Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0271600 | OGI:06061270 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:10425433-10425813 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTACTGCTGAGCATCTGATGATGCAAACTTGCTGCCAAACAAGGAGCGAAGGAAGCTTTGGATTTCACTTCCTTGATGCCTCAGCTTCTCAGTTTCTTCTTCATTCTTCCTTGCTACCTCTTTCTGGTCCTCTAATTGCTTATGTAGATCAGCTATCTGCAATTGCATTCTGGCTGATCCCATCTTCTCAGCATGCAATTCACTCTCTAGCTCACGTACATGATCATTCATTGCAGCAGCTTTGGCATTTTTCTTCATCTCTGTGGACTGCATGCCAACATTGCGAAGAAAAGTTGATTTTGGCAGAACATGAGCTACAGCTTCAACAGGAGTCTTTGGATCTTTGCCTTCTTCTGTTGGTTGAGCAACATAGGCCTCCAT |
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| CDS seq | ATGGAGGCCTATGTTGCTCAACCAACAGAAGAAGGCAAAGATCCAAAGACTCCTGTTGAAGCTGTAGCTCATGTTCTGCCAAAATCAACTTTTCTTCGCAATGTTGGCATGCAGTCCACAGAGATGAAGAAAAATGCCAAAGCTGCTGCAATGAATGATCATGTACGTGAGCTAGAGAGTGAATTGCATGCTGAGAAGATGGGATCAGCCAGAATGCAATTGCAGATAGCTGATCTACATAAGCAATTAGAGGACCAGAAAGAGGTAGCAAGGAAGAATGAAGAAGAAACTGAGAAGCTGAGGCATCAAGGAAGTGAAATCCAAAGCTTCCTTCGCTCCTTGTTTGGCAGCAAGTTTGCATCATCAGATGCTCAGCAGTAA |
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| Protein seq | MEAYVAQPTEEGKDPKTPVEAVAHVLPKSTFLRNVGMQSTEMKKNAKAAAMNDHVRELESELHAEKMGSARMQLQIADLHKQLEDQKEVARKNEEETEKLRHQGSEIQSFLRSLFGSKFASSDAQQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0271600 | OsNip_08t0271600-00 | Chr08 | 10425433 | 10425813 | - | RAP2018-11-26 | ||
| CDS seq | ATGGAGGCCTATGTTGCTCAACCAACAGAAGAAGGCAAAGATCCAAAGACTCCTGTTGAAGCTGTAGCTCATGTTCTGCCAAAATCAACTTTTCTTCGCAATGTTGGCATGCAGTCCACAGAGATGAAGAAAAATGCCAAAGCTGCTGCAATGAATGATCATGTACGTGAGCTAGAGAGTGAATTGCATGCTGAGAAGATGGGATCAGCCAGAATGCAATTGCAGATAGCTGATCTACATAAGCAATTAGAGGACCAGAAAGAGGTAGCAAGGAAGAATGAAGAAGAAACTGAGAAGCTGAGGCATCAAGGAAGTGAAATCCAAAGCTTCCTTCGCTCCTTGTTTGGCAGCAAGTTTGCATCATCAGATGCTCAGCAGTAA
More
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| Protein seq | MEAYVAQPTEEGKDPKTPVEAVAHVLPKSTFLRNVGMQSTEMKKNAKAAAMNDHVRELESELHAEKMGSARMQLQIADLHKQLEDQKEVARKNEEETEKLRHQGSEIQSFLRSLFGSKFASSDAQQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0185100 | RBH | 2.222676 | 2.388490 | 2.284574 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g17020 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0271600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006930 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006900 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0006990 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0006870 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0216900 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0158400 | RBH | 0 | 0 | 0.012595 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G014590 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
