaggcaacgtgacatctgccccccaattggcttgggctttgatgcttcgactggcaaatataaggttgcacgatctttttatcgttcccgtgaatataatcccatggggatcgctgcaatgggtttcgaggtcttcacattaatggagaagaaagctgttggagagaaactttggtggatccaccctaccctgtgctgtattcaaagattgttacacactgcaaggggtgtctattctattacattgataggaagaatcagcaaaatcccccacaggctctgctccgtttcagccttcaagacgaaacatttggtgtcacttcgttgcttactgacacgtaccctcaagttgaagatgatgaagttacaattactgagcttggcggtcaactatgtgctactttcttttgcaatactctgcaacaagtatgtatctacatgtcaggagatgtcatggatccagattggaattgttggcatataa
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| Protein seq | MPLSLQMLKRKKQQQLVVWQTRWDERLLDSAGDSMGRTFLSMVLIVQELQSFALQQMREAMLGDNQQGVLARVHGEMHASFVWLFQDIFAGTLALMVSPMLLLANFIVHSWCSKLKRYWNPSSFLITPHIPLKPGDSIFAAFSTDIRFYQWSLQEDTRAAATLLYRRHFPAGEFEPVLPMAHCDGLVLLPTKTKAYVFNPATRDVLALPESNRNMRQRDICPPIGLGFDASTGKYKVARSFYRSREYNPMGIAAMGFEVFTLMEKKAVGEKLWWIHPTLCCIQRLLHTARGVYSITLIGRISKIPHRLCSVSAFKTKHLVSLRCLLTRTLKLKMMKLQLLSLAVNYVLLSFAILCNKYVSTCQEMSWIQIGIVGI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0013920 | OsLima_08g0013920.02 | Chr08 | 18526521 | 18529005 | + | IsoSeq | ||
| CDS seq | accgaaggcccaataaagtggaagcatataaccctaggcccttgtaaggtaaccctagggctaaccaccagcttcctcccaatccccaaatccaccgcgcagacacgcacgccggccggccgccggacgcgatccgctccgttgtcatcgctcgcgatacacgcagcgactaggcccagcaggtctgcacggcggtctcctccggctgctcctttcattccaggcacgccgggcacccccggttcgttcatcgcatctcaaaga
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| Protein seq | TEGPIKWKHITLGPCKVTLGLTTSFLPIPKSTAQTRTPAGRRTRSAPLSSLAIHAATRPSRSARRSPPAAPFIPGTPGTPGSFIASQR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.039129 | 0.244116 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0382600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g29390 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0382600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0014480 | RBH | 0.212620 | 2.936918 | 3.356278 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0014320 | RBH | 0.139845 | 1.014001 | 0.977033 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0014330 | RBH | 0.453947 | 4.272779 | 6.378200 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0014540 | RBH | 0.041680 | 0.121261 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0014380 | RBH | 1.831200 | 7.578071 | 7.360724 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0283400 | RBH | 3.1953795 | 3.501182 | 4.5407515 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0014410 | RBH | 0.000000 | 0.280579 | 0.715929 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0014010 | RBH | 0.106356 | 2.752036 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0013890 | RBH | 1.322704 | 9.217881 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0014650 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0014040 | RBH | 0.0 | 1.020748 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G014040 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0014200 | RBH | 0.0 | 0.0 | 0.0 |
