Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0150600 | OGI:08007660 | 8/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:2909637-2912538 | ||||||||
| Gene Symbol | OsFbox406, Os_F0075, - | ||||||||||
| DNA seq | ACATATAAAGAGCACTCTCCACGGCCAAGTTTAATTTTGGGGTGAAAAATGTCAAAAGATACATGACTTGCTTAGACTTCAGTCTTCAAACACAAAACAAATAACAAGTACCATGATGATGCTGATGGATAAAAGTTTCAAGTGGAAGAACAGCAGTAGTAAAAAGGATTTCCAGGAAGATTTGGTACTGGGCAGAGCAGTATGACCCACAGCAACTCTCATCTTTAACATATAAACTACAAACTGAACATGGGTTGCCGATCATGAGGATCTAATCACTGATCAGAGGACCATGCTCGTACATCTGCCCGAGCCCAAGTGCCGAACCTACCTACAAGTTAAAATGGTGTCTGTAAATGCCTTCACGACTATAGAAAACCAGTGCTGTAAGGTGAAAACAGCCATACCTAGTCGAAACGCTTGTACGGTTTGATAACAATTTCTGGCAGAGAGTTCGCATTGGCAAGTATAGCATTAACTATAGCAGGCACCCTTTTGTCGTCCTGCACACAGATGATTTTGACCTTCTTAAGACGCTCACAACTGAACGACAGGTCTGGCGTCTCTTCTTGTGGGTAACTCATCCACTGTTCCCAAGCCAAACCTTCAATCTGGTGACAAGAACTGAAAACATATCAGCATGGTGATTAGGAAGCAAATAAAAACTCCAGTCAGGTAAGATATCTTTACCATTCCAAGATGCAGAGTGAGTTTCTCTATGATTGGTGAGCAACGAAGCAAGTAAATCAGCGCGCTTAGGTCAACATCCACATACCAATCATCGACAGACAGTTTTTTTAGGTTATTGAATGATTGGCACCTCCGGAGATCCCTTTTTAGTACCTCGTTTTGCCTTGAACGAAAAGAATCATCCTCATCCTCATCCTCATCCTGCAATGGCATATAGAGAACTAGAGACATCAGCTATAGATCATGAAAAACAAAAGAAAATCATGGCAAAGCTAGAGCACAGATCATACATCGTATTCTTCATTTAGCAACTTCAATTTTGTTACATTTGACAAACCACTGAGGATGTTGTATTTCGTATCAAAACATGGGAAGGACATATCATCAAGGCGAATGTAGGCTTTTGCCACGGATGATACATTCACAAGGCAAGGAGCTAAAAAGGGAAGGCACTCCAGGTGGAGTGAAACAAGGCTCGGGGTATCTATCACAAGATCTTTATAATCATCGTGAACAGAATCACCATTGTCAGGGCTATGTGAGATAAAGGTTAAATTCTTCAAAGAGGTGGAAGAAAATCTGGTTGCATACACGCAACAATCTATCATCACAAGATCTTGCAATGCTGGACAGCCAGAAAAAAGCTTCTAAATAAAGAGGTCACTGATGGTAACATTACGAAGACGCAGTATTTTCAGATGGGACAATATGAAGGAAGAATGGTCTAGATCAAAATACTCAGAATAATGCTCACAGATGTGAAGCTCACGGACATTTCTCCTCAAAGCATAGCCAACCCACATGTTAGCGGTGTGATGGTTCAGGGAAACACTACCATGTTGATATAGCGTATACATGCGAAGGCTATCTAGAGGCACGCAACCACGGCGCAGTACCAAGTTGTCCATAAAATTCACAAATCCCATCTTGCTGGTGAATTCAGATGCTTTGATCTCGAGGCACTGTACAGATTTCCAAATGTGACGCCACCTAGTGGACAGCACGCATGTCTGTATGGCCTCCCGTGTAGTCATAAAACAGAGGATATGTTGCAGTGACTCATCAGGGAGGCTGCTGATAAAGTCATAGGTGCTGGCCTCTAGTACTGTTGGTCTCATACGCTTGTTAGACATTCTTATCTCCCAGTCTCATGGACAATTCACTCAAATATGTGGTGAACGATATACCCCTGCACACAAAACCAGCAATATACATGTTAGTGAAAATGTAAACAACTTTGGAAAATATAGCTATTCAATCTGATGTAGCAATTCTTGCTAAGCAAATATAATAGACATAATGGACAAAACCATGAAGTAATCATCTTTTTGTGTAGAAGAATCCATCGAATTCCATGTGCAATTTGACAAAACCAGGATCATTTAATTCCTTAGTCCATTACATCTTGGGAACTAATGGCACCTAAAGTAAAGATGCATGGTTTTCCACGAATCAGACCAACAATGTGAGCCATCTTGTCTGTGCTTGATTTTGATAGGTAAGAATGTAAGATGATCACTTCTCTTTTCGACATTACCTTTCACATGCCATAACCCTTCTCAGTCTCTACAACCATTTACAAAGAAGGTTCATATTTAGCATAGAAAGACACCAAGTTCCTAAACTTCACTTCTGATGGACATTAGAACAACGCTCCTTCTCACAAGTCTGTACTAATCTTTGGGGCTAACACCCTGAAGGGTAGACTAGTAAGAATCAGGCTAACCCTCACACATCAATTCTTTTCTCAAGGAATAAAATGCTCCAAAAAACCCCATCCCTCATCTCTTCATTTCAAAACCCTCATACATTCAGATAGCATAATACTCCAGAACATATTAACCCGATCCCTAAAAATTGGACCAGGTACGTTTACAACACCTCCCCCAAACCCCCACCCAAAAATAAATTAAAGATCCTAATAACCAGACCTCGCAAAATTGACATCAGAAATTCGCAATCATTTCCACCAGAAACTGCGAAATTCATTCACCTGATTCAACCCAAACAAGAAAAAAAAAACTAACGAAGACTACAAGACCTAGGCAGCAAAGCAAGTAGTGCAGGCTACAGGAAGCAACAGAAAAAACCTATCCAGCAGATGGAGATGGACCCGGGAGAAAAAGGGTTAGAGCTGAGGGTGCGCGCGCTCCGGTGCCACTTCCGTCTACCTCCCCGCGGCGGCGGGCGGCGCTCCGGCGAGAGCAACCGC
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| CDS seq | ATGTCTAACAAGCGTATGAGACCAACAGTACTAGAGGCCAGCACCTATGACTTTATCAGCAGCCTCCCTGATGAGTCACTGCAACATATCCTCTGTTTTATGACTACACGGGAGGCCATACAGACATGCGTGCTGTCCACTAGGTGGCGTCACATTTGGAAATCTGTACAGTGCCTCGAGATCAAAGCATCTGAATTCACCAGCAAGATGGGATTTGTGAATTTTATGGACAACTTGGTACTGCGCCGTGGTTGCGTGCCTCTAGATAGCCTTCGCATGTATACGCTATATCAACATGGTAGTGTTTCCCTGAACCATCACACCGCTAACATGTGGGTTGGCTATGCTTTGAGGAGAAATGTCCGTGAGCTTCACATCTGA |
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| Protein seq | MSNKRMRPTVLEASTYDFISSLPDESLQHILCFMTTREAIQTCVLSTRWRHIWKSVQCLEIKASEFTSKMGFVNFMDNLVLRRGCVPLDSLRMYTLYQHGSVSLNHHTANMWVGYALRRNVRELHI |
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| Function | Putative F-box/LRR-repeat protein At4g13960 [UniProtKB/Swiss-Prot:O23257] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0150600 | OsNip_08t0150600-01 | Chr08 | 2909637 | 2912538 | - | RAP2018-11-26 | ||
| CDS seq | ATGTCTAACAAGCGTATGAGACCAACAGTACTAGAGGCCAGCACCTATGACTTTATCAGCAGCCTCCCTGATGAGTCACTGCAACATATCCTCTGTTTTATGACTACACGGGAGGCCATACAGACATGCGTGCTGTCCACTAGGTGGCGTCACATTTGGAAATCTGTACAGTGCCTCGAGATCAAAGCATCTGAATTCACCAGCAAGATGGGATTTGTGAATTTTATGGACAACTTGGTACTGCGCCGTGGTTGCGTGCCTCTAGATAGCCTTCGCATGTATACGCTATATCAACATGGTAGTGTTTCCCTGAACCATCACACCGCTAACATGTGGGTTGGCTATGCTTTGAGGAGAAATGTCCGTGAGCTTCACATCTGA
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| Protein seq | MSNKRMRPTVLEASTYDFISSLPDESLQHILCFMTTREAIQTCVLSTRWRHIWKSVQCLEIKASEFTSKMGFVNFMDNLVLRRGCVPLDSLRMYTLYQHGSVSLNHHTANMWVGYALRRNVRELHI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0150200 | RBH | 0.176724 | 0.271851 | 0.092556 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g05460 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0150600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0003360 | RBH | 0.082051 | 0.000000 | 0.163892 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0003410 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0003380 | RBH | 0.000000 | 2.299129 | 0.908078 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003360 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0003190 | RBH | 0.000000 | 0.000000 | 1.349783 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0044000 | SBH | 0.731311 | 2.3461565 | 1.7886605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0003050 | RBH | 0.000000 | 0.066941 | 0.052222 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0050500 | RBH | 0.1171625 | 1.5832375 | 2.5610825 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0003070 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0003120 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002950 | RBH | 5.264653 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0003200 | RBH | 0.0 | 0.000000 | 0.147167 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0003120 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G003060 | RBH | 0.0 | 0.0 | 0.176755 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0002940 | RBH | 0.0 | 0.0 | 0.0 |
