Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0148600 | OGI:08007450 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:2786227-2792182 | ||||||||
| Gene Symbol | DCL3A, OsDCL3a, - | ||||||||||
| DNA seq | ATAAAAAACTATTGGAATAATTCATTAAGAAAAAGGTTAGATGGTTACAATGCCACAAATATTCTGCCAGTTCAACTACACGTTGTTTCTAAATATTTCCAAAAGTTATCGAAGCTATCACCTACTAAGTTAAAAAAAAGAGCTGATCATTTATTCTACATATCACTTGGGAATAGTTAACAATTATCCTAACCCTCATTGAGGGGCTTCCAATTTAAAAGAATCTCAATTCTTGTTTTGGATGCAAATTTGTGAGCAATGATGACTTCATGTGAGGCATCAGTAGATGATGATTGTACTATTGATGTAGCAACATGCTCAAAACAGTTTCTTAAAGGCACTGAAAACAATTTCCGGAAAGGGAACAGGGTTAGGGAATCATTTTGCTTAATGAGAAAAGCCTTGATATTAACCAGGAATCAGAAAAAATGGGCCCATTATATACCAGCAAAGACAACGCGAAGCAGACATACCTCATTATAGGCTTCACCATACTCCTCCATACGAAATGATGAAACAGAAAGAGCTGCAGCGAACATATATTGCCAGGTAAGTGCATTTCAAGTCGATTCAATGATCTACCTCCGGACAGTCATAAGAATTACAAAACACAAAATGGGAGATGCATGTACATTGTAGTGTGTTATAGAACACATTGGATATCACAGCTTTATTTTTCTGAAAAGTTCTAATTATCTGGAAACTACACCAAGAACAGTGACTGATGACTGCAAGCACTATTAAACTGAAAGCACTATCAAAATTGTATATAATCTAGAATTTGAAATGCCTCATTTCAGCCATATCGCTATTTATGTAGAACTGCAAGCATATTTTTTTACAATCAAAACTTACTTCATCGAATATATAGAAAAGGTACATAGGCACAATATCTTCTATTTAGACGCTCAATTTGAAAAGCAGAACACAGTAGTGCCCTATAAAGATAATATGTCTAATTCTAGTGAGTCTAGAAGTGTTACTGGTCCTGAAGAGATAACTGAGTATTTCTTAATAAGTCTCTGAATTTAGAACCCAAGACCAAATTGTAGAACAGAGGCATTAATAGTTTTTTTCTCGAAAAAGAGGGCAGGAGGGCTGCCTCTTTTCATTAATATAGGAGGAGAAAAGAATTCATATACAGGCGTTTGTGTATGTTACATGAGGTCTACTCTCGCGACAAAGCTGGTGTATACTGAATTCTGTTGCCAATCATAAAAATCAGGCAAACCAAGTTATGATGTGTCAATGCTTGTGCCAAAGAATGCAAGGACAATTAAATTATGTTGGATATAAGAAACTGATTCATACAAACAGAGGTGAAATAAATCAACTTACATGTGTTGGTTGTATACTCATCAAGATGATTGAAAGGATCCATAATCCAAACCTTAATTCGTTGGTATGATTGGATTGGATTTACATAGGACGCAAATGACCCCAGAGACGAGCATCAAATCCCTCAAAGAGTAAAAAATCCCAAAAGGAAGTTTATCTTAATTAAGTAAATGTAAGGCATAAATAAACAATATAGAATTATTCTTAGCTTGAAATTTATATTGACATTCTGTCGGATATATGCAACATGTAGAAACTTACATAGGCACACCAAACCATATCTCCCTAAAAGATGACTCTTCGACAACTATTGGTATGATATCCATCTAGATACCTCAAAGAAGATGGGGATGCCAAGAATAAACAACATATCTACATATATGAGCACCTACATAAAATGGAAAGGGAGAAATACCAAGATCGTAGGCAAGCCAGGATAATAGTCATCGCTTCAACGACATTAATCATCCTGCTTGATTTGAAAAAAGAAAGAATCAATTGTTTAGTGCCCAAGAATTATACTAAAAGTGAGGCTCAAATCAGAGCAAAAAATATTTTTACTAAATGGATTACCAATATAACAAAGCACTATTCTAGGTACATACATGCCAGCACATACTCTGATCATAAATTGGTTGTGTCAAAGAGCAAGAGGGGTTAGCAGAGGAGGCAGAAAAGAAAGGATAAGGTGAACTATTTCCATTTAAGAATATATTGCCACTCATCTGCACCAGAAGAATTATTGCAGGTAGATATCTATGCGCAATAATTAGTAAATTAAAAAACTGCAAGAATTATGCTAGGATGATTTTGTAATCAAAATGATATGAAAGATAAAATAGATGAGTGCTATTGGAGAGGCAAGTCGGGCCATTGGTACCTATCTTTCTGTGCTGAATTCTTTGATTTAGAAATTCGTAATGGTTGGACACTTCTATCTGTCTTGCATCAAGGAATGCATCCCATATTCCCATTTTGATGTTCTGTAAAATAAATGTGCAGTTCTGACCACGTATTAGTACAGATATTTATGAAGTAAAGAGAGAGGGAAGGAGAGAGCAAGATGCTAAAAATGCAAATCGTTTAGTTTTGTCATGTAGAACAGATAACACATCCTATGTTGTACTGTTTGGTTGGTTACATTTGCTTGCATGTAATGTAAGTTACTGTGAGGTACTAAAAAACCGTGCGAAACATAGCAGATTAGATTGCCCTTCACAGCAATCAAATAAGAAATTCCAAAGCAGGAATAAAAATCTGCAACTCATGAGAAAGAACCTGTATATATCCCCAACTGTATCTGAAGCATGCTTTTTGCAGACCTTAGAAACTACAAGATGCATAGTCACCTGCTCGAACTCCAGAAAAAAGTAAATTCTATTAAAAATAACCTAAAAATATGTAGGATTGGAGGAAAGGGAGATGATACCTGTGGAAGCTAGAAGGGGTTGATGGTGATGGCGGCTGAAGCAGATCAAGGAAACAGACAGTACTTATCTCTTTATCGGGCCACACGATCTGCTCAGCCGTGAGGCGTAAGGCGAGGCAGTGGAGCAGCTTGGGGGTGGACTTGGCAGCGATGTGGGAAGCGAAGGCACCGTCTTGGCGCTCGCGAGCAGCTGTAACATAAGTAGCTAAAGCCAATGAATATAACAAATACCTCACTTGCTAAAACAAGACCAACATCATCAAGGCAGTAGCAAATTTTTGCTAAAATTAGAAAGGCGTCTCCTTGATTCTTTTGTTATATCATCAGCATCTTCATACATGTAGCTTTGCTTATTCTGCAACTCTGTTATCAATGCATCATACTGCATATACAAAAAAGTGTGTGTTCTTAGAAACATAAAAAATGCTGAGGTGCAAACTTTGATGACAAATTCGATCAATATAGCAGAGAAAAAAAGAGATAAAGAAAACCTTGGGACATAAAACTCCCAATTCTTCACTCAAATCTTCAAAACAAATTGTTTTCGGGTCATAGAATCTGTACATTTCTTTTGCAGAAGGAACGCAAAGCTCTATCTCTTCTCTATCTGAAACTCTGTAGATCTGCTAAAGATAAAAAATGATGAGATTGAAAGTACGCAGACGAATAACATTTTTAAAAGGGGTCATATGTGTATCCCAAAATGGCATGGGTAGAACAGATAGATATATATCACCTAAGCTCTCAAAACAAACACAACAGTCAAACAATTTGCATTTGGTTGAAAACTACAATCTGTCAATAACTGGAATTCAGGTACGTATATATCCTTGCAGTTCAATAGACAAAGTAGAATCGTGTAGTAATCAGAACTAACATGTCCTGTATAATCTAACCCAGCTTATTCATATAATATGTGTGGCAGAAAAGGAAACTGAACATACCTTGGCATCTAACAGGTTTTCCAATTCACAGAACTGACCTTCACAATCCAAATGAGAAGAGACACCTGCAAAGACAACCATGAAAAACTCAAATCATCCAATAAGATTTACTAAGTGATGGGAATAAATCAAATCTGCCAGAAATATTGGCATTTATGAACTCTATGGCCAAAGTGAAACTGGAGAATATGTGCGTGATCATTGTTCCTGGATATTTCTCTGGGATGGCAGGTCAGAATTAACACATATCCTAAATGCTACTGTTTACAAGAAATTTATTGCTGATCTTCTCTAACTTATGCATCTCTGAACCAGAGTTGAAACAAATGAGGTTTAACATCCCATCCTCCATCGAGCCCCCCGGGCACCTACCCACCCACTCACAAAAGAAAAGAAGAAGAAGCATTCTATATAGTTCTTGCAGAAAACTGAATACTTCCCTTTTCTTATAACAGGTGATGCTGTCATACCAAACACACTTGGCTTATGTTCTGATTTGTAATAGAACTCCTGAGATTGTGATAAGTTATAACTTATGACAAACACAAAAAAGAAAAACCTGAATGCAAATATTCATGGTAGTGTCAAAACAAAAAAAAAAACATGATAAGATGGTATTTCATAATACCTTCATTACAAGTATAAGGGTGGTTTCCAGTTGCATGATGGCATTCATAAAATATCATGAGACTAACCTTGTCCAAGATCAAGAAAGCATTGCGTAAAGCTTGTAGGAACACCTGTGGTGTCATGACCATGACCTGTAATTTCATTATTATAAGTGCTGAAAGGATCAACAAGTAGATAGGATCATAGGACAGGGGAAAAATATAAGTTAAGAATATCCTAGTGTAATATAGTGAACAGAAGACTGCAGATCATAACTGCTGCTAGCATGGAGTGAATATTTTCTTTAGCACATATGATGAATCAATGAGCCTTTAAAAAGCATAGAATAAATGCTTGCCTGATATTTTGAGATTTGCTCTTGCCATCTTGGACCTGTCCATTGATCAACCCCCTTTGCGCCATGACATTGTTCCACCTCAAAATCTGTGAGTTTCAGTCACCTCGCATTGCTGTGGTGAAAAATAATGTCAGTATAAATTATGTTACAGTTAGGGTAAAACGAACAGTCTACAGACTCTGGTATAACCTGTGCAACAAGTTGAACTGTTGGTGCAAGAAATATGATGACTTTTCCAGCATTCTTTGTTCTATTTATCTTTCCAAACTCCTTGATAAACATCACAGCAATCATTATCTTCCCAGCTCCTGTGTCAAGCATCGCAATCGTGTTTCTCCGCATTGCAACCTCATAGACATCAAGCTGATATCTGACCAATCTCAGCATCACAAAGCAATGTCACAGGATTGTACTCTTTTTCTGATCATATAAGAATATAAGATAGTGACTGTGAAAAGGAGAACTCTGCAGAACCTTCTGTGTGTGAAAGCTTGACACTCTCTCTTTTGCCGTTTCTGTTTGCCTGCTTCTTCATGTTCCTGAGAAGATGATTCCGGGTTCATGTTTACTGCCATTCGAACAAAAAAAATTACCAAGTGAGGTCATGACAATTCACCATTGGGAATATTCACACCCAAATAGATCGAAATTAGTAATCCTCGAAGCACGAAAGGATAAATATGAAAAAAAAGAAAAAGAAAACAAGTGTTGACAAATAATAAATCTGATTCGCGTCAGTTAGCTCGCAAACCCTTCCCAAAAACACTTAGAAAAAACGTGGGTACCATCGGCGACGACCATCTCCTCGCTGGATCTTGAGCTGCGAATGAGCGGATCGAATAGCGGGCCTGGCGTCCGCGATGGTCTTTGGCATGCAGATACAGGTGGAGCCGGCGCACCTCGTCCCCCGCCGACGAGGGCTCGTACTGCGATGCAGACGCAGCAGCTAGCTAGCGCTGGAGATTTGGTCCTAGCTAGAGCGCCGTCGCCCAAACAAACAACTCCTCATCTGCCAGACGCTTGCTCTACATAAATCAAGGGCTCGCCGGAACGAGGAGGTTAGGGTAGCGGATGTGGCCTGCCTGTCGCTGGCCGATTTCCTCAATCACGCCGGCCCCGCCTCCGTGCGACCTGCTCCTGACATCCATCTGCGCCTGCGCGTGCTCCTGCTCATGTTCACTTCCTCCTCCAGAGCCTCCACCGGCGTCCAGGCCAGATGGGAGGGGCGGAGGACGGAGAGGTAGGGGAGGGGAAGAGGTGGTGCCGCGGAAGTCGAGT
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| CDS seq | ATGGTCGTCGCCGATGTAAACATGAACCCGGAATCATCTTCTCAGGAACATGAAGAAGCAGGCAAACAGAAACGGCAAAAGAGAGAGTGTCAAGCTTTCACACACAGAAGATATCAGCTTGATGTCTATGAGGTTGCAATGCGGAGAAACACGATTGCGATGCTTGACACAGGAGCTGGGAAGATAATGATTGCTGTGATGTTTATCAAGGAGTTTGGAAAGATAAATAGAACAAAGAATGCTGGAAAAGTCATCATATTTCTTGCACCAACAGTTCAACTTGTTGCACAGCAATGCGAGGTGACTGAAACTCACAGATTTTGA |
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| Protein seq | MVVADVNMNPESSSQEHEEAGKQKRQKRECQAFTHRRYQLDVYEVAMRRNTIAMLDTGAGKIMIAVMFIKEFGKINRTKNAGKVIIFLAPTVQLVAQQCEVTETHRF |
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| Function | Endoribonuclease Dicer homolog 3a [UniProtKB/Swiss-Prot:Q5N870] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0148600 | OsNip_08t0148600-01 | Chr08 | 2786227 | 2792182 | - | RAP2018-11-26 | ||
| CDS seq | ATGGTCGTCGCCGATGTAAACATGAACCCGGAATCATCTTCTCAGGAACATGAAGAAGCAGGCAAACAGAAACGGCAAAAGAGAGAGTGTCAAGCTTTCACACACAGAAGATATCAGCTTGATGTCTATGAGGTTGCAATGCGGAGAAACACGATTGCGATGCTTGACACAGGAGCTGGGAAGATAATGATTGCTGTGATGTTTATCAAGGAGTTTGGAAAGATAAATAGAACAAAGAATGCTGGAAAAGTCATCATATTTCTTGCACCAACAGTTCAACTTGTTGCACAGCAATGCGAGGTGACTGAAACTCACAGATTTTGA
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| Protein seq | MVVADVNMNPESSSQEHEEAGKQKRQKRECQAFTHRRYQLDVYEVAMRRNTIAMLDTGAGKIMIAVMFIKEFGKINRTKNAGKVIIFLAPTVQLVAQQCEVTETHRF |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0148600 | OsNip_08t0148600-02 | Chr08 | 2787750 | 2792182 | - | RAP2018-11-26 | ||
| CDS seq | ATGGTCGTCGCCGATGTAAACATGAACCCGGAATCATCTTCTCAGGAACATGAAGAAGCAGGCAAACAGAAACGGCAAAAGAGAGAGTGTCAAGCTTTCACACACAGAAGATATCAGCTTGATGTCTATGAGGTTGCAATGCGGAGAAACACGATTGCGATGCTTGACACAGGAGCTGGGAAGATAATGATTGCTGTGATGTTTATCAAGGAGTTTGGAAAGATAAATAGAACAAAGAATGCTGGAAAAGTCATCATATTTCTTGCACCAACAGTTCAACTTGTTGCACAGCAATGCGAGGTGACTGAAACTCACAGATTTTGA
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| Protein seq | MVVADVNMNPESSSQEHEEAGKQKRQKRECQAFTHRRYQLDVYEVAMRRNTIAMLDTGAGKIMIAVMFIKEFGKINRTKNAGKVIIFLAPTVQLVAQQCEVTETHRF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr08 | 2788913 | 2788994 | - | OsNip_08t0148600-01 | OsNip_08t0148600-02,OsNip_08t0148600-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.652339 | 0.217238 | 0.226980 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0909200 | RBH | 1.436198 | 0.943200 | 4.246792 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g68120 | SBH | 0.982457 | 0.529189 | 1.103648 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0148600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0003270 | RBH | 0.466282 | 3.362480 | 6.003467 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0003310 | RBH | 0.188495 | 1.045697 | 2.609390 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0003280 | RBH | 0.0 | 2.930812 | 11.663121 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003270 | RBH | 0.062979 | 0.158312 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0003100 | RBH | 2.072707 | 9.051011 | 5.458682 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0043500 | RBH | 2.076326 | 8.156028 | 25.363858 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002960 | RBH | 0.066208 | 0.172508 | 1.119553 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0048600 | RBH | 5.263423 | 45.5559175 | 8.7593775 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0002980 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0003020 | RBH | 0.355895 | 8.450194 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002840 | RBH | 3.462776 | 9.985940 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0003110 | RBH | 0.223693 | 0.348852 | 0.594273 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0003030 | RBH | 0.205111 | 1.296884 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G002960 | RBH | 0.334971 | 0.294512 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0002840 | RBH | 0.000000 | 0.000000 | 1.910511 |
