Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0344800 | OGI:08044460 | 1/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:15610010-15611929 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAAAAAAATACTCAGAATGATACGCATCGCATTGTTTGTTAGCTGATCCAGCACTGAAATGAATACCAGAAGACTAATGATGTCATATAATTACAATTAAGTCAATTGCTCACTACTACAGCAATAATAAGGGCCATAATAAGGTTTATATCTTCAACAAAAACTACCAAAACATCATCTATGCCTTGATCCATATGCAGTTGTAGATAATCTGGAAGAGAAAGAAGCCATCAGAAATTTATATTTCAGAAATAACATTGAAAGATTACAAGTTGAATATTATTATTTCTATAAGATATGACTAGCATGAGTTAGTGGACACACTAGTAAGAATGAAGAATGAATCCATCCATCCCCACTATTCAACTAAATATCTATACTACTATATACAACCACAAGGACTTTCAAGAAATGGAAAAAAAAAAGAGAGGAAGAAAACAAGGTTGAGAGCCCCAAAATTCTGCAGCCAGAATCAACATAGTAGGATACAACATATCATATCAAACAATTTTGCAAGAGAAAGAAAAGATTTTTCTCTATTTCTACCAAGTACTCTACTAACTCTTCCTGAAAAAAAAGTACTCTACTAACTGCTGACCTAATTAGCTCATGGAAGCTCAAATCATGGACTAGAGAACACCCTGAAGCCCTGAACTAATCTGAACCCTTTTGAGTACAAAACAAAACATTTGGCCTGAGCAGCCTCATCAAGAGGAGAAATTGAGCGGATTGATCTGAGCTGAGCACATCAAACAGAAAGAAAAGATTCAGAGACAGAGAGTTAGAGCTGAAGATGTTACCTGGCAGAGGATGACAGAGTCCTGGTTGGGGCCTTTTTTGCCCCTCTGGGAGAAGAGAGAGGCCACCTTCCTTGCTTATCCTTCACATACACAATGCTCTCATCTATCTCCTGAACATGCTCTAGCTGCTCAAATAAGAATATATACAAGTAAGGATACAACTAATAGATATAAAAGGCATTGCAAGGTGTTACAAATTCCGCCTAACATTTCACCAACTGATGAACAAAAAACAACATTAAGTTACTGAGCACAGGGACCCCACCATTGTAAAAAAAAAACAGCCATCATACCAAACCTTCTTCACAAAACATCATATGGTCAGTACTCAGTACGAACCTAGATCAAAGAAAATTTGGCACAAATATTAGTAATACTGGTGGGCACTCAGACAAATTAATCTAGATTTTGTGACTAATCAAACAATATAAAATGAAAACACATCTACAATTACTATTTATATGGCACAGACCACAAAGTCTGAGACGAAATACAAGGCGTGAGATATTATACCTTTAATCCCCTTGTTTTTTGGCTCTATGTAGCCAATCTTTTGCACAAACAAGTGCCTCGAGCATCTCTGGTGTCAATGAGCTTCTTGTGTCTCCAAGAATCCTTCCTCCACTGCTGAAAGCGGACTCTGAGGGCACGGTGCTAAGTGGAATTGCAAGAAAGTCTCGAGCCATAATTGCCAACACAGGAAACTTTTTGGAATTTTTCTTCCACCATGCCAAAACATCAAAATCCTCACTATCATCCTCACATACTTCTTCTAAATATGTATCAATCTCTGACTTCTGAGTACGTGCAACCTTCCGGTTTGACTTGAAGAGGGTGAATTCATGCTCTAGCTTTCTTTTTCCCAAAACAGGTGAGCCTACAACACTAACTCTCTCACTAGACTGTGACATGTAGGATACACCCCTTCTTCTTGCAATTCCTTCATATACATGAAAGTATGATTTCATCTCCTCTATAATAGAGTCCACTTTACTTTCAACATTAGAACCATGGGGAGACACCTTCTCATAAAAGAAATCCAAATAGTCTCTTTTCCTTCTTGGATCTAACACAGTGGTAATGACAAGTGCCAAATTGAAGTTGTTTGCCAATTTTTCAT
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| CDS seq | GAAAAATTGGCAAACAACTTCAATTTGGCACTTGTCATTACCACTGTGTTAGATCCAAGAAGGAAAAGAGACTATTTGGATTTCTTTTATGAGAAGGTGTCTCCCCATGGTTCTAATGTTGAAAGTAAAGTGGACTCTATTATAGAGGAGATGAAATCATACTTTCATGTATATGAAGGAATTGCAAGAAGAAGGGGTGTATCCTACATGTCACAGTCTAGTGAGAGAGTTAGTGTTGTAGGCTCACCTGTTTTGGGAAAAAGAAAGCTAGAGCATGAATTCACCCTCTTCAAGTCAAACCGGAAGGTTGCACGTACTCAGAAGTCAGAGATTGATACATATTTAGAAGAAGTATGTGAGGATGATAGTGAGGATTTTGATGTTTTGGCATGGTGGAAGAAAAATTCCAAAAAGTTTCCTGTGTTGGCAATTATGGCTCGAGACTTTCTTGCAATTCCACTTAGCACCGTGCCCTCAGAGTCCGCTTTCAGCAGTGGAGGAAGGATTCTTGGAGACACAAGAAGCTCATTGACACCAGAGATGCTCGAGGCACTTGTTTGTGCAAAAGATTGGCTACATAGAGCCAAAAAACAAGGGGATTAA
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| Protein seq | EKLANNFNLALVITTVLDPRRKRDYLDFFYEKVSPHGSNVESKVDSIIEEMKSYFHVYEGIARRRGVSYMSQSSERVSVVGSPVLGKRKLEHEFTLFKSNRKVARTQKSEIDTYLEEVCEDDSEDFDVLAWWKKNSKKFPVLAIMARDFLAIPLSTVPSESAFSSGGRILGDTRSSLTPEMLEALVCAKDWLHRAKKQGD |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0344800 | OsNip_08t0344800-00 | Chr08 | 15610010 | 15611929 | - | RAP2018-11-26 | ||
| CDS seq | GAAAAATTGGCAAACAACTTCAATTTGGCACTTGTCATTACCACTGTGTTAGATCCAAGAAGGAAAAGAGACTATTTGGATTTCTTTTATGAGAAGGTGTCTCCCCATGGTTCTAATGTTGAAAGTAAAGTGGACTCTATTATAGAGGAGATGAAATCATACTTTCATGTATATGAAGGAATTGCAAGAAGAAGGGGTGTATCCTACATGTCACAGTCTAGTGAGAGAGTTAGTGTTGTAGGCTCACCTGTTTTGGGAAAAAGAAAGCTAGAGCATGAATTCACCCTCTTCAAGTCAAACCGGAAGGTTGCACGTACTCAGAAGTCAGAGATTGATACATATTTAGAAGAAGTATGTGAGGATGATAGTGAGGATTTTGATGTTTTGGCATGGTGGAAGAAAAATTCCAAAAAGTTTCCTGTGTTGGCAATTATGGCTCGAGACTTTCTTGCAATTCCACTTAGCACCGTGCCCTCAGAGTCCGCTTTCAGCAGTGGAGGAAGGATTCTTGGAGACACAAGAAGCTCATTGACACCAGAGATGCTCGAGGCACTTGTTTGTGCAAAAGATTGGCTACATAGAGCCAAAAAACAAGGGGATTAA
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| Protein seq | EKLANNFNLALVITTVLDPRRKRDYLDFFYEKVSPHGSNVESKVDSIIEEMKSYFHVYEGIARRRGVSYMSQSSERVSVVGSPVLGKRKLEHEFTLFKSNRKVARTQKSEIDTYLEEVCEDDSEDFDVLAWWKKNSKKFPVLAIMARDFLAIPLSTVPSESAFSSGGRILGDTRSSLTPEMLEALVCAKDWLHRAKKQGD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0564533 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g25660 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0344800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006400 | SBH | 0.110099 | 4.927837 | 1.164720 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0005500 | SBH | 0.361978 | 0.342623 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0001630 | SBH | 0.0 | 3.425688 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0345500 | SBH | 0.0062705 | 0.145457 | 0.1712575 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0001520 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0240800 | RBH | 0 | 0.087685 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0001610 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0001700 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0005140 | SBH | 0.947337 | 7.223179 | 6.845451 |
