Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0149850 | OGI:08007250 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:2856999-2857610 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCTGGCAGCAGAAGTAATCTCTTCACAACTGCGTACCGCGAACTTGACTCCATTCTACACAAGGAGAAAAATCTACCTGTGGATGATGAAGAAAAACTTACGCTAAAAGTAATTGAGAAGGTGGAGCATAAAAGGAATTGTTTCATTCATGATGCTTTCCGGCTTGCCCGAGATTTGTTATTGGCTCGGGGTTACAAGAAGATGTGGGATGTCATAATAGATGTGTGGGTAGAGATGCTATGCTTCTCCGCTGGTAGATGCCGAGGATACTTGCATGCCAAGAGCCTTGGATCAGGTGTTGAGTACCTCTCCCATGTGTGGCTCCTGCTGGCACATGCCGGCATGGAGACGTTCCCAGAGATGCTCCAGAGGAGGCAACTGTTTCACTTGCCAACAGAGGAACCTGAGGATGAAAGGGAAGATGGTGTCATCGGTCCATCCGATTCGCAAGGCTCGAAAAATCCTCACAATCTCAAGGAGGAAGGAGGACATGGTGTTGCTCCAACTGACACCTCCCAAGGGGCAGAGTCTCGCAAGGAGAAACAAGACCAGCATGTAGCTCCATCGGCTCCACAAGGTGATATAGTTGTCCCACCGGCCACCGAATAG
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| CDS seq | ATGGCTGGCAGCAGAAGTAATCTCTTCACAACTGCGTACCGCGAACTTGACTCCATTCTACACAAGGAGAAAAATCTACCTGTGGATGATGAAGAAAAACTTACGCTAAAAGTAATTGAGAAGGTGGAGCATAAAAGGAATTGTTTCATTCATGATGCTTTCCGGCTTGCCCGAGATTTGTTATTGGCTCGGGGTTACAAGAAGATGTGGGATGTCATAATAGATGTGTGGGTAGAGATGCTATGCTTCTCCGCTGGTAGATGCCGAGGATACTTGCATGCCAAGAGCCTTGGATCAGGTGTTGAGTACCTCTCCCATGTGTGGCTCCTGCTGGCACATGCCGGCATGGAGACGTTCCCAGAGATGCTCCAGAGGAGGCAACTGTTTCACTTGCCAACAGAGGAACCTGAGGATGAAAGGGAAGATGGTGTCATCGGTCCATCCGATTCGCAAGGCTCGAAAAATCCTCACAATCTCAAGGAGGAAGGAGGACATGGTGTTGCTCCAACTGACACCTCCCAAGGGGCAGAGTCTCGCAAGGAGAAACAAGACCAGCATGTAGCTCCATCGGCTCCACAAGGTGATATAGTTGTCCCACCGGCCACCGAATAG
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| Protein seq | MAGSRSNLFTTAYRELDSILHKEKNLPVDDEEKLTLKVIEKVEHKRNCFIHDAFRLARDLLLARGYKKMWDVIIDVWVEMLCFSAGRCRGYLHAKSLGSGVEYLSHVWLLLAHAGMETFPEMLQRRQLFHLPTEEPEDEREDGVIGPSDSQGSKNPHNLKEEGGHGVAPTDTSQGAESRKEKQDQHVAPSAPQGDIVVPPATE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0149850 | OsNip_08t0149850-00 | Chr08 | 2856999 | 2857610 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCTGGCAGCAGAAGTAATCTCTTCACAACTGCGTACCGCGAACTTGACTCCATTCTACACAAGGAGAAAAATCTACCTGTGGATGATGAAGAAAAACTTACGCTAAAAGTAATTGAGAAGGTGGAGCATAAAAGGAATTGTTTCATTCATGATGCTTTCCGGCTTGCCCGAGATTTGTTATTGGCTCGGGGTTACAAGAAGATGTGGGATGTCATAATAGATGTGTGGGTAGAGATGCTATGCTTCTCCGCTGGTAGATGCCGAGGATACTTGCATGCCAAGAGCCTTGGATCAGGTGTTGAGTACCTCTCCCATGTGTGGCTCCTGCTGGCACATGCCGGCATGGAGACGTTCCCAGAGATGCTCCAGAGGAGGCAACTGTTTCACTTGCCAACAGAGGAACCTGAGGATGAAAGGGAAGATGGTGTCATCGGTCCATCCGATTCGCAAGGCTCGAAAAATCCTCACAATCTCAAGGAGGAAGGAGGACATGGTGTTGCTCCAACTGACACCTCCCAAGGGGCAGAGTCTCGCAAGGAGAAACAAGACCAGCATGTAGCTCCATCGGCTCCACAAGGTGATATAGTTGTCCCACCGGCCACCGAATAG
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| Protein seq | MAGSRSNLFTTAYRELDSILHKEKNLPVDDEEKLTLKVIEKVEHKRNCFIHDAFRLARDLLLARGYKKMWDVIIDVWVEMLCFSAGRCRGYLHAKSLGSGVEYLSHVWLLLAHAGMETFPEMLQRRQLFHLPTEEPEDEREDGVIGPSDSQGSKNPHNLKEEGGHGVAPTDTSQGAESRKEKQDQHVAPSAPQGDIVVPPATE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g05410 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0149850 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0003330 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0003380 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0003350 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003330 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0003160 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0042100 | RBH | 0.6722185 | 0.981679 | 0.7746385 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0003020 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0049200 | RBH | 0.0228385 | 0.009751 | 0.0051225 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0002930 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0002970 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002900 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0003170 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0003090 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G003030 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0002910 | RBH | 0.0 | 0.0 | 0.0 |
