Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0305000 | OGI:06027190 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:12719378-12722616 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAAAGCACCTAACACAAATTAAATCCTCTATTTCTCTGTTTTAGAAGTCATTTTGTGACAACCAAGCTGTTGAACGCAATTTATACAACAGTACCAGATTTTGTGACATTCATGTTTATGATAGTAGCTAGCAGTCTTATCGTCTTTTAACCAACTGCACAATATTACAAACTGTCATAGTGCAAGCTTATAAAATTTCAAAGTACTGAAAATGAACATGCTCATGAAAAATAAAGGCAGGCCTCTAATCCCGAAGTCAAATGACCTACGAATTCAAAATCTCGTAATGAGCATCTGATAGATTAAATGACATATAGCCATCACATGAATTTTTCTTCATTGCTTCATCTGGTAATAAAAAATTTCAGAAGTTAGTAAAAGCAAGATATTGCGAGGTTACATAATACTCATGCATTTAGTCATCTACTGACAATGTAGATGTGCAGTACAATAAAGTGAGTAAAAGAAAGTGAGATTTCGTGCGATACTAAAAAAATCTTAACATAAGAAAATAAAGTGAGTTAATTGTTAAATACTTAATAGAATGGCATGAAATCTAATGTCACTGGGATCAATTCATGAAATAAAAATAGCCAGAATAATGATGCAACCATAATCATCAATAATTAGTTCAATGACTTACTCTGCCATGATCATCATATTGTTGTTTCTCGCACTGCACCATCTTGACTCAATTGCACCAAACTTGGTCCTAAAGTGCATCACTCATGACTCAATGTGCAGAACAGCAGTAAGGCAAGAATTTGGCAACCTCTTACCAAGTACGCTCTCTAGAACTTGACGGTATCCATTTTTGAAACCCCCTTTTGATTTCGACCTTGGATCCAAAGAAAGCTCAAACAATACCTTCAAATCCTTTTGTTCTTGCCTCTTCCACGCATAATGCCTAGACTTTAAGGAAGCTCCGTAACACTGCAATATTAGAAATTCAACAGAAAACTAACAGAAATTCAACAGAAAACTAACATTAATAAACAAACTTCTTTTTTTAGTTCTTATTTGCAAATAATTAGAAATTCCATACAATTAATTCAGACAAATATAAAAAATGTTTGTTACATTTGAGAAATAAATTGAAGTGTCTACTTACAGCCTCGCCACTTCAGGAAAAAACATAAATTTAAGAGTAAAATGCACCAGCGGTCCTTAAACTTGTCAGGAGGTTTCACTTAGGTCCACGAACTTGCAAAGTGCACATCGAGGTCTCTAAACTTAGTTTATTGTATCATCCCGGTCCAAAGCCGCGTTTGACCGTGGTCTTGCCTACGTGGCACGCCACGTGGACGATGACATGGAATTTTTCTCTTCTCCCTTTTTTTTTGGACCCGCTGTGGCCTCAAAACCTCCTCTCCTCTGCCGCTCGTCTCCTCCTCGCTGACTCGGCCGCCGCCACCGCCGCCTCTCCGCGCCGCGCCGTGCCACCGTAGCTGCTGACGATAAGCTGGCCATAGCGGCGACGGCGGATCCGCGGGCGAAGCCGCCCGCCGCGACGTCGACGCACCACCTCGAGCCGTGGGGGCAGCCGCCGCCGCCAACTCCCTTCGATGGTGGGATCGAGGAGCTTTGGGTGAAGCTCATGGGTCACCTACGAGACGCCGCCAACCGTCTCCGCGTGCCCCAGCCTAGCCCCCCACCCCCCGCTGCCGCTGACGACGACAAAGCCCGAGAGCCTACCTGCAGAGATGGACTCCGAGCCCGAGTTCAAGGCCCTGCCTCCGCCTCCACTTCTCGCCCTGCCACAGCCGCAAGCGGACGGTGCAGCGAGGCCGTGGAACCTGCTACAGTGGACACGGCGGCGCCCAGCCGCCTCCATGTTGTGGGCGGCGGCGGTGCCCGTGCCGTCCTCGTCCCGACGCTAGAAAGCGCGCCGTTCTTGGTGGCACTCACCCCGGAGGAGATCGAGGAGGACATCTATGCGCCGCCGTCCCCCTCCCTCCCGTCAGCGCCGCCATCCTCCTCCCCGAGTCGCCGCCGTCCCCTCCCTCCCGTCAGCGCCACTGTCCTCCCTCCTGTCGCGTGCTTGCCTCCGGCACGGTGGCTCGGCGAGTGGAGTAGAGGCTGATGGAAAAGGAGATGGAGGCCCGGCTGTGGAGCTCGTGGTGCAGCGGCCGCCGGAGAGAAAAGAAAATGAAGAAGGGAGAAAAAAAAGGAGAAGAAGGGAGAGAAAAAGAAGAAGGGAGAAAAAAAATTCCATGTCATCGTCCACGTGGCGTGCCACGTTGGTAAGACCACGGTCAAACGAGACTTTGGACCGGGATGATACAATAAACCAAGTTTAGGGATCTCGACGTACGTTTTACAAGTTCGTGGACCTAAGTGAAACCTCACGACAAGTTTAAGGACCGCTGCTGTATTTTACTCTAAATTTAATATCAATCATCATATTTCTAAGTCCTACATTTCTTCTCCAGATTTTAGTACTTAAGGGAAGGGATGATGAGCCATAGTAATTTATAAAAAAATACAAATCAAAACAATTATTAAACCTATATCCAGAATATATCCCGGTAGCACACATAATACATCAAGCTGCCACTCAAATGAACAAGAGTACATATTAACTTTTGCTAAAAATAAACCATCCCTTAATTCTTACTTCAAGATCAATCACAAGAAAATTGCATCAAATTAAAGCATATCATCATAAATCTTGAGCACTACTGATTAAAAGAATGGATTGGCCCAAGATGTTATTAGAAAATTTCAGAGGTTGCAGAGTTGGACAAAAAAAGATGGTTTCAGCAGGGGTTCTCACCAACAAGGAGTAGTGATTGACCGTGAAAACGACGAAAACATAGTGATTGATGGTAAGAGAACCTCCTGGGCACCTTCTCTGTGTACCTCAGGATCTTCGGCTAGGGGCTAGGGGAGCGGGGCCTCCTTGAAGAGATGTCGATGAACGATGAGGTCAGTCTCCTTGAAGATGGCGAAGTCAAGCCGCTTGTTAGGGTCGAATCCATGAATGGACTAGAGACGAAACTCTGGAGGTGGTGGAGGTCACCGGCCTTGCCGAGGTGGCCAAGCTCCGGTGTCGACAGCGGCGCGCACGGGACTCGGGGAGCGGCGGTGGTGGCGAGCGCGTGGAGGGGGAGCAACACCGGTGAGGCTGGGGGCGCCGGCGACCCGCGTGGGGAAGGCGAAGCGGCGGCGGCGCTTAGGCTAGGTCACGAGACTCGCGACAACACAAGCGTTGCTTCCGCTCCGTATCGTTAAGCTTT
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| CDS seq | GGTACACAGAGAAGGTGCCCAGGAGGTTCTCTTACCATCAATCACTATGTTTTCGTCGTTTTCACGGTCAATCACTACTCCTTGTTGTGTTACGGAGCTTCCTTAAAGTCTAGGCATTATGCGTGGAAGAGGCAAGAACAAAAGGATTTGAAGGTATTGTTTGAGCTTTCTTTGGATCCAAGGTCGAAATCAAAAGGGGGTTTCAAAAATGGATACCGTCAAGTTCTAGAGAGCGTACTTGGTAAGAGGTTGCCAAATTCTTGCCTTACTGCTGTTCTGCACATTGAGTCATGA |
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| Protein seq | GTQRRCPGGSLTINHYVFVVFTVNHYSLLCYGASLKSRHYAWKRQEQKDLKVLFELSLDPRSKSKGGFKNGYRQVLESVLGKRLPNSCLTAVLHIES |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0305000 | OsNip_08t0305000-01 | Chr08 | 12719378 | 12722616 | - | RAP2018-11-26 | ||
| CDS seq | GGTACACAGAGAAGGTGCCCAGGAGGTTCTCTTACCATCAATCACTATGTTTTCGTCGTTTTCACGGTCAATCACTACTCCTTGTTGTGTTACGGAGCTTCCTTAAAGTCTAGGCATTATGCGTGGAAGAGGCAAGAACAAAAGGATTTGAAGGTATTGTTTGAGCTTTCTTTGGATCCAAGGTCGAAATCAAAAGGGGGTTTCAAAAATGGATACCGTCAAGTTCTAGAGAGCGTACTTGGTAAGAGGTTGCCAAATTCTTGCCTTACTGCTGTTCTGCACATTGAGTCATGA
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| Protein seq | GTQRRCPGGSLTINHYVFVVFTVNHYSLLCYGASLKSRHYAWKRQEQKDLKVLFELSLDPRSKSKGGFKNGYRQVLESVLGKRLPNSCLTAVLHIES |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0305000 | OsNip_08t0305000-02 | Chr08 | 12719462 | 12722581 | - | RAP2018-11-26 | ||
| CDS seq | GGTACACAGAGAAGGTGCCCAGGAGGTTCTCTTACCATCAATCACTATGTTTTCGTCGTTTTCACGGTCAATCACTACTCCTTGTTGTGTTACGGAGCTTCCTTAAAGTCTAGGCATTATGCGTGGAAGAGGCAAGAACAAAAGGATTTGAAGGTATTGTTTGAGCTTTCTTTGGATCCAAGGTCGAAATCAAAAGGGGGTTTCAAAAATGGATACCGTCAAGTTCTAGAGAGCGTACTTGGTAAGAGGTTGCCAAATTCTTGCCTTACTGCTGTTCTGCACATTGAGTCATGA
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| Protein seq | GTQRRCPGGSLTINHYVFVVFTVNHYSLLCYGASLKSRHYAWKRQEQKDLKVLFELSLDPRSKSKGGFKNGYRQVLESVLGKRLPNSCLTAVLHIES |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.205659 | 1.858729 | 0.541977 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0305000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0010960 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0011160 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0011010 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0010710 | RBH | 5.929146 | 3.235940 | 3.540273 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0196400 | RBH | 1.918564 | 3.3340295 | 2.5488805 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0010740 | RBH | 0.106265 | 0.148009 | 0.554968 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0010460 | RBH | 0.188132 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0010320 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0011090 | RBH | 0.575277 | 0.000000 | 0.256437 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0010400 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G010560 | RBH | 0.595832 | 1.110174 | 2.131474 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0010560 | RBH | 1.869579 | 2.719005 | 1.022905 |
