Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0369800 | OGI:08050260 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:17228974-17235520 | ||||||||
| Gene Symbol | OsCCD8d | ||||||||||
| DNA seq | CCAGAAAAAGAAGATACAGAGTATCTTTCATGATAAGGTGGCACCAATCTAGTTCCACAACTTGCACCCTCAAGATTGAACAATGTACATTATCTCAAATCATCACATCATTTATAAATACATCTTGGCAGTTGTCACTATAGACTATATAAAGTTAATTGTAAATGGCATACTTAAAGAATAATCCCTCTTGTCATGTTCTTTTTGTAATGAATGCTCCATGCAAACCATAGGGTACTCTTTGTGGTAATATTATCTTGGCTATAGGTTCACTCTCAAAGTTTCGGGCGTCAATGATGTGTACCTGTAACGTAAGAAAATGAAGCATTACCATACGAATTTGATCCTGCGAATAGTTTATCAATACATCTGTTATTGTTAAATCATTTGAACTTCTGATTAATAGTAGGTCCGGTCCCAATTTCTAATGTTCTGATAACTTCTTGCATGCCATATCTCAAGTCTTATATCTTTGGAGAAACAAAACGGACATTTAGTAGGTTTTACATTTAGAAAAGCAATTGCAAGTAAAATGCTGGAATCGATAATTTGTAGAATGCATTATGATTAGCAGAAAACTGATTTCCATATGTTATCGAGACATTGTAGGACACATAGAACAATAGAGTTGAAATTAATGAGGACATACTTTTGATATATTGGTTTCCTCATCATGAACAAATGAAACTATCCAGCCATCATCTTCATGCGCACCTGCTGCCTTAGGCACAAACGTTACTCCTGAGCAGAATTGATTTTTTGCTAGCTGATGATACTCTACCTTTATTAGATCTTCTCTGTCTATCTGCTTTGAGAATTCCAAATTGTTTCATGTCATTAGAAGATCATAATAGTTTCCAATTATGCATGATAGGAATAGCGAATTACTTGTTCATTATAGATCATATGATACCTTAGTAGCTATGTTTTGTTTTTCTTCAAGACAAAGTTTTGCAAAACCAATAAACTTTGGTCGAGCTGCAAGATTTAGACTGAAATTAGTTTCTATAGATCAACATTATAGTATGACAAGCTAGAACGTACTCTAATATATGGCATCTGCTTTATAGAGAATACGCAGTTATGTGGTATATTTTCTTATTTTATGAGAAGTAGTCAAATGTCCATATAAGAAACATGACAGAAGGAATACAGATTTACCCAAATTATGATATACTATTTAGATGCCTGTCTATTGCAATGGAACGGGGTGGTTTTAGTTTTTCTCCCGTATTTTTCTCTCTCTTAGTTGGTTAGTTAGGAACGTGGTTCATTTTTTCTGTTCTCCCATAATTCTTTTGGTTGGTCAGTTTTTTTTGGTACACCATTTTTTTTGGAGCGGGTTTTTCTATACGTGGGGCCTGTTTGGTAGAGCTCCAACTCCTAAATTCTGCTCCAGGAGTTGGGTCTGGAGTGGAGTTGTGGAGCAGCCTAAACCCAGCTCCACCTCTCTAGTTCATTTTGTAAGAGTGCTCCACCCAGCTCCGCTCCTATTTCTGATGGAGCTGAAACTATTTGGTTGGGCTCCAGCTCCAGGAGAGGTGGAGTTGGAGCTGGAGCTATGCCAAACAGGTCCGTGGGATGGGAGTGGGAAGGGAAGGAGGATGTATTTGTGTAATAGCAGAGATAAGCAATTGCAATTCTAGTTCTAGAGTCCATCTGTTCGGACCATAGTATCAGCAATTCTGTAATTGCAGTTCAATTGTTTAGTACTAAGGAGCAACTTGATCTCCCTAAACTACAATTGCTCAATAGCATTTGTAGTTTAAGTAACCTACTGATGAAATCAGTTTTGAAGGATAAATGAAGGCTTGCAAGCAGAATGAACATTTTATTATTCAGGCATGTGTACCTTTTCTTTAATTATTCTGAAGGTACCTTTTCTTTCACATGTGTTTTGGATGAAGGAAAAAACAATTATCAGAGTAGTATTACTTTTTGATGCACTATATGGTAAAAGCAATTTGAGAGCTTACCAATCTTGTGGGTATTGTCCGCTCAATTTTCTTGTTCAACTCAAAGTGTGTATATGTATGAAAAAAAATGAAAATGAATATTTAGCAATACCTATTTCATGACCACCTCCGAAACAAGCTGAACAATCCGCCACTTGTACATATGCGTACCTATGGCGTAGGCCAGAAAATTTATCATTGATAACTGGGAATTCCAAGGCAACATCTAAGCTAGTTAAGTATTTGCCTGCAACAGTCCTTGTTTTTAGGTTCAATCTCCATTCATACAAGCGAGAAAAGTTCTCTTCATTTGGTTCTTGACTGGAAGTATCCATAACCATGTTCTTCTGCCTTGGACCCATAATCGCAGAACTTGGTACATGAAATCCCCTTACTACAACCTAATAATAATCAGGATAGCAAATTAGAGTATGCAAGGATATCCCACAAACAGTGAAATACACATAGATTGGACATACAATGGAACAATTCACAAGTGACAACTTTTAGGAAGGTTTACAATTTTGTATATATGTAAAAGATTTGAGTGCTTGATGTGGGTGAGAAATTGACATTGAGTTTCTGCACTCCTTTAAAAGAGAGTAGTGGTGGTGGTGAGTGGTGAATCTGCCACCACCACCCCACCACCAAACTCTCCAAATTTCTGACGTGTGGGACCACTGTCTACCCCCTCTCCAAATAGTTGCATAGAGTCTAAAGTACAAGACAATTGAGTCCGCTTGAAACTTTTTACGGCTAAAATATAAATCTATACTCCTTTAAAAGATAGTAATTGTGGTGATGAGTCATGAATCTGCCACCACCACCCCACCACCAAATTCCCCAAATTTCTGATATGTGGGACCACTGTCCACTAGTTGTGTAGAGTCTAAGGTATAAGTCGATTGAGTCCGCTTGAAATATTTTACGGCTAAAATATAAAAAGATGAAAAATCTCTCACTAATTCTAAAATTAAGCTCTAAAATTCAAAATAGATTTCTTCTTTGAAATGTGCCGATGTGATATTTTTAATTCTGTAACAACACACGGGCATTTTGCTAGTCACAAGAGAAACAGGTAGTCGTCGAGCTGCTGCTTTAGCTATTTGATCATCTGACTATCTGAGTTACTCAACTATTGCTTATGCTGCTTCCTTTGAACACACATTTACTGTAGTTCAAAATTGCAGTGGACCTGTGTCTAACTAAGGTAGATCTGTAGAAGTATTTAGAGATAACATAGATGCCTACCTCATGACCTTCCTCGAAGCAATTGACAAGATGGAATGTGCAGAATGGTTCTACATAAAACCATATTACTGAGTCTGCATCACCGTAATGGGGCATAACCCCAATTCTTGAATAGCTTTCCTCTTCAAACTCAAGCACTCTATATGAGGGATGAAGAAGGATAAATTCGATTTGTGAGAATAATTTTGGATTTTTGGTATTAGCTATACCAAGTACTTACGGAGCCCCTCTTAGCATCCTAGTTGGGTTGAGGGTAAGTGGTGAATCTATGATGATGTTGTACCTGCAATCATTGAGGATGTTAGATTTCACTAATTTTTCTAATTGGTTTGCTATTTCTAGAAAATTCATTACATCCTATTAAAGCTATTGTGTTCATGCATATTTGAAAGTTTTTAGGTCCACTTTACTTTTATATAAGAAAAGTGGAGCTTCAAGAGAACTTGACTTTAATAGAACTATTTTGACTTTAATGAAGTTATAGCTTATTTTATGTGGCATAGTAAAAAATGAATATATTATTTTTTTGGTTATTCTGTACAGTTCAATAGAAAACTGCTAGACAAATATTGACTGAGCTGCTGACTAATTGCAAGCATTGAATTAGGCACAGTTAGAATGTGAGTTCTCAATCCTACAGTTAGTAGCAGAGCAACTCAGCTGGTTGCTGCCATAACTGGGATCCATGGATTTGGTTATTCCATATATATCATTTAGGGATTAATAGTGCTCTGTGTTTCAAATTCTAATAGATTTTTTATGGAGTCCATGTCCATCCCATGTGAGTTAAGACATTGTTGTTTTATTTCTGTGTAATGTTTAAGAAATTTGTAAATGACAGTAAACCAGACAAAATTAGTGTACTTCATATCATGAAAAAGAAACGAATATGATGGTTTTCTACTAGCTTCCAGTTGGTTCTAATCTAGTTCATAAGACACCATTCCTCTGTTCTTCACAATAAAATTGCTATTTTTTACTTAAAAATTCCCTGTTGAAAAAAAATAAAAATTAAGAATCCTCAAGAAGCGACCAAGATTGATTGTTTTCTTGTGCATCAGTCTATGTGAAATGTGCTGTTTAGTATCTTCCATTTCTTGAAATTAAATAAATATACTATTTGAAATAAGAGCAATTCTTGAAATTAAATAAATATACTATTTGAAATAAGAGCAAAATTTTACATGCATCTAAATATCTAATGAAATCAGAAGAGCAGCCATAAAAACAAATATAGCTAGCTGTAGGCAAGAAACTTACGTCCCCGTGACCCCAATTTCATGACAATATGTGCATCTGTCTAGCTTGAGACCAACCTTTTGTTTAAGTTTTTCTCCATCCTCTGTGATGTTTATGAAGTTAAGCATATGACCCCATTTTTATTCAGGAGATGTAGCAGAAGACAATGGAATTATGAAAGTAGATAACCTGAGATTATGCCAACTGTTAGGAAAGGCTGTACCGCATTGATCCCGAAAATGACCATCTCTTTTGACCCAGGGATTACCTGTTACCGTGGACATGATGCATTGCATAGCTAAAACATGACAAAAGAAAGCTAACAGATGTACAAATGAAACAATGGAGCACTAGTGGCTTTAACTACAGTAGTTGAACTGTTATTATTGGAAAACTTGGAAAGTTCAGATGAATGAAACTTATAGGGACTGAATTTTGGCTGTATCTACCTTCAGTTTGATTTGTATATTTTTGCTTGTCATTATTTAAATGATGTGGTGGCCATCTGTTGTGGTGGAAACATGTTTAAAAGTTACAGATTTCCATGGATATTTCTGCAATAATCTTTAGCTATCTTCTTAGTTTTGAAGCAGAGTAATGCTGTACTAATTTACCAACAGAAAACAATCTAACTGTTTCCATGTAAGAATTAACTTATAGACAGTATTCATAGATGCTATGCTTGGTTCTGGTGTTCATCTCCAATGTCAAATCGGCTATGTGATGCTTGTCAGTTAATCTAAGCACATGCATTGCATTCTCATTACTTTATTTATGGTCATGGTACTCCCTATTTACGGGCCATAAAAATCTGATGTGTAAGCTATTTAGCTTAACATTTTGAAGAACTAGGCAAAAGGACCACCGACCTTGGGGTGTGCTGTAAATGGCAACTTCCATTCACCACCGAGATGCCAGCTGCCTAGTGTACTGAGGTTATGCAAGTCAACCTCGTGGGGAACATCATCCTCTGATGCTGCATAAACTCTCCCTGCATGCTCAAACACGCTAGTGTTGCTCATGCTTTTCATTACCTTTCGGAATCTCAGCTGCACATACTCAACAGTCAACATATAGCATTTCCAAAATGTTTGCGACAATCCCAAAAAAATTACAGAAGAAATGCGATGTAGTAATAGCAGCAGGCACCATACTGTGTTAAGAACAGAGGCGATGAGCATGGCGGGAGGGTTCCCATCGGTCATAGGGAGAAAGCATGGTTTCTGACGTTCTTTCTCAATCCTAAATGTTTCAGATTGCACGTAGCGGTTATTGTACGAGATTGACCATGTGCTGTTATTACTTTTGCAGAAGTATACAGCATGGAGCATGCCTTCTCCTTCCACCCAGATGTTATGGGACTGCCCGAAAATGGAACTAACAGATTGGAGGCCTCCATAGAGAGGGTTTCCGCCTGCATTCCACAATCATCAGAGCATCTGGGTTTGTTCCATGACATTTTGTGAAAAAAAAAGGAAATCTTATTCGGTCAAACGTATTACTAATAAGCTTGCATATGTGAATTACCATTTCTTATGTAGACACCCTCAGGAAAATCTGCTGGAATCTCTCCTTCAATCTCTATAACCCGTGTGATCTCCCCGATCTCGTCGACTGGTGCAAAATTGCTCTATAGAAGTGCCAACACAAGGTATGCATATAATATTTTGCCTTCTGCTCGTTTTTCAGCTCCTTGTCAGCAAGTTAACTGGAACAGAATCGAACCATTTGTATTTACCTCAGTGGGACGCAAAGGTTGACATTTGAATGTGAAGGTGTGATCAACAAATGAATCCAGCAGCTGTTGGTAAGTACTGTTCATGGCATTTGATGCCTCTCCCAGTTTGGAGCTTAGATGCACCTGAATCTCCCTGAAATACGGCTGAAACATGAAACAAAGCAGAGTATTTGGTTTACATTTCTCACTCACTGAAGGATCACACATCTATTGCTGTGTGCAAGATTGCCAACCTTTCCAGTGGATGCTTTCTGATGAGATAGACGAGCAGCTTTAGGGGAGATGGATGACCTGGAGCTGGAGATGCATACGCGTGGTTGAAGGGTATACATGGATGGCACCGTTTTTGGTCTCCCTGTATGCA
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| CDS seq | CATACAGGGAGACCAAAAACGGTGCCATCCATGTATACCCTTCAACCACGCGTATGCATCTCCAGCTCCAGGTCATCCATCTCCCCTAAAGCTGCTCGTCTATCTCATCAGAAAGCATCCACTGGAAAGCCGTATTTCAGGGAGATTCAGGTGCATCTAAGCTCCAAACTGGGAGAGGCATCAAATGCCATGAACAGTACTTACCAACAGCTGCTGGATTCATTTGTTGATCACACCTTCACATTCAAATGTCAACCTTTGCGTCCCACTGAGAGCAATTTTGCACCAGTCGACGAGATCGGGGAGATCACACGGGTTATAGAGATTGAAGGAGAGATTCCAGCAGATTTTCCTGAGGGTGTCTACATAAGAAATGGCGGAAACCCTCTCTATGGAGGCCTCCAATCTGTTAGTTCCATTTTCGGGCAGTCCCATAACATCTGGGTGGAAGGAGAAGGCATGCTCCATGCTGTATACTTCTGCAAAAGTAATAACAGCACATGGTCAATCTCGTACAATAACCGCTACGTGCAATCTGAAACATTTAGGATTGAGAAAGAACGTCAGAAACCATGCTTTCTCCCTATGACCGATGGGAACCCTCCCGCCATGCTCATCGCCTCTGTTCTTAACACAGTATGGTGCCTGCTGCTATTACTACATCGCATTTCTTCTGTAATTTTTTTGGGATTGTCGCAAACATTTTGGAAATGCTATATGTTGACTGTTGAGTATGTGCAGCTGAGATTCCGAAAGGTAATGAAAAGCATGAGCAACACTAGCGTGTTTGAGCATGCAGGGAGAGTTTATGCAGCATCAGAGGATGATGTTCCCCACGAGGTTGACTTGCATAACCTCAGTACACTAGGCAGCTGGCATCTCGGTGGTGAATGGAAGTTGCCATTTACAGCACACCCCAAGGTAATCCCTGGGTCAAAAGAGATGGTCATTTTCGGGATCAATGCGGTACAGCCTTTCCTAACAGTTGGCATAATCTCAGAGGATGGAGAAAAACTTAAACAAAAGGTTGGTCTCAAGCTAGACAGATGCACATATTGTCATGAAATTGGGGTCACGGGGACGTACAACATCATCATAGATTCACCACTTACCCTCAACCCAACTAGGATGCTAAGAGGGGCTCCGTAA
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| Protein seq | HTGRPKTVPSMYTLQPRVCISSSRSSISPKAARLSHQKASTGKPYFREIQVHLSSKLGEASNAMNSTYQQLLDSFVDHTFTFKCQPLRPTESNFAPVDEIGEITRVIEIEGEIPADFPEGVYIRNGGNPLYGGLQSVSSIFGQSHNIWVEGEGMLHAVYFCKSNNSTWSISYNNRYVQSETFRIEKERQKPCFLPMTDGNPPAMLIASVLNTVWCLLLLLHRISSVIFLGLSQTFWKCYMLTVEYVQLRFRKVMKSMSNTSVFEHAGRVYAASEDDVPHEVDLHNLSTLGSWHLGGEWKLPFTAHPKVIPGSKEMVIFGINAVQPFLTVGIISEDGEKLKQKVGLKLDRCTYCHEIGVTGTYNIIIDSPLTLNPTRMLRGAP |
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| Function | 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic [UniProtKB/Swiss-Prot:Q5MBR6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0369800 | OsNip_08t0369800-01 | Chr08 | 17228974 | 17235520 | - | RAP2018-11-26 | ||
| CDS seq | CATACAGGGAGACCAAAAACGGTGCCATCCATGTATACCCTTCAACCACGCGTATGCATCTCCAGCTCCAGGTCATCCATCTCCCCTAAAGCTGCTCGTCTATCTCATCAGAAAGCATCCACTGGAAAGCCGTATTTCAGGGAGATTCAGGTGCATCTAAGCTCCAAACTGGGAGAGGCATCAAATGCCATGAACAGTACTTACCAACAGCTGCTGGATTCATTTGTTGATCACACCTTCACATTCAAATGTCAACCTTTGCGTCCCACTGAGAGCAATTTTGCACCAGTCGACGAGATCGGGGAGATCACACGGGTTATAGAGATTGAAGGAGAGATTCCAGCAGATTTTCCTGAGGGTGTCTACATAAGAAATGGCGGAAACCCTCTCTATGGAGGCCTCCAATCTGTTAGTTCCATTTTCGGGCAGTCCCATAACATCTGGGTGGAAGGAGAAGGCATGCTCCATGCTGTATACTTCTGCAAAAGTAATAACAGCACATGGTCAATCTCGTACAATAACCGCTACGTGCAATCTGAAACATTTAGGATTGAGAAAGAACGTCAGAAACCATGCTTTCTCCCTATGACCGATGGGAACCCTCCCGCCATGCTCATCGCCTCTGTTCTTAACACAGTATGGTGCCTGCTGCTATTACTACATCGCATTTCTTCTGTAATTTTTTTGGGATTGTCGCAAACATTTTGGAAATGCTATATGTTGACTGTTGAGTATGTGCAGCTGAGATTCCGAAAGGTAATGAAAAGCATGAGCAACACTAGCGTGTTTGAGCATGCAGGGAGAGTTTATGCAGCATCAGAGGATGATGTTCCCCACGAGGTTGACTTGCATAACCTCAGTACACTAGGCAGCTGGCATCTCGGTGGTGAATGGAAGTTGCCATTTACAGCACACCCCAAGGTAATCCCTGGGTCAAAAGAGATGGTCATTTTCGGGATCAATGCGGTACAGCCTTTCCTAACAGTTGGCATAATCTCAGAGGATGGAGAAAAACTTAAACAAAAGGTTGGTCTCAAGCTAGACAGATGCACATATTGTCATGAAATTGGGGTCACGGGGACGTACAACATCATCATAGATTCACCACTTACCCTCAACCCAACTAGGATGCTAAGAGGGGCTCCGTAA
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| Protein seq | HTGRPKTVPSMYTLQPRVCISSSRSSISPKAARLSHQKASTGKPYFREIQVHLSSKLGEASNAMNSTYQQLLDSFVDHTFTFKCQPLRPTESNFAPVDEIGEITRVIEIEGEIPADFPEGVYIRNGGNPLYGGLQSVSSIFGQSHNIWVEGEGMLHAVYFCKSNNSTWSISYNNRYVQSETFRIEKERQKPCFLPMTDGNPPAMLIASVLNTVWCLLLLLHRISSVIFLGLSQTFWKCYMLTVEYVQLRFRKVMKSMSNTSVFEHAGRVYAASEDDVPHEVDLHNLSTLGSWHLGGEWKLPFTAHPKVIPGSKEMVIFGINAVQPFLTVGIISEDGEKLKQKVGLKLDRCTYCHEIGVTGTYNIIIDSPLTLNPTRMLRGAP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.048684 | 0.000000 | 0.120845 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0321200 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g28240 | RBH | 0.044311 | 0.000000 | 0.037960 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0369800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0013900 | RBH | 0.000000 | 0.0 | 0.399437 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0013800 | RBH | 0.000000 | 0.000000 | 0.345255 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0013770 | RBH | 0.000000 | 0.000000 | 1.176901 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0014070 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0013740 | RBH | 0.0 | 1.213443 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0268600 | RBH | 0.190958 | 0.9258345 | 0.3470125 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0013780 | RBH | 0.0 | 0.0 | 0.101416 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0296200 | SBH | 1.559098 | 0.1948505 | 0.071804 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0013280 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0013380 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0013310 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0014080 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0013410 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G013510 | RBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0013610 | SBH | 0.0 | 0.0 | 0.0 |
