Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0002930 | OGI:08007250 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:2505849-2507003 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgctcaattactcaggtcttgctcaaaaggccagcgccataagcaaagaaagagatcttgaatcattcgccaaagatgctagggcttctctcatcaagagctgctctcattatcctcctcctccattacttaaggaagagagaattaattccctcatgaagcgtctccgtctgcccaacaacctgtttgtagattctacatatccattctccgatcgcctcgataaccttagatgcttctggtcacttaatgccgagctagcttactatgtgatactagatggtctctccagcatcttcaatcttctctacaccagaaataagtcagacatcaaacacgccaatgcagccacctactgctgtatgttaacatggcctcttactttggcattggcaatcccagccattggtctccttcacagcggccacaaacaagcttatagccatgaggatgtcattgtgacattcgtgatggtgtatggcacccttttgctgcacatcgtttcagcattcataatactgaagtctgcaattgacttgcatgacactgtcccgcagcaaagcctgataggatcctttgctcgcaagagaaggcacaaagggttgatagccatcacaaactggttacaatgcaaaggcctgcttgaccaatactggtgcatgaaaccctacgacaagcccatggacgtcactcgtttggtctacatgtatgtgagagatggatggacaaaatacatacaagacgccgagagctacaggaggttcaatgacaacatgggccagtgggcacttgagcgtgctcaatgtggcgagcttctaggctggagcttagagagaccattcgacgagattgtccttctatggcatgtggccacggatttctgctttatcatgcctgataaatcttaccttccaactgaattccattctccccttccttcccctagagagatgggaagagcaatctccaactacatgatgcatctgctgttcgcgaatcctgagatgttgatggctggcaccagaaggaatctcttcgaaactgcctacaaagaactcttggtcgttctaaaagatgaaaaagatctacctctaaatgatgaagaaaaactcatgccgatgataattgacaaggttaagtttaaacaggattaa
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| CDS seq | atgctcaattactcaggtcttgctcaaaaggccagcgccataagcaaagaaagagatcttgaatcattcgccaaagatgctagggcttctctcatcaagagctgctctcattatcctcctcctccattacttaaggaagagagaattaattccctcatgaagcgtctccgtctgcccaacaacctgtttgtagattctacatatccattctccgatcgcctcgataaccttagatgcttctggtcacttaatgccgagctagcttactatgtgatactagatggtctctccagcatcttcaatcttctctacaccagaaataagtcagacatcaaacacgccaatgcagccacctactgctgtatgttaacatggcctcttactttggcattggcaatcccagccattggtctccttcacagcggccacaaacaagcttatagccatgaggatgtcattgtgacattcgtgatggtgtatggcacccttttgctgcacatcgtttcagcattcataatactgaagtctgcaattgacttgcatgacactgtcccgcagcaaagcctgataggatcctttgctcgcaagagaaggcacaaagggttgatagccatcacaaactggttacaatgcaaaggcctgcttgaccaatactggtgcatgaaaccctacgacaagcccatggacgtcactcgtttggtctacatgtatgtgagagatggatggacaaaatacatacaagacgccgagagctacaggaggttcaatgacaacatgggccagtgggcacttgagcgtgctcaatgtggcgagcttctaggctggagcttagagagaccattcgacgagattgtccttctatggcatgtggccacggatttctgctttatcatgcctgataaatcttaccttccaactgaattccattctccccttccttcccctagagagatgggaagagcaatctccaactacatgatgcatctgctgttcgcgaatcctgagatgttgatggctggcaccagaaggaatctcttcgaaactgcctacaaagaactcttggtcgttctaaaagatgaaaaagatctacctctaaatgatgaagaaaaactcatgccgatgataattgacaaggttaagtttaaacaggattaa
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| Protein seq | MLNYSGLAQKASAISKERDLESFAKDARASLIKSCSHYPPPPLLKEERINSLMKRLRLPNNLFVDSTYPFSDRLDNLRCFWSLNAELAYYVILDGLSSIFNLLYTRNKSDIKHANAATYCCMLTWPLTLALAIPAIGLLHSGHKQAYSHEDVIVTFVMVYGTLLLHIVSAFIILKSAIDLHDTVPQQSLIGSFARKRRHKGLIAITNWLQCKGLLDQYWCMKPYDKPMDVTRLVYMYVRDGWTKYIQDAESYRRFNDNMGQWALERAQCGELLGWSLERPFDEIVLLWHVATDFCFIMPDKSYLPTEFHSPLPSPREMGRAISNYMMHLLFANPEMLMAGTRRNLFETAYKELLVVLKDEKDLPLNDEEKLMPMIIDKVKFKQD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0002930 | OsLima_08g0002930.01 | Chr08 | 2505849 | 2507003 | + | NAM | ||
| CDS seq | atgctcaattactcaggtcttgctcaaaaggccagcgccataagcaaagaaagagatcttgaatcattcgccaaagatgctagggcttctctcatcaagagctgctctcattatcctcctcctccattacttaaggaagagagaattaattccctcatgaagcgtctccgtctgcccaacaacctgtttgtagattctacatatccattctccgatcgcctcgataaccttagatgcttctggtcacttaatgccgagctagcttactatgtgatactagatggtctctccagcatcttcaatcttctctacaccagaaataagtcagacatcaaacacgccaatgcagccacctactgctgtatgttaacatggcctcttactttggcattggcaatcccagccattggtctccttcacagcggccacaaacaagcttatagccatgaggatgtcattgtgacattcgtgatggtgtatggcacccttttgctgcacatcgtttcagcattcataatactgaagtctgcaattgacttgcatgacactgtcccgcagcaaagcctgataggatcctttgctcgcaagagaaggcacaaagggttgatagccatcacaaactggttacaatgcaaaggcctgcttgaccaatactggtgcatgaaaccctacgacaagcccatggacgtcactcgtttggtctacatgtatgtgagagatggatggacaaaatacatacaagacgccgagagctacaggaggttcaatgacaacatgggccagtgggcacttgagcgtgctcaatgtggcgagcttctaggctggagcttagagagaccattcgacgagattgtccttctatggcatgtggccacggatttctgctttatcatgcctgataaatcttaccttccaactgaattccattctccccttccttcccctagagagatgggaagagcaatctccaactacatgatgcatctgctgttcgcgaatcctgagatgttgatggctggcaccagaaggaatctcttcgaaactgcctacaaagaactcttggtcgttctaaaagatgaaaaagatctacctctaaatgatgaagaaaaactcatgccgatgataattgacaaggttaagtttaaacaggattaa
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| Protein seq | MLNYSGLAQKASAISKERDLESFAKDARASLIKSCSHYPPPPLLKEERINSLMKRLRLPNNLFVDSTYPFSDRLDNLRCFWSLNAELAYYVILDGLSSIFNLLYTRNKSDIKHANAATYCCMLTWPLTLALAIPAIGLLHSGHKQAYSHEDVIVTFVMVYGTLLLHIVSAFIILKSAIDLHDTVPQQSLIGSFARKRRHKGLIAITNWLQCKGLLDQYWCMKPYDKPMDVTRLVYMYVRDGWTKYIQDAESYRRFNDNMGQWALERAQCGELLGWSLERPFDEIVLLWHVATDFCFIMPDKSYLPTEFHSPLPSPREMGRAISNYMMHLLFANPEMLMAGTRRNLFETAYKELLVVLKDEKDLPLNDEEKLMPMIIDKVKFKQD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0149850 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g05410 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0149850 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0003180 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0003230 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0003200 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003190 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0003010 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002880 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0047200 | RBH | 0.3197365 | 0.4270695 | 0.6321545 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0002120 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0002970 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002780 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0003030 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0002950 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G002920 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0002790 | SBH | 0.0 | 0.0 | 0.461444 |
