Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0197800 | OGI:08014880 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:5652681-5655649 | ||||||||
| Gene Symbol | OsFbox425, Os_F0168, OsFbox427, Os_F0221 | ||||||||||
| DNA seq | TAGCGGCTCATAGTCATCTTCTCCAACCGCCGTCGGCCGCCTTCCCCCGTGCCGGCAACCGCCGCCGGCTCTGAAACGGCAAGAACTCACCGTCGATCGGACGAAATTTTCCGGTGAGTTCAATTCCCATCTCCTCCCCTGCAACGCAATATTCTCGAGGGACTCATCTTCTTGCAAATTCCTGGCGCAAGATGAGCGGGAGGCCCCGCGCAGGACATGTGTTCGACGAAATGCCTCCGAAGAAAGCCAAGCTGTCCGCCGGCGCCGGCGCCGGCGACCGCCTCAGCGCCCTCCCGGACGCGCTGCTGCACCACGTCATGTCGTTCCTGCGGGCGTAGGAGGTGGCGCGCACCTGCGTGCTCGCCCGCCGCTGGCGCCACCTCTGGGCCTCCGCGCCCTGCGTCGACCTCCGCGTCTGGCGCGGCGGAGGCCACCTCCCACACCCGGAGGAGTTCGCCAAGTTCGCCTACCGCTTCTTGCTCGAGCGGGACGTGTCCGCGCCGGTGGACACTCTCCGGGTGCTGTCCAGCCCCGTGTGCGACCCCGAGGTGGAGGATTACTCCACTTGCGATGTCGATGCGTGGATCCGTGCTGCCATCGAGCGGAGAGCCCAGGTGATCCATATTTCTCACCATCCGAAGGACGAGGCATTTAGTAACTTCGACCATGTCCCCATCATCTCCTGCCACCTCAAACACCTGAAGCTGTCTGGCTACTTGTTTCGACAAAGGACACTAATGCAGCTCTCTTCTCAGTGCCCTTCATTGGAAGTTCTAGAGCTCAAAGGCTGCTATCTGGATGGCCATCAGATATCATCTGCCTCTCTCAAGATCTTGACCATTGTCGAGTGCAGGATCATGGAGGGCTTCACCATCGCTGCTCCGAACCTCGTATCGCTGTGCTGCGTCACGCCATACCACCGTGCTCCCTTGTTTGAGAATGTGGGGTCACTCACACTGGATGCAGCCACTATCGTGCTTGATGATTCGTTTCTATATGCTGGTTATGAATACGAGTATGAAGACATCGATGAGGATGCGATCGAAGGAAACGGTAGCGAAGACGGTGAAGGTTCCTTGAATGATTCTGACTACGACAGTGATGCTGTCAGTGATGCAAGTACCTGTGAATACAGTGAGATTGCAAACAACTATGATGATGAAAAACAGCTTGTAGAGCATGATGAGGTACATAATCGAAGCAAAGGCAACTATCATGGCTATGATCACAGGTATAAAGCCAGACCATATAGGGGCTATCGCAAGAAGAAATTCAATGGTGGTAAAGTTCTAGGTGGTGATAATGTTCTTCACAGCCTATCGAATGCTAGAAGTTTGGAGCTATTAGCTGATGCTGGAGAGGTATAGTTACGAATCTTCTGCTATGTGGCAATACCCCTTAATATGGATTCATCAGTTATTTGCATTGCAGACACAAATACCTTTCTCAACTTCGTCAAACCTCCGTAGGAGTATTGCACTTGAGTGTAATCAAATTTTACGAAGTAAAGTTATTGTATAATAAAAATGTGTAGGCTGCTGACAGTTTTTTTTTTTGTCATTTTCTTTAGAACGTATCTACTAACTACTAAAGAGTTACTAAGTTTTAATTTTGCATAATCACATATTTAAGCACAGGTGTTGTTCTGTGAAATTCGTATTAGAAAGGTGGTTTTTTTTTTCATTGCTGTGAGCTGAACTTTTGTGATTGCAACAGTTGGATACACATGGAATTTACATATGTGTATCTTCACACTATTCCTACACATTTTTATACCAGAAATAAATTTGCATTTTTACTGAACGGTGCTGGTCCTTGGTAGTATAGCACCAAGCTATTCTTTACCTTTTCTAAACGCTGAACTAATTCATCTGTGTGTGCCATATGAAGGTGATTCTGAATAGGGAGCTGAAAACATGCCCAACTTTTAGTAACCTGAAGACATTGTCCCTTGGTGAATGGTGTATGGGTGCTGACTTCGGTCCATTAATTTCCTTCCTGCAGCATTCACCAAATCTGGAGAAGCTTTTCCTTGAACTTAAATTGGTACATATATTTATATCTGTCGAATTTGCTTGATGCTTTACACTTTTCATATTTCGACAAATCAATTATAGCACATATTCACTAATAATTATCTTCTTCTGCAATCCAAAAAAAAGGATTATGACAACACACAGGCAATGAAAGAAGGTACCAAACCAAAGGGATGCTCATTTGCTTGCACACACCTTAAAATGGTAAAGATCAAATGCTCTATTGATGATGTGAGAGTCCATTGGTTGGCACAGTTGTTCAGGACTAACGGCGTACCCATTGAGAATATCTTTGTGCGTCAGACTAGCAGCACTTGTGAGTGATACTTCTCTTGTAACTCTCATCTCTGATGAAGTTGCAGTACCGTCATACATTATTACTGTTTTTGTTAGATGGAAAGCATTTGGTTCACTTGATGTTCTTTGTGGTGCATGATCGAAAACCATAAACTAATATGTTTTGTTTTCTGACATATCCTCCAGGCCTTCCCGCCAGACCATGGTAATGTGAAGCTAGAGGGTGGGACCAATAATATCTTATGATCTTGTTCAATATGATAATTTCGCTTTATCACATTGTATTTAGCAGGGTTCTGAAGGGTAAGCATCTGCACTGATCATGCTGGGATTACAGAATATGTGATGCTTCTTTTGAGTGCATTGGAACTATGTATATATGGCTACCTTAACGCGAAAATGATCTTATCTAGTGGAATGATTTTAGCTATGTTATCTCTAGCTTGAGGTCGGCTTCTTCCTGAAACGATTTGACGAGTTCTTTTTGCTTAATGCTATAACTGAAAGTGTAATATGTTCAATCTTCTATGTGTGGTAAAAACGCTGTGGTTGCTGGATTCGATACTTGTGACATAAAAACTTTGTACAGCGACGAGCCATTACCAATGCGCATATGAAAGACATGTCCAGTCTTGC
More
|
||||||||||
| CDS seq | GAGGTGGCGCGCACCTGCGTGCTCGCCCGCCGCTGGCGCCACCTCTGGGCCTCCGCGCCCTGCGTCGACCTCCGCGTCTGGCGCGGCGGAGGCCACCTCCCACACCCGGAGGAGTTCGCCAAGTTCGCCTACCGCTTCTTGCTCGAGCGGGACGTGTCCGCGCCGGTGGACACTCTCCGGGTGCTGTCCAGCCCCGTGTGCGACCCCGAGGTGGAGGATTACTCCACTTGCGATGTCGATGCGTGGATCCGTGCTGCCATCGAGCGGAGAGCCCAGGTGATCCATATTTCTCACCATCCGAAGGACGAGGCATTTAGTAACTTCGACCATGTCCCCATCATCTCCTGCCACCTCAAACACCTGAAGCTGTCTGGCTACTTGTTTCGACAAAGGACACTAATGCAGCTCTCTTCTCAGTGCCCTTCATTGGAAGTTCTAGAGCTCAAAGGCTGCTATCTGGATGGCCATCAGATATCATCTGCCTCTCTCAAGATCTTGACCATTGTCGAGTGCAGGATCATGGAGGGCTTCACCATCGCTGCTCCGAACCTCGTATCGCTGTGCTGCGTCACGCCATACCACCGTGCTCCCTTGTTTGAGAATGTGGGGTCACTCACACTGGATGCAGCCACTATCGTGCTTGATGATTCGTTTCTATATGCTGGTTATGAATACGAGTATGAAGACATCGATGAGGATGCGATCGAAGGAAACGGTAGCGAAGACGGTGAAGGTTCCTTGAATGATTCTGACTACGACAGTGATGCTGTCAGTGATGCAAGTACCTGTGAATACAGTGAGATTGCAAACAACTATGATGATGAAAAACAGCTTGTAGAGCATGATGAGGTACATAATCGAAGCAAAGGCAACTATCATGGCTATGATCACAGGTATAAAGCCAGACCATATAGGGGCTATCGCAAGAAGAAATTCAATGGTGGTAAAGTTCTAGGTGGTGATAATGTTCTTCACAGCCTATCGAATGCTAGAAGTTTGGAGCTATTAGCTGATGCTGGAGAGGTGATTCTGAATAGGGAGCTGAAAACATGCCCAACTTTTAGTAACCTGAAGACATTGTCCCTTGGTGAATGGTGTATGGGTGCTGACTTCGGTCCATTAATTTCCTTCCTGCAGCATTCACCAAATCTGGAGAAGCTTTTCCTTGAACTTAAATTGGATTATGACAACACACAGGCAATGAAAGAAGGTACCAAACCAAAGGGATGCTCATTTGCTTGCACACACCTTAAAATGGTAAAGATCAAATGCTCTATTGATGATGTGAGAGTCCATTGGTTGGCACAGTTGTTCAGGACTAACGGCGTACCCATTGAGAATATCTTTGTGCGTCAGACTAGCAGCACTTGTGAGTGA
More
|
||||||||||
| Protein seq | EVARTCVLARRWRHLWASAPCVDLRVWRGGGHLPHPEEFAKFAYRFLLERDVSAPVDTLRVLSSPVCDPEVEDYSTCDVDAWIRAAIERRAQVIHISHHPKDEAFSNFDHVPIISCHLKHLKLSGYLFRQRTLMQLSSQCPSLEVLELKGCYLDGHQISSASLKILTIVECRIMEGFTIAAPNLVSLCCVTPYHRAPLFENVGSLTLDAATIVLDDSFLYAGYEYEYEDIDEDAIEGNGSEDGEGSLNDSDYDSDAVSDASTCEYSEIANNYDDEKQLVEHDEVHNRSKGNYHGYDHRYKARPYRGYRKKKFNGGKVLGGDNVLHSLSNARSLELLADAGEVILNRELKTCPTFSNLKTLSLGEWCMGADFGPLISFLQHSPNLEKLFLELKLDYDNTQAMKEGTKPKGCSFACTHLKMVKIKCSIDDVRVHWLAQLFRTNGVPIENIFVRQTSSTCE |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0197800 | OsNip_08t0197800-01 | Chr08 | 5652681 | 5655649 | + | RAP2018-11-26 | ||
| CDS seq | GAGGTGGCGCGCACCTGCGTGCTCGCCCGCCGCTGGCGCCACCTCTGGGCCTCCGCGCCCTGCGTCGACCTCCGCGTCTGGCGCGGCGGAGGCCACCTCCCACACCCGGAGGAGTTCGCCAAGTTCGCCTACCGCTTCTTGCTCGAGCGGGACGTGTCCGCGCCGGTGGACACTCTCCGGGTGCTGTCCAGCCCCGTGTGCGACCCCGAGGTGGAGGATTACTCCACTTGCGATGTCGATGCGTGGATCCGTGCTGCCATCGAGCGGAGAGCCCAGGTGATCCATATTTCTCACCATCCGAAGGACGAGGCATTTAGTAACTTCGACCATGTCCCCATCATCTCCTGCCACCTCAAACACCTGAAGCTGTCTGGCTACTTGTTTCGACAAAGGACACTAATGCAGCTCTCTTCTCAGTGCCCTTCATTGGAAGTTCTAGAGCTCAAAGGCTGCTATCTGGATGGCCATCAGATATCATCTGCCTCTCTCAAGATCTTGACCATTGTCGAGTGCAGGATCATGGAGGGCTTCACCATCGCTGCTCCGAACCTCGTATCGCTGTGCTGCGTCACGCCATACCACCGTGCTCCCTTGTTTGAGAATGTGGGGTCACTCACACTGGATGCAGCCACTATCGTGCTTGATGATTCGTTTCTATATGCTGGTTATGAATACGAGTATGAAGACATCGATGAGGATGCGATCGAAGGAAACGGTAGCGAAGACGGTGAAGGTTCCTTGAATGATTCTGACTACGACAGTGATGCTGTCAGTGATGCAAGTACCTGTGAATACAGTGAGATTGCAAACAACTATGATGATGAAAAACAGCTTGTAGAGCATGATGAGGTACATAATCGAAGCAAAGGCAACTATCATGGCTATGATCACAGGTATAAAGCCAGACCATATAGGGGCTATCGCAAGAAGAAATTCAATGGTGGTAAAGTTCTAGGTGGTGATAATGTTCTTCACAGCCTATCGAATGCTAGAAGTTTGGAGCTATTAGCTGATGCTGGAGAGGTGATTCTGAATAGGGAGCTGAAAACATGCCCAACTTTTAGTAACCTGAAGACATTGTCCCTTGGTGAATGGTGTATGGGTGCTGACTTCGGTCCATTAATTTCCTTCCTGCAGCATTCACCAAATCTGGAGAAGCTTTTCCTTGAACTTAAATTGGATTATGACAACACACAGGCAATGAAAGAAGGTACCAAACCAAAGGGATGCTCATTTGCTTGCACACACCTTAAAATGGTAAAGATCAAATGCTCTATTGATGATGTGAGAGTCCATTGGTTGGCACAGTTGTTCAGGACTAACGGCGTACCCATTGAGAATATCTTTGTGCGTCAGACTAGCAGCACTTGTGAGTGA
More
|
|||||||
| Protein seq | EVARTCVLARRWRHLWASAPCVDLRVWRGGGHLPHPEEFAKFAYRFLLERDVSAPVDTLRVLSSPVCDPEVEDYSTCDVDAWIRAAIERRAQVIHISHHPKDEAFSNFDHVPIISCHLKHLKLSGYLFRQRTLMQLSSQCPSLEVLELKGCYLDGHQISSASLKILTIVECRIMEGFTIAAPNLVSLCCVTPYHRAPLFENVGSLTLDAATIVLDDSFLYAGYEYEYEDIDEDAIEGNGSEDGEGSLNDSDYDSDAVSDASTCEYSEIANNYDDEKQLVEHDEVHNRSKGNYHGYDHRYKARPYRGYRKKKFNGGKVLGGDNVLHSLSNARSLELLADAGEVILNRELKTCPTFSNLKTLSLGEWCMGADFGPLISFLQHSPNLEKLFLELKLDYDNTQAMKEGTKPKGCSFACTHLKMVKIKCSIDDVRVHWLAQLFRTNGVPIENIFVRQTSSTCE
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0197900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g09780 | RBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0197800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006300 | SBH | 0.000000 | 11.647809 | 6.764721 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006260 | RBH | 0.084461 | 0.000000 | 0.558428 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0006350 | RBH | 0.204676 | 0.0 | 0.646773 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0006300 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0006120 | SBH | 7.088274 | 0.0 | 6.256783 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0086100 | RBH | 0.2318045 | 0.4451535 | 0.2860115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0006000 | SBH | 0.0 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0089300 | RBH | 0.0293785 | 0.304893 | 2.395792 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0005950 | SBH | 0.210847 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006030 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0005910 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0006170 | RBH | 0.000000 | 0.000000 | 0.290822 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0006010 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G006010 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0005880 | RBH | 0.226259 | 0.0 | 0.000000 |
