Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0201500 | OGI:08015550 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:5878083-5879812 | ||||||||
| Gene Symbol | SHR5, - | ||||||||||
| DNA seq | GCTCACCAACCACCCCTCCCGTCGCACGGCACTGGCAGCGGCTCACCTGCCCCTTCTCGGCGCGGTGGAGCCGCCATGCATGGAGCTCGAGGGACGCCGGATGAACATCCCTTCTCCCGGAGCAGCCGGCCGGCTTCAGGCACAGGTACGCCATTCCGCCTCTTCCTTCCCCTCGCACCGACCCATGTATCCCCTCGCACAGGGTGATACACTCGAATGCAGCGAATGTTTGTTCATATTTCAAAGTTTGGTTGAAAATGTCATTCGAACCTTCCGATATGCTGCGGTTTCGGAATTTTAGAGACCCAGAAATAAACTGGCTCTAAAAGTTCTTAACAAAAGTTCACTTGGAGAGGCACATGTCTGCCGACGGGCGACGGGCGACCAGTTGTTCTTCTACTCTCAAATCTCAATTTTGGGTCGTTAGATATATACTTGGCACAGGCCTTGATGAAATCTTTTAGGTTCGCTCTACTCCGCTAGCCGCACAGTTTGTTTCAGCCAATGATTATGTACCTGGTCTATAGTTTCTATCACTGCTTAATTTCTCTGATTTTTCTTTCAAAACATTTTTCTTCTCTGATTGAGACAGCTCACCTTACAAGAGCACGTAGAGCCCACAAAGACAATGTGTAGTTTTAGTAGGACTAGAAAGCGTGACAACAACTTGCTTGTTAATGTTCAGTTCATTTGCCTCCTGACTTACTTCAGTTTCCCTCTGATCAAATATAACTGACATTTTAATTTGGTCCCCAAATATGTACAATCTTCAGCTGTCGATATCTAGTAATAATATTCTTATCATGCAAGATTAAGCAGAGTTGTCTAGAAGTACATTTTGTAATACACAACTTAGTGGCTTTTACTGATGTATTACCATAGATATCGGTGGTAAAAATTTTATTTGGAAAACCTGTCTCTGTCCTAAGCATGTCTTTACTTGTGAGAGTTGTGACAGGAGAGTGTCACACCTCTTTCTGCAGTGCTGTGTCGACGACTTACGCCAGTAGCAACTTGCAAGTCGTCGCGTCAATGGAGATGGTTCAGATGCAATGGCATTAAACATGCAAGATGGTGTATCTCATTCTCTGCATCTCCATTTGTAGTCATCCATGCACACACCAGTGAAATTGGAGACAGAGAAAGGAGAAACAACCAACGCAAGAAGGATGAATGGTGCTGTGCTGCTTCAGATGCTGCTGCTCCTCTTGCTGGCTGCTCGAGCTCAGCAGCAGCAGCAGGTGACGCAGGCCAGGACAGATCCAAAAGAAGGTACATGTCTGCACATTTTTTACACCTCTTTTTAAAGTTTTAAGCACTAACTCCTAAAGGTTTCTGGTTTTGCTGCAGTGGCGGCGCTGGACGCGATATTGGGGAGATGGGGCAAGACGACGTCGCCGCTGTGGAAGATGGCCGACGAGCCATGCTACGGCGTCGCCGTCGACGACAGCACCGACCTCGACGGCAACCCCAAGAACAACCCCGGCATCAAGTGCGACTGCTCCTACATCAACGGCACCGTCTGCCATATCACCCAGCTGTAAGCAGCTATCGTCTTTTTTTTCTTTTTGCGGGGACGACATGAGCATCTAAGAATAGAATTTTTTTTTCGCCAGGCCAGCAAATAGTCGGCCTATGTATATTAAGAGAAAGAACAGGAATGTAAGGTTGCGAGGTGCGTCAAAGCACCACAATTACCGACACAAAAGAAAAGGCTAAAATCTCACAAC
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| CDS seq | ATGCACACACCAGTGAAATTGGAGACAGAGAAAGGAGAAACAACCAACGCAAGAAGGATGAATGGTGCTGTGCTGCTTCAGATGCTGCTGCTCCTCTTGCTGGCTGCTCGAGCTCAGCAGCAGCAGCAGGTGACGCAGGCCAGGACAGATCCAAAAGAAGTGGCGGCGCTGGACGCGATATTGGGGAGATGGGGCAAGACGACGTCGCCGCTGTGGAAGATGGCCGACGAGCCATGCTACGGCGTCGCCGTCGACGACAGCACCGACCTCGACGGCAACCCCAAGAACAACCCCGGCATCAAGTGCGACTGCTCCTACATCAACGGCACCGTCTGCCATATCACCCAGCTGTAA |
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| Protein seq | MHTPVKLETEKGETTNARRMNGAVLLQMLLLLLLAARAQQQQQVTQARTDPKEVAALDAILGRWGKTTSPLWKMADEPCYGVAVDDSTDLDGNPKNNPGIKCDCSYINGTVCHITQL |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g56130 [UniProtKB/Swiss-Prot:C0LGH2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0201500 | OsNip_08t0201500-01 | Chr08 | 5878083 | 5879812 | + | RAP2018-11-26 | ||
| CDS seq | ATGCACACACCAGTGAAATTGGAGACAGAGAAAGGAGAAACAACCAACGCAAGAAGGATGAATGGTGCTGTGCTGCTTCAGATGCTGCTGCTCCTCTTGCTGGCTGCTCGAGCTCAGCAGCAGCAGCAGGTGACGCAGGCCAGGACAGATCCAAAAGAAGTGGCGGCGCTGGACGCGATATTGGGGAGATGGGGCAAGACGACGTCGCCGCTGTGGAAGATGGCCGACGAGCCATGCTACGGCGTCGCCGTCGACGACAGCACCGACCTCGACGGCAACCCCAAGAACAACCCCGGCATCAAGTGCGACTGCTCCTACATCAACGGCACCGTCTGCCATATCACCCAGCTGTAA
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| Protein seq | MHTPVKLETEKGETTNARRMNGAVLLQMLLLLLLAARAQQQQQVTQARTDPKEVAALDAILGRWGKTTSPLWKMADEPCYGVAVDDSTDLDGNPKNNPGIKCDCSYINGTVCHITQL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g10310 | SBH | 0.0 | 0.0 | 0.082026 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0201500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006560 | RBH | 0.000000 | 0.0 | 0.362723 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006590 | SBH | 0.0 | 0.0 | 1.880411 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0006630 | RBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0006580 | SBH | 0.539574 | 0.064760 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0006600 | SBH | 0.000000 | 0.0 | 11.541100 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0089700 | SBH | 0.0527565 | 0.0580075 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0006240 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0092900 | RBH | 0.018507 | 3.182619 | 0.168963 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0006260 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006270 | SBH | 0.044845 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0006360 | SBH | 2.114534 | 3.288301 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0006600 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0006360 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G006430 | SBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0006100 | SBH | 0.0 | 0.000000 | 0.0 |
