Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0330800 | OGI:08041870 | 14/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:14599906-14600802 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAATCATTTCCCCTCCCCCCTCTCTCTCTCAAAATGACAGCGTCAGCGGTGCCTCTCCCTCTCCGCCGCAACGGCGCCGCTCCCCTTCTCCCTCCCCCACCGGTGGCGCTGCTCCCCCTCCCAGCACCGGTGGCGCCGCTCCATCTCCCCCCTCCCTCCCGTTTCGTTCACACGGCGCTGCATCGGCGAGTGCTCGACGGGGGTAAGTCAGCGACGACGACCACCCTCACTTCCCCTCTCCCCATCGGCCTCGATGGTGGGGCTACGGGGCGGGCCATCCTTCTCTCTTTTTCTCATCTGCCTCCGAGCAGGAGGAGAGCGCCGGAGGATGGGGCGCCGGGGTAGAGGGAGAGGGTGCCGACGCGGTTGGGGAGGCGGTGAGTGTGGCCGTGCCTGGCGGGCGTGACCACGATAGGAGCGCAGTGGACGGCGATGGCGACGAGCTAAGATCAACCGGATCGGGTGACATTAAGCTTGCCCATTTATGTGATTTTTTCCTCTCCTTTTTTTCTTTTTTTCTAGGGTTCTCGATGCGTATATCTGTTCGAATTGATTCTTTTTTCACGTAGATTTACCCGTTTAAATTTCTATGGAGCTCCCCAATTGAATTTCGTACCGATCTTTGATTTGATTTTGTGTGTTTTCTATCGCACATGATTGGCATATAAAGTGATGACGGAGGAAACATTAGCGCCATGACGGATGAAAACGCGGACACAGAGATGTGACGATCGGAAAGTTACGAATTTTTTAATTAGTTAAGATTAGTGTTTTTTTATCTTTAGGAAATTTGTATCGTGTCCAATAAAAATTAGTATAAACATGTGGATATAAATATATATACCCGGGATTTTGTAATCTATCTCTCGATCGTTATACAATTTTCGGCGCATTGCC
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| CDS seq | ATGACAGCGTCAGCGGTGCCTCTCCCTCTCCGCCGCAACGGCGCCGCTCCCCTTCTCCCTCCCCCACCGGTGGCGCTGCTCCCCCTCCCAGCACCGGTGGCGCCGCTCCATCTCCCCCCTCCCTCCCGTTTCGTTCACACGGCGCTGCATCGGCGAGTGCTCGACGGGGGTAAGTCAGCGACGACGACCACCCTCACTTCCCCTCTCCCCATCGGCCTCGATGGTGGGGCTACGGGGCGGGCCATCCTTCTCTCTTTTTCTCATCTGCCTCCGAGCAGGAGGAGAGCGCCGGAGGATGGGGCGCCGGGGTAG |
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| Protein seq | MTASAVPLPLRRNGAAPLLPPPPVALLPLPAPVAPLHLPPPSRFVHTALHRRVLDGGKSATTTTLTSPLPIGLDGGATGRAILLSFSHLPPSRRRAPEDGAPG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0330800 | OsNip_08t0330800-01 | Chr08 | 14599906 | 14600802 | + | RAP2018-11-26 | ||
| CDS seq | ATGACAGCGTCAGCGGTGCCTCTCCCTCTCCGCCGCAACGGCGCCGCTCCCCTTCTCCCTCCCCCACCGGTGGCGCTGCTCCCCCTCCCAGCACCGGTGGCGCCGCTCCATCTCCCCCCTCCCTCCCGTTTCGTTCACACGGCGCTGCATCGGCGAGTGCTCGACGGGGGTAAGTCAGCGACGACGACCACCCTCACTTCCCCTCTCCCCATCGGCCTCGATGGTGGGGCTACGGGGCGGGCCATCCTTCTCTCTTTTTCTCATCTGCCTCCGAGCAGGAGGAGAGCGCCGGAGGATGGGGCGCCGGGGTAG
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| Protein seq | MTASAVPLPLRRNGAAPLLPPPPVALLPLPAPVAPLHLPPPSRFVHTALHRRVLDGGKSATTTTLTSPLPIGLDGGATGRAILLSFSHLPPSRRRAPEDGAPG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.807522 | 1.116501 | 1.229146 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g24182 | RBH | 0.545491 | 0.743481 | 0.318315 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0330800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0011700 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0011740 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0011240 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0011330 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0011480 | SBH | 0.0 | 0.0 | 0.0 |
