Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0011240 | OGI:08041870 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:14050814-14056299 | ||||||||
| Gene Symbol | Os_F0451 | ||||||||||
| DNA seq | atgacagcgtcagcggtgcctctccctctccgccgcaacggcgccgctccccttctccctcccccaccggtggcgctgctccccctcccagcaccggtggcgccgctccatctcccccctccctcccgtttcgttcacacggcgctgcatcggcgagtgctcgacgggggtaagtcagcgacgacgaccaccctcacttcccctctccccatcggcctcgatggtggggctacggcgcgggccatccttctctctttttctcatctgcctccgagcaggaggagagcgccggaggatggggcgccggggtagagggagagggtgccgacgtggttggggaggcggtgagtgtggccgtgcctggcgggcgtgaccacgataggagcgcagtggacggtgatggcgacgagctcagatcaaccggatcgggtgacattaagcttgcccatttatgtgattttttcctctcctttttttcTttttttttTAGGGTTCTCGATGCGTATATCTGTTCGAATTGATTCTTTTTTTACGTAGATTTACCCGTTTAAATTTCTATGGAGCTCCCCAATTGAATTTCGTACCGATCTTTGATTTGATTTTGTGTGTTTTCTATCGCACATGATTGGCATATAAAGTGATGACGGAGGAAACATTAGCGCCATGACGGATGAAAACGCGGACACAGAGATGTGACGATCGGAAAGTTACGAATTTTTTAATTAGTTAAGATTAGTGTTTTTTTATCTTTAGGAAATTTGTATCGTGTCCAATAAAAATTAGTATTaaacatgtggatataaatatatatacccgggattttgtaatctatctctcgatcgttatacaattttcggctcattgccaatttgccatctcctattccagcgagtcattcgtttcgatttatcaatctaggaaacaggaaagtacatccgtcccccatggccgccgccaccagtgaccacctctccggcctccccgacgacgtcctccggcacatcatctccttgctctccgccaaggaaggcggcgccaccgccgtgctctcgcggcggtggcgcccgctgtggcgccaggctggcaccgtcaacctggacacggagccctacttggacccggcggcgtacagaggcaacaacttcccggagcacaggcggagcgcgttcgtcgaccacgccctggccgccctcgccgcgtgcgagagcccgaggatcctgagccttcgcctcgcgtcggaggagatcgagggaggcgcggccgaggagaagtgtgccggtgtggtcgacgccgtccaagacgccccggcggcggcgcgcgtcgaggagctccgcgtccgctgcgacgtctcgtggttctgcaggtacggcagctgcgagagcgggagctccggcggaacgtggcggctgcagctcggatccctgccctgcgccgccgccacgctccgcgtgctgcacgccaacgacgtcggcgtcgaacgccttggcgacggtggcggcgtcggcgtcgttctcccgctcctggaggagatgcggctggtagaagccaccgtgtcaccggacacgctccagcgcgtgatcgacgccgcgccgaggctcgccaacctgtggctcgacggaatcatcttcacgagcaacgacggcagccggagactctacctcgccgacggcttccgcctccagctccgaggcccggcgctcaccgagctagccctcatcgagtactacagtagagacgcggcATCGAGCTCGACGCGCCCCGCCTGCGCTCCTTCGTATGTCAAGGCTCCTTCCCGGGGCACTACTCACTGACATCGCCGGCGCCGGACTTCGCATCCGCCGACCTTCACTTCCACGACCACCGGAGCTATGGCGACAAAGATCCCAACAACTTGACCGTACCCTTGTGGAGCTGCCTCCGGCACCTGCACGGCGTGAGGGTCTTGAAGCTGCAGCTAGACTTCTATGCAGAGTACATCGCCATGGAAGCCGACGCTTGCGACGGCGGCGGCGTCGTCCCCGCCACGTTCCCTAACCTTGAGTATCTCGAGCTTGACGCCCATTGCAAGGATGATCACGACATGGCCACAGAATTGACAGTAGCAAGCGGttctccgatggtgccctgccatccgtgacctacggctcaggttgtcagtagccgatgctgaaggccgcgtcaatgtctacaacagcaaacggcacatgatccatcaggcgagattgatgaggaacagctttgaacaggatgtgcaaaccaaaattgatgttgatgtgaccaacattacaacatcgtgatcgccgtaggaaactagaacaccagacagattacgtctgtgctagtaggttcagttccataatcatctaataatcggagttgataattactttattagtgtattttttttTGgttttgtatttttggtgcagccattgagattacattagaccatggttaggatcagccagcagttcatttgttacatcatttttacagaatgtagttcgattgctccaaagcttttcataatccctccattacggggtggacacacagttttggacagacaattggacagggaaaggttgcttcgcctggaggtggccggtgttgttttcccatgtgagccgtgccaagctgacagtagctgatgCcctgattgctaacagatggattcgccgattacaaggtgccttgtccaatgaagctctgggtgaattcttccaactttgggatgaagttcgcgacgtgtcactgcagcagatggctgacacgatcaaatggaagttgactgctgatggtaatttctcagtggcctcggcgtatgatctaTttttcatagcgacagaggattgttccaacggggacacgctgtggcactccagggtgccgtcgtgtgttcgcttcttcatgtggattgcactcaagggccgctgtctcacggcggacaacttggcgaagagaaactggccgcatgacgccatttgctccctatgccaaCGcgagaacgaagactgccatcatttgcttgtgtcctgtgattatacggcggcggtttggcgcaagctgagacgttggtgcaacattaacattgcaatccctgcggaatatggcaggccgcttgcagattggtggatcgcgacaagatggcgttttcagaacacgtataggacggatttcgatagtctgttcatgctaatttgttggcttatctggagagagcgaaatacaaggatctttcaacacatcgccaagtcagttgaccggctagcggatgacatcaacgaggaaatcgcaatttggagggcagcatggatttttttcccaggctagcgagtagtcccgattagaggcgggacttgcaccattttttccttttctttccgggcttaagtttgcttaagaccggcgcggcatctttcatgtcgttgtaattaaaactttatttcccccaatcttaatgaaattggccagcctacctttggccgtcctggcaaaaaaaataatccctccattctagacgaggccttactcaacttatttaagtagcatcacatactactatcctctttgttttattttataagacattttaatatttttctaagtcaaacttacttaactcttttttaaggttttctgtgttgagacaccaatttcaaaaacttttgggtctattttgatctcagataaacctcatctcTttctcgtaagattagtctaactagtatcagtatacgtgatgcctgcacttcttttttttgttctgaaattaggcataatgagtgcctgatatattaaaaaacagcattcttatatttacaaggattttttatatatacatattcactacttagcatgttaattccgtttacctacctgttacatgcattgttcagtagcaagaaagttaagaaagaggtccatccttcttcccagtacattcatgagcacaatgcacttaataaaggtgatgttactgatgttaaatatattgttttactgaccttcatcttacacctgtttgctatacatctaacaccgctatgcacgcctagtataaactaacaaaatcatgacattacttcatactgttccccaaaccccatcagaaaacaggcttcagacgtctcctgcatatatgtaaggacattatgtttacagaaggcttgaaacttttcaatgcgctttgaatctgattatgtgggctctctgaatctgattttcatattttctttgaatgccctttcagcaaactaacttggttgatctctgaaattaatctgcatacatttatctaggaggactcttgagccgtgttactttgctaaatgaaatagaagacacaatcttatggtaaaggaataatgtggccacatattcagctaaaagtgcttatctctttcaatttattggttctcagcaagacaagattttcctgttgaactgggaggcgtcgacgcttccaaaacaaaaattcttaggttggctcattctacaccacaaggttctaacagccaaaaacatgctgatttgacactgggagtgtgactggatttaccccttatgccccttatgtagaggagcatttgaagatactgaccacttgtttcaacaatgtgatttttttaaaagaaacgtggaatcttgtccctgctgctcaaggtattcagaataaccagacttattgctccctaaaagaatggatgtcatgtatcatgcagaatgaaaacaagacagaagcaaggagaaaggtgggtgttcttgtaaagacatggtggcatatttggctccaaaggaacgcaaagatcttcagaggagaagaaccggatgtgcaacggacaacacaccagatcatccaagatattcaagaaagcagttttgtattccaaccgccatgattgtatttcttcccctatcaaaccatgatatatggatttgggatgtttctaaattgtttcgtcgcatcaattgtgtaatcgtgtaagccgtctatttctcttcttctaatatattccgcaatgagcaattttacggtccttgaggaggtaccataaggtactatttttttattataaatttggtacctcttggtacctagatactatgaagtaccatgaggtaccaaattttacactaaaattttgatacctcatggtacctcctcaaggaccgtagaattgctcttcagcaatactcttgccgctttccttaaaaaaaaaagaaattaatctgcatactgatcattttacagataacgtctccatgtctcatatcattgcttatataactaacaatggatctaatcaaccaccttgaatagaattctgaatattatgtggcagatttggaaagcaaggaatgatctgaagtttcagggcttagttaaagagcccactcaggtgtgttttgcagcagaagccatggtaagaacttacaccatctactcagcttacaacatattgcaggatgagcttcaggagtag
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| CDS seq | atgacagcgtcagcggtgcctctccctctccgccgcaacggcgccgctccccttctccctcccccaccggtggcgctgctccccctcccagcaccggtggcgccgctccatctcccccctccctcccgtttcgttcacacggcgctgcatcggcgagtgctcgacggggtcagcgacgacgaccaccctcacttcccctctccccatcggcctcgatggtggggctacggcgcgggccatccttctctctttttctcatctgcctccgagcaggaggagagcgccggaggatggggcgccggggtagagggagagggtgccgacgtggttggggaggcggtgagtgtggccgtgcctggcgggcgtgaccacgataggagcgcagtggacggtgatggcgacgagctcagatcaaccggatcgggcggcgccaccgccgtgctctcgcggcggtggcgcccgctgtggcgccaggctggcaccgtcaacctggacacggagccctacttggacccggcggcgtacagaggcaacaacttcccggagcacaggcggagcgcgttcgtcgaccacgccctggccgccctcgccgcgtgcgagagcccgaggatcctgagccttcgcctcgcgtcggaggagatcgagggaggcgcggccgaggagaagtgtgccggtgtggtcgacgccgtccaagacgccccggcggcggcgcgcgtcgaggagctccgcgtccgctgcgacgtctcgtggttctgcaggtacggcagctgcgagagcgggagctccggcggaacgtggcggctgcagctcggatccctgccctgcgccgccgccacgctccgcgtgctgcacgccaacgacgtcggcgtcgaacgccttggcgacggtggcggcgtcggcgtcgttctcccgctcctggaggagatgcggctggtagaagccaccgtgtcaccggacacgctccagcgcgtgatcgacgccgcgccgaggctcgccaacctgtggctcgacggaatcatcttcacgagcaacgacggcagccggagactctacctcgccgacggcttccgcctccagctccgaggcccggcgctcaccgagctagccctcatcgaacgcggcATCGAGCTCGACGCGCCCCGCCTGCGCTCCTTCGTATGTCAAGGCTCCTTCCCGGGGCACTACTCACTGACATCGCCGGCGCCGGACTTCGCATCCGCCGACCTTCACTTCCACGACCACCGGAGCTATGGCGACAAAGATCCCAACAACTTGACCGTACCCTTGTGGAGCTGCCTCCGGCACCTGCACGGCGTGAGGGTCTTGAAGCTGCAGCTAGACTTCTATGCAGAGTACATCGCCATGGAAGCCGACGCTTGCGACGGCGGCGGCGTCGTCCCCGCCACGTTCCCTAACCTTGAGTATCTCGAGCTTGACGCCCATTGCAAGGATGATCACGACATGGCCACAGAATTGACACAAGCGGttctccgatggtgccctgccatccgtgacctacggctcaggttgtcagtagccgatgctgaaggccgcgtcaatgtctacaacagcaaacggcacatgatccatcaggcgagattgatgaggaacagctttgaacaggatgtgcaaaccaaaattgatgttgatgtgaccaacattacaacatctagcaagaaagttaagaaagaggtccatccttcttcccagtacattcatgagcacaatgcacttaataaaggtgatgttactgataatgaaaacaagacagaagcaaggagaaaggtgggtgttcttgtaaagacatggtggcatatttggctccaaaggaacgcaaagatcttcagaggagaagaaccggatatttggaaagcaaggaatgatctgaagtttcagggcttagttaaagagcccactcaggtgtgttttgcagcagaagccatggtaagaacttacaccatctactcagcttacaacatattgcaggatgagcttcaggagtag
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| Protein seq | MTASAVPLPLRRNGAAPLLPPPPVALLPLPAPVAPLHLPPPSRFVHTALHRRVLDGVSDDDHPHFPSPHRPRWWGYGAGHPSLFFSSASEQEESAGGWGAGVEGEGADVVGEAVSVAVPGGRDHDRSAVDGDGDELRSTGSGGATAVLSRRWRPLWRQAGTVNLDTEPYLDPAAYRGNNFPEHRRSAFVDHALAALAACESPRILSLRLASEEIEGGAAEEKCAGVVDAVQDAPAAARVEELRVRCDVSWFCRYGSCESGSSGGTWRLQLGSLPCAAATLRVLHANDVGVERLGDGGGVGVVLPLLEEMRLVEATVSPDTLQRVIDAAPRLANLWLDGIIFTSNDGSRRLYLADGFRLQLRGPALTELALIERGIELDAPRLRSFVCQGSFPGHYSLTSPAPDFASADLHFHDHRSYGDKDPNNLTVPLWSCLRHLHGVRVLKLQLDFYAEYIAMEADACDGGGVVPATFPNLEYLELDAHCKDDHDMATELTQAVLRWCPAIRDLRLRLSVADAEGRVNVYNSKRHMIHQARLMRNSFEQDVQTKIDVDVTNITTSSKKVKKEVHPSSQYIHEHNALNKGDVTDNENKTEARRKVGVLVKTWWHIWLQRNAKIFRGEEPDIWKARNDLKFQGLVKEPTQVCFAAEAMVRTYTIYSAYNILQDELQE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0011240 | OsLima_08g0011240.01 | Chr08 | 14050814 | 14056299 | + | NAM | ||
| CDS seq | atgacagcgtcagcggtgcctctccctctccgccgcaacggcgccgctccccttctccctcccccaccggtggcgctgctccccctcccagcaccggtggcgccgctccatctcccccctccctcccgtttcgttcacacggcgctgcatcggcgagtgctcgacggggtcagcgacgacgaccaccctcacttcccctctccccatcggcctcgatggtggggctacggcgcgggccatccttctctctttttctcatctgcctccgagcaggaggagagcgccggaggatggggcgccggggtagagggagagggtgccgacgtggttggggaggcggtgagtgtggccgtgcctggcgggcgtgaccacgataggagcgcagtggacggtgatggcgacgagctcagatcaaccggatcgggcggcgccaccgccgtgctctcgcggcggtggcgcccgctgtggcgccaggctggcaccgtcaacctggacacggagccctacttggacccggcggcgtacagaggcaacaacttcccggagcacaggcggagcgcgttcgtcgaccacgccctggccgccctcgccgcgtgcgagagcccgaggatcctgagccttcgcctcgcgtcggaggagatcgagggaggcgcggccgaggagaagtgtgccggtgtggtcgacgccgtccaagacgccccggcggcggcgcgcgtcgaggagctccgcgtccgctgcgacgtctcgtggttctgcaggtacggcagctgcgagagcgggagctccggcggaacgtggcggctgcagctcggatccctgccctgcgccgccgccacgctccgcgtgctgcacgccaacgacgtcggcgtcgaacgccttggcgacggtggcggcgtcggcgtcgttctcccgctcctggaggagatgcggctggtagaagccaccgtgtcaccggacacgctccagcgcgtgatcgacgccgcgccgaggctcgccaacctgtggctcgacggaatcatcttcacgagcaacgacggcagccggagactctacctcgccgacggcttccgcctccagctccgaggcccggcgctcaccgagctagccctcatcgaacgcggcATCGAGCTCGACGCGCCCCGCCTGCGCTCCTTCGTATGTCAAGGCTCCTTCCCGGGGCACTACTCACTGACATCGCCGGCGCCGGACTTCGCATCCGCCGACCTTCACTTCCACGACCACCGGAGCTATGGCGACAAAGATCCCAACAACTTGACCGTACCCTTGTGGAGCTGCCTCCGGCACCTGCACGGCGTGAGGGTCTTGAAGCTGCAGCTAGACTTCTATGCAGAGTACATCGCCATGGAAGCCGACGCTTGCGACGGCGGCGGCGTCGTCCCCGCCACGTTCCCTAACCTTGAGTATCTCGAGCTTGACGCCCATTGCAAGGATGATCACGACATGGCCACAGAATTGACACAAGCGGttctccgatggtgccctgccatccgtgacctacggctcaggttgtcagtagccgatgctgaaggccgcgtcaatgtctacaacagcaaacggcacatgatccatcaggcgagattgatgaggaacagctttgaacaggatgtgcaaaccaaaattgatgttgatgtgaccaacattacaacatctagcaagaaagttaagaaagaggtccatccttcttcccagtacattcatgagcacaatgcacttaataaaggtgatgttactgataatgaaaacaagacagaagcaaggagaaaggtgggtgttcttgtaaagacatggtggcatatttggctccaaaggaacgcaaagatcttcagaggagaagaaccggatatttggaaagcaaggaatgatctgaagtttcagggcttagttaaagagcccactcaggtgtgttttgcagcagaagccatggtaagaacttacaccatctactcagcttacaacatattgcaggatgagcttcaggagtag
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| Protein seq | MTASAVPLPLRRNGAAPLLPPPPVALLPLPAPVAPLHLPPPSRFVHTALHRRVLDGVSDDDHPHFPSPHRPRWWGYGAGHPSLFFSSASEQEESAGGWGAGVEGEGADVVGEAVSVAVPGGRDHDRSAVDGDGDELRSTGSGGATAVLSRRWRPLWRQAGTVNLDTEPYLDPAAYRGNNFPEHRRSAFVDHALAALAACESPRILSLRLASEEIEGGAAEEKCAGVVDAVQDAPAAARVEELRVRCDVSWFCRYGSCESGSSGGTWRLQLGSLPCAAATLRVLHANDVGVERLGDGGGVGVVLPLLEEMRLVEATVSPDTLQRVIDAAPRLANLWLDGIIFTSNDGSRRLYLADGFRLQLRGPALTELALIERGIELDAPRLRSFVCQGSFPGHYSLTSPAPDFASADLHFHDHRSYGDKDPNNLTVPLWSCLRHLHGVRVLKLQLDFYAEYIAMEADACDGGGVVPATFPNLEYLELDAHCKDDHDMATELTQAVLRWCPAIRDLRLRLSVADAEGRVNVYNSKRHMIHQARLMRNSFEQDVQTKIDVDVTNITTSSKKVKKEVHPSSQYIHEHNALNKGDVTDNENKTEARRKVGVLVKTWWHIWLQRNAKIFRGEEPDIWKARNDLKFQGLVKEPTQVCFAAEAMVRTYTIYSAYNILQDELQE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0330900 | RBH | 0.751358 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g24182 | RBH | 0.545491 | 0.743481 | 0.318315 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0330900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0011710 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0011840 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0011900 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0011750 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0011640 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0227700 | RBH | 0.0045815 | 0.059701 | 0.0193915 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0011730 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0241400 | RBH | 0.005826 | 0.187936 | 0.1199335 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0011320 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0011400 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0011260 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0012050 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0011340 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G011510 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0011490 | RBH | 0.0 | 0.0 | 0.0 |
