Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
Os08g0150600 | OGI:08007660 | 8/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr08:2909637-2912538 | ||||||||
Gene Symbol | OsFbox406, Os_F0075, - | ||||||||||
DNA seq | ACATATAAAGAGCACTCTCCACGGCCAAGTTTAATTTTGGGGTGAAAAATGTCAAAAGATACATGACTTGCTTAGACTTCAGTCTTCAAACACAAAACAAATAACAAGTACCATGATGATGCTGATGGATAAAAGTTTCAAGTGGAAGAACAGCAGTAGTAAAAAGGATTTCCAGGAAGATTTGGTACTGGGCAGAGCAGTATGACCCACAGCAACTCTCATCTTTAACATATAAACTACAAACTGAACATGGGTTGCCGATCATGAGGATCTAATCACTGATCAGAGGACCATGCTCGTACATCTGCCCGAGCCCAAGTGCCGAACCTACCTACAAGTTAAAATGGTGTCTGTAAATGCCTTCACGACTATAGAAAACCAGTGCTGTAAGGTGAAAACAGCCATACCTAGTCGAAACGCTTGTACGGTTTGATAACAATTTCTGGCAGAGAGTTCGCATTGGCAAGTATAGCATTAACTATAGCAGGCACCCTTTTGTCGTCCTGCACACAGATGATTTTGACCTTCTTAAGACGCTCACAACTGAACGACAGGTCTGGCGTCTCTTCTTGTGGGTAACTCATCCACTGTTCCCAAGCCAAACCTTCAATCTGGTGACAAGAACTGAAAACATATCAGCATGGTGATTAGGAAGCAAATAAAAACTCCAGTCAGGTAAGATATCTTTACCATTCCAAGATGCAGAGTGAGTTTCTCTATGATTGGTGAGCAACGAAGCAAGTAAATCAGCGCGCTTAGGTCAACATCCACATACCAATCATCGACAGACAGTTTTTTTAGGTTATTGAATGATTGGCACCTCCGGAGATCCCTTTTTAGTACCTCGTTTTGCCTTGAACGAAAAGAATCATCCTCATCCTCATCCTCATCCTGCAATGGCATATAGAGAACTAGAGACATCAGCTATAGATCATGAAAAACAAAAGAAAATCATGGCAAAGCTAGAGCACAGATCATACATCGTATTCTTCATTTAGCAACTTCAATTTTGTTACATTTGACAAACCACTGAGGATGTTGTATTTCGTATCAAAACATGGGAAGGACATATCATCAAGGCGAATGTAGGCTTTTGCCACGGATGATACATTCACAAGGCAAGGAGCTAAAAAGGGAAGGCACTCCAGGTGGAGTGAAACAAGGCTCGGGGTATCTATCACAAGATCTTTATAATCATCGTGAACAGAATCACCATTGTCAGGGCTATGTGAGATAAAGGTTAAATTCTTCAAAGAGGTGGAAGAAAATCTGGTTGCATACACGCAACAATCTATCATCACAAGATCTTGCAATGCTGGACAGCCAGAAAAAAGCTTCTAAATAAAGAGGTCACTGATGGTAACATTACGAAGACGCAGTATTTTCAGATGGGACAATATGAAGGAAGAATGGTCTAGATCAAAATACTCAGAATAATGCTCACAGATGTGAAGCTCACGGACATTTCTCCTCAAAGCATAGCCAACCCACATGTTAGCGGTGTGATGGTTCAGGGAAACACTACCATGTTGATATAGCGTATACATGCGAAGGCTATCTAGAGGCACGCAACCACGGCGCAGTACCAAGTTGTCCATAAAATTCACAAATCCCATCTTGCTGGTGAATTCAGATGCTTTGATCTCGAGGCACTGTACAGATTTCCAAATGTGACGCCACCTAGTGGACAGCACGCATGTCTGTATGGCCTCCCGTGTAGTCATAAAACAGAGGATATGTTGCAGTGACTCATCAGGGAGGCTGCTGATAAAGTCATAGGTGCTGGCCTCTAGTACTGTTGGTCTCATACGCTTGTTAGACATTCTTATCTCCCAGTCTCATGGACAATTCACTCAAATATGTGGTGAACGATATACCCCTGCACACAAAACCAGCAATATACATGTTAGTGAAAATGTAAACAACTTTGGAAAATATAGCTATTCAATCTGATGTAGCAATTCTTGCTAAGCAAATATAATAGACATAATGGACAAAACCATGAAGTAATCATCTTTTTGTGTAGAAGAATCCATCGAATTCCATGTGCAATTTGACAAAACCAGGATCATTTAATTCCTTAGTCCATTACATCTTGGGAACTAATGGCACCTAAAGTAAAGATGCATGGTTTTCCACGAATCAGACCAACAATGTGAGCCATCTTGTCTGTGCTTGATTTTGATAGGTAAGAATGTAAGATGATCACTTCTCTTTTCGACATTACCTTTCACATGCCATAACCCTTCTCAGTCTCTACAACCATTTACAAAGAAGGTTCATATTTAGCATAGAAAGACACCAAGTTCCTAAACTTCACTTCTGATGGACATTAGAACAACGCTCCTTCTCACAAGTCTGTACTAATCTTTGGGGCTAACACCCTGAAGGGTAGACTAGTAAGAATCAGGCTAACCCTCACACATCAATTCTTTTCTCAAGGAATAAAATGCTCCAAAAAACCCCATCCCTCATCTCTTCATTTCAAAACCCTCATACATTCAGATAGCATAATACTCCAGAACATATTAACCCGATCCCTAAAAATTGGACCAGGTACGTTTACAACACCTCCCCCAAACCCCCACCCAAAAATAAATTAAAGATCCTAATAACCAGACCTCGCAAAATTGACATCAGAAATTCGCAATCATTTCCACCAGAAACTGCGAAATTCATTCACCTGATTCAACCCAAACAAGAAAAAAAAAACTAACGAAGACTACAAGACCTAGGCAGCAAAGCAAGTAGTGCAGGCTACAGGAAGCAACAGAAAAAACCTATCCAGCAGATGGAGATGGACCCGGGAGAAAAAGGGTTAGAGCTGAGGGTGCGCGCGCTCCGGTGCCACTTCCGTCTACCTCCCCGCGGCGGCGGGCGGCGCTCCGGCGAGAGCAACCGC
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CDS seq | ATGTCTAACAAGCGTATGAGACCAACAGTACTAGAGGCCAGCACCTATGACTTTATCAGCAGCCTCCCTGATGAGTCACTGCAACATATCCTCTGTTTTATGACTACACGGGAGGCCATACAGACATGCGTGCTGTCCACTAGGTGGCGTCACATTTGGAAATCTGTACAGTGCCTCGAGATCAAAGCATCTGAATTCACCAGCAAGATGGGATTTGTGAATTTTATGGACAACTTGGTACTGCGCCGTGGTTGCGTGCCTCTAGATAGCCTTCGCATGTATACGCTATATCAACATGGTAGTGTTTCCCTGAACCATCACACCGCTAACATGTGGGTTGGCTATGCTTTGAGGAGAAATGTCCGTGAGCTTCACATCTGA |
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Protein seq | MSNKRMRPTVLEASTYDFISSLPDESLQHILCFMTTREAIQTCVLSTRWRHIWKSVQCLEIKASEFTSKMGFVNFMDNLVLRRGCVPLDSLRMYTLYQHGSVSLNHHTANMWVGYALRRNVRELHI |
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Function | Putative F-box/LRR-repeat protein At4g13960 [UniProtKB/Swiss-Prot:O23257] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
Os08g0150600 | Os08t0150600-01 | Chr08 | 2909637 | 2912538 | - | irgsp1_rep | ||
CDS seq | ATGTCTAACAAGCGTATGAGACCAACAGTACTAGAGGCCAGCACCTATGACTTTATCAGCAGCCTCCCTGATGAGTCACTGCAACATATCCTCTGTTTTATGACTACACGGGAGGCCATACAGACATGCGTGCTGTCCACTAGGTGGCGTCACATTTGGAAATCTGTACAGTGCCTCGAGATCAAAGCATCTGAATTCACCAGCAAGATGGGATTTGTGAATTTTATGGACAACTTGGTACTGCGCCGTGGTTGCGTGCCTCTAGATAGCCTTCGCATGTATACGCTATATCAACATGGTAGTGTTTCCCTGAACCATCACACCGCTAACATGTGGGTTGGCTATGCTTTGAGGAGAAATGTCCGTGAGCTTCACATCTGA
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Protein seq | MSNKRMRPTVLEASTYDFISSLPDESLQHILCFMTTREAIQTCVLSTRWRHIWKSVQCLEIKASEFTSKMGFVNFMDNLVLRRGCVPLDSLRMYTLYQHGSVSLNHHTANMWVGYALRRNVRELHI |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | None | None | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0150600 | RBH | 0.000000 | 0.000000 | 0.000000 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g05460 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | Os08g0150200 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0003360 | RBH | 0.082051 | 0.000000 | 0.163892 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0003410 | RBH | 0.0 | 0.0 | 0.000000 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0003380 | RBH | 0.000000 | 2.299129 | 0.908078 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003360 | RBH | 0.0 | 0.000000 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0003190 | RBH | 0.000000 | 0.000000 | 1.349783 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0044000 | SBH | 0.731311 | 2.3461565 | 1.7886605 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0003050 | RBH | 0.000000 | 0.066941 | 0.052222 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0050500 | RBH | 0.1171625 | 1.5832375 | 2.5610825 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0003070 | RBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0003120 | RBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002950 | RBH | 5.264653 | 0.000000 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0003200 | RBH | 0.0 | 0.000000 | 0.147167 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0003120 | RBH | 0.000000 | 0.000000 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G003060 | RBH | 0.0 | 0.0 | 0.176755 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0002940 | RBH | 0.0 | 0.0 | 0.0 |