Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_08g0002840 | OGI:08007450 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr08:2459316-2466897 | ||||||||
| Gene Symbol | DCL3A, OsDCL3a, - | ||||||||||
| DNA seq | TCAAGGCAGTAGCAAATTTTTGCTAAAATTAGAAAGGCGTCTCCTTGATTCTTTTGTTATATCATCAGCATCTTCATACATGTAGCTTTGCTTATTCTGCAACTCTGTTATCAATGCATCATACTGCATATACAAAAAAGTGTGTGTTCTTAGAAACATAAAAAATGCTGAGGTGCAAACTTTGATGACAAATTCgatcaatatagcagagaaaaaaagagataaagaaaaccttgggacataaaactcccaattcttcactcaaatcttcaaaacaaattgttttcgggccatagaatctgtacatttcttttgcagaaggaacgcaaagctctatctcttctctatctgaaactctgtagatctgttaaagatAaaaaatgatgagattgaaagtacgcagacgaataacatttttaaaaggggtcatatgtgtatcccaaaatggcatgggtagaacagatagatatatatcacctaagctctcaaaacaaacacaacagtcaaacaatttgcatttggttgaaaactacaatctgtcaataactggaattcaggtacgtatatatccttgcagttcaatagacaaagtagaatcgtgtagtaatcagaactaacatgtcctgtataatctaacccagcttattcatataatatgtgtggcagaaaaggaaactgaacataccttggcatctaacaggttttccaattcacagaactgaccttcacaatccaaatgagaagagacacctgcaaagacaaccgtgaaaaactcaaatcatccaataagatttactaagtgatgggaataaatcaaatctgccagaaatattggcatttatgaactctatggccaaagtgaaactggagaatatgtgcgtgatcattgttcctggatatttctctgggatggcaggtcagaattaacacatatcctaaatgctactgtttacaagaaatttattgctgatcttctctaacttatgcatctctcaaccagagttgaaacaaatgaggtttaatatcccatcctccatcgagccccccgggcacctacccacccactcacaaaagaaaagaagaagaagcattctatatagttcttgcagaaaactgaatacttcccttttcttataacaggtgatgctgtcataccaaacacacttggcttatgttctgatttgtaatagaactcctgagattgtgataagttataacttatgacaaacacAaaaaaaAGAAAAACCTGAATGCAAATATTCATGGTAGTGTCAAAACAAaaaaaaaaaaaacatgataagatggtatttcacaataccttcattacaagtataagggtggtttccagttgcatgatggcattcataaaatatcatgagactaaccttgtccaagatcaagaaagcattgcgtaaagcttgtaggaacacctgtggtgtcatgaccatgacctgtaatttcattattataagtgctgaaaggatcaacaagtagataggatcataggacaggggaaaaatataagttaagaatatcctagtgtaatatagtgaacagaagactgcagatgataactgctgctagcatggagtgaatattttctttagcacatatgatgaatcaatgagcctttaaaaagcatagaataaatgcttgcctgatattttgagatttgctcttgccatcttggacctgtccattgatcaaccccctttgcgccatgacattgttccacctcaaaatctgtgagtttcagtcacctcgcattgctgtggcgaaaaataatgtcagtataaattatgttacagttagggtaaaacgaacagtctacagactctggtataacctgtgcaacaagttgaactgttggtgcaagaaatatgatgacttttccagcattctttgttctatttatctttccaaactccttgataaacatcacagcaatcattatcttcccagctcctgtgtcaagcatcgcaatcgtgtttctccgcattgcaacctcatagacatcaagctgatatctgaccaatctcagcatcacaaagcaatgtcacaggattgtactctttttctgatcatataagaatataagatagtgactgtgaaaaggagaactctgcagaaccttctgagttctgtgtgtgaaagcttgacactctctcttttgccgtctctgtttgcctgcttcttcatgttcctgagaagatgattccgggttcatgtttactgccattcgaacaaaaaaaattaccaagtgaggtcatgacaattcaccattgggaatattcacacccaaatagatcgaaattagtaatcctcgaagcacgaaaggataaatatgAaaaaaaaagaaaaagaaaacaagtgttgacaaataataaatctgatgcgcgtcagttagctcgcaaacccttcccAaaaacacttagaaaaaacgtgggtaccatcggcgacgaccatctcctcgctggatcttgagctgcgaatgagcggatcgaatagcgggcctggcgtccgcgatggtctttggcatgcagatacaggtggagccggcgcacctcgtcccccgccgacgagggctcgtactgcgatgcggacgcagcagctagctagcgctggagatttggtcctagctagagcgccgtcgcccaaacaaacaactcctcatctgccagacgcttgctctacataaatcaagggctcgccggaacgaggaggttagggtagcggatgtggcctgcctgtcgctggccgatttcctcaatcacgccggccccgcctccgtccgacctgctcctgacatccatctgcgcctgcgcgtgctcctgctcatgttcacttcctcctccagagcctccaccgtcgtccaggccagatgggaggggcggaggacggagaggtaggggaggggaagaggtggtgccgcggaagtcgagtggtgagtttgcgtgcacgcttcgtcctttccttctccaacctggagtaggcgtatagccgaccggtgaggcccatatctatcaattcccgcgttcgtttcttcgatgtatatagtattaaatgtataaaaaaagtaattacatagtccgctaagaaattatgagacgaatattttaagcctaattgcaccatgattcgataatgttgtgctacagtaaatatttgctaatggatgattaattaggcttaataaattcgtcttacagtttcctaatttgttttgttattatattacgtttaatacttcaaatgtgtacatgtatatatccgatgtgatatgtaagggcaaaatttttagggtctgtttaagttcccatgaaaaaacttttcacccttagaactaaatagggcctaaatacggcatgcaaaacgacaaattcattaagactaattgagttttaattatttttaataataattgagttttaattactacaaaaagtaaattgtatttgtggtacacaaacttattaggtcggtattatttactacataaacttataaaatgctctttcgtgcaaacgaggataaaaataatttggcgatgttaattttataaagctgatattgattagaatatgacgtgcatacgtgtagtgagtatgcacaagacatgcaatctttataattttgctatgtactttatccttcttcatggatttcttctttcgtatatttctaacacttatataattgctcggTtttttaatctttttctactatcactatatcctattatttttttattgaagaggtgtatgttgtcagggttatggataccacataccaaatagtagttgactaaatctcggcaggacccaccacataccatgtcttatacgaaaactgtcagggttacggataaggtataccctctactcttggatatacgtcgtgtactggtatggtatacccgtgcgtatacggacattctttgtacacgttaaggaaattcatcacggagtccacggatggaaggagtaccattcggatagaactgggtcgtaacagtatcgtataggctccgatgtctccgagttctacttggagaccaattgacctgcggtataaaagggacccccgggaggacctaaggcatcgaatctcaccaccaacacaaccaccacagcctacgaagtcggagccttcaggagcctagtcgccggggtgatctagtcgaaccaactcaactacagtctcgtcggtatcatcgagttctgctattccctttgtaatatgtggttttactatataatcccataccaactggattagggctattacctatcaaggggcctatcaatgggagcagtgcagcacgccagtgcggctagtgtgaatctgtgaaacctttcgatcaagtcggctggcaccatggagtttaaacggtcgcgacttggttgataaaacccttcaagaaatcgcatgttcttttgccatggattgagaaaggcatggatttacgcctcacacatgttttctttagtagtggcatggactttcgccacactgatctttagatcatcattaatctaatgtctggtccgaagaatgaatcccgttttcggcatggatttgcgccacaatattcttgacagttcatcattggtcttgagAaatatatatatgtttacagggggcatgtagtgttgcctcaccattctttacactggcattaatctacagccaggccggtttaatgaataaatcatcattttggcatggattcgcctcaaatattcttaaaaccattcatgaagggttttaagaaatatataattgtttatcgaaggcacgtattttcgcctcacaattcttcagactagctaacatgtgtcatccggctagtttgaagaatgaatttccggcatggaccttcacctcaaatatccttgagactagttgtcattgtcttaagaaatataaattttatctggggcatatacttttgcctggcaattcttcatgctggtcttgatcccttgaagaataaatttttggcatggatttctgccttaaatattcttgacaccatttgtacttggtcttagaagttatattttatcgatggcactgatttaagcctcacatattcttaattccttataccctgacattaatatatgtctccggcctgaaaatcaatttcttattccttggacatgaactttcgtctcacttgttcttaaaagaactttagactccggtatcaatatgtctcccagatgactattgatttttggtacatagcgatggatgtgccgctacgcatattttgggagcagtgcaacacgccagtgcggccagtgtgaatctgtgaaacccttcaacccatccagctgatatcgtggaatttttttaacaatcgtgtgtgggttaataaaattctctccggacacggcatgtttgtttccctgtggccgggacagattatggcatggatattcgcctcacatatttactctagaccccatcaagaatgcgtaggtctgaggagtattttgttaatataggcatggttgttcgcctcatccttttgctttggatcttatcaatcatatagaggtccaagggatattttgttaataatggcatggttgttcgcctaatccattaatttgctttggaccttatcagtaatatataggcccaaaggatatttgttaacaatggcaagggtgttcgcctaattaatttactctagacctcatcacgaatatacaggtctaaagaatgattttttttacaatggcatggatttttttgcctcatattctgttaattcattagacgctggcatagatttattttgccccagtgcatactggtggactatataccatagtgaaaattcatacagtcctttattgcaaaattttggtggcataatctacaactaccgtgagatatgccctagtagaagggattaaatgtctttaagcagtatggcagtagctacatgcgcttcttcaacatagaaaaaccaccaagttcgtcttggttgtttattcagtgcttgaactctgcttgcagtatgagattaaaaaaaattattatggttcctcagaaaaaaaggaaaatttcaccaagctaaatccgatctgctccgcgctcggacttaacttggtgagggggcatttgttcgatgagattttgtggacttctctaaaataaattatgaaaatgatttgtgcataggaactgtagttaaagcactgatctccaaggtacacaagaaatactgggctcctgtgcatttgcaggtgattaatttgacgtgtgcattctataattattttaaaaaggggaattagtgcttgattacactggattaccggcagcgggcaaacatcaatactgcaatgaaattagaaaggaaaccatgcatctacctaggcccactggtcagccagcatgctgatcaatataaaattaatgtcgacaaccaaatataaatacaagttagtgtatctgctcttgatggaataatttcaatgcatcttctggcgaatggaagtatgccaccacacaatcattagtagatggaaaattatcacgttgtttcctattggaatgcaacaggaagcttcctggttgagcatgcatggtaattaagcagccaaaatggcaacctttatctctgcaatccagcaaaccgacgtccggtcacatggcaatatatcagtagtaccgtcattcatctactataaagggactgcttatgcctcatttggagagggggcctacaccatgagatgaatacacacatagcagagggagacagaagagagaaatacagaggcatcgggggcagcagagggaggatgcaggcaggagccgaaggcctgcaccttcacgccgccgcagccgccgccgtcaggcgctgcgccatgcccagccttggcagtagccagtagagcccaacacacacacacatgaaagacagagaaagagaggtacacgccatttggccggagtacctcggcgtccggcgtgaacgcgtgagtcggtgacgttggccgcagcacctcggcttccggcgaggaggcgcgctagggaggagacgatcgctgggagaagcaagacgataacagcccaactcactgccatggttaactagcctatattttcttgtcattcctctgtttcatttcagtgcatgcatgccgggacaatgttcctcagcgggggaggcgtcggatacaccaccatcgccatggagttgccgggccaaccgatctgtcgacatcgtccgctggtctccgtcaaggttgagacgacgttcctgcaaggcgcggcgatgtcgccgagatgcttggacgtcgtcgccttaccggtcgcggcctcttctccgcaacgtcatcgacttccgctcgccctcatcaacgctgctatcttctacacacattttcttgctgcttgaagagaaccccgtcggagcgtcgctactcggtgcccgcaaggcgtcatcagctccggctgcgtcccgaaccatctcgctggagttaccgtcgacaccgctgagccacccaaatccatagacggcgaggcgttgccagctaacgctcgtccccgtcat
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| CDS seq | atgacggggacgagcgttagctggcaacgcctcgccgtctatggatttgggtggctcagcggtgtcgacggtaactccagcgagatggttcgggacgcagccggagctgatgacgccttgcgggcaccgagtagcgacgctccgacggggttctcttcaagcagcaagaaaatgtgtgtagaagatagcagcgttgatgagggcgagcggaagtcgatgacgttgcggagaagaggccgcgaccggaacatgaagaagcaggcaaacagagacggcaaaagagagagtgtcaagctttcacacacagaactcagaagatatcagcttgatgtctatgaggttgcaatgcggagaaacacgattgcgatgcttgacacaggagctgggaagataatgattgctgtgatgtttatcaaggagtttggaaagataaatagaacaaagaatgctggaaaagtcatcatatttcttgcaccaacagttcaacttgttgcacaggtcatggtcatgacaccacaggtgttcctacaagctttacgcaatgctttcttgatcttggacaagGTTTTTCTttttttTgtgtttgtcataagttataacttatcacaatctcaggagttctattacaaatcagaacataagccaagtgtgtttggtgtctcttctcatttggattgtgaaggtcagttctgtgaattggaaaacctgttagatgccaagatctacagagtttcagatagagaagagatagagctttgcgttccttctgcaaaagaaatgtacagattctatggcccgaaaacaatttgttttgaagatttgagtgaagaattgggagttttatgtcccaagTATGATGCATTGATAACAGAGTTGCAGAATAAGCAAAGCTACATGTATGAAGATGCTGATGATATAACAAAAGAATCAAGGAGACGCCTTTCTAATTTTAGCAAAAATTTGCTACTGCCTTGA
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| Protein seq | MTGTSVSWQRLAVYGFGWLSGVDGNSSEMVRDAAGADDALRAPSSDAPTGFSSSSKKMCVEDSSVDEGERKSMTLRRRGRDRNMKKQANRDGKRESVKLSHTELRRYQLDVYEVAMRRNTIAMLDTGAGKIMIAVMFIKEFGKINRTKNAGKVIIFLAPTVQLVAQVMVMTPQVFLQALRNAFLILDKVFLFFVFVISYNLSQSQEFYYKSEHKPSVFGVSSHLDCEGQFCELENLLDAKIYRVSDREEIELCVPSAKEMYRFYGPKTICFEDLSEELGVLCPKYDALITELQNKQSYMYEDADDITKESRRRLSNFSKNLLLP |
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| Function | Endoribonuclease Dicer homolog 3a [UniProtKB/Swiss-Prot:Q5N870] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0002840 | OsNaBo_08g0002840.01 | Chr08 | 2459316 | 2466897 | - | NAM | ||
| CDS seq | atgacggggacgagcgttagctggcaacgcctcgccgtctatggatttgggtggctcagcggtgtcgacggtaactccagcgagatggttcgggacgcagccggagctgatgacgccttgcgggcaccgagtagcgacgctccgacggggttctcttcaagcagcaagaaaatgtgtgtagaagatagcagcgttgatgagggcgagcggaagtcgatgacgttgcggagaagaggccgcgaccggaacatgaagaagcaggcaaacagagacggcaaaagagagagtgtcaagctttcacacacagaactcagaagatatcagcttgatgtctatgaggttgcaatgcggagaaacacgattgcgatgcttgacacaggagctgggaagataatgattgctgtgatgtttatcaaggagtttggaaagataaatagaacaaagaatgctggaaaagtcatcatatttcttgcaccaacagttcaacttgttgcacaggtcatggtcatgacaccacaggtgttcctacaagctttacgcaatgctttcttgatcttggacaagGTTTTTCTttttttTgtgtttgtcataagttataacttatcacaatctcaggagttctattacaaatcagaacataagccaagtgtgtttggtgtctcttctcatttggattgtgaaggtcagttctgtgaattggaaaacctgttagatgccaagatctacagagtttcagatagagaagagatagagctttgcgttccttctgcaaaagaaatgtacagattctatggcccgaaaacaatttgttttgaagatttgagtgaagaattgggagttttatgtcccaagTATGATGCATTGATAACAGAGTTGCAGAATAAGCAAAGCTACATGTATGAAGATGCTGATGATATAACAAAAGAATCAAGGAGACGCCTTTCTAATTTTAGCAAAAATTTGCTACTGCCTTGA
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| Protein seq | MTGTSVSWQRLAVYGFGWLSGVDGNSSEMVRDAAGADDALRAPSSDAPTGFSSSSKKMCVEDSSVDEGERKSMTLRRRGRDRNMKKQANRDGKRESVKLSHTELRRYQLDVYEVAMRRNTIAMLDTGAGKIMIAVMFIKEFGKINRTKNAGKVIIFLAPTVQLVAQVMVMTPQVFLQALRNAFLILDKVFLFFVFVISYNLSQSQEFYYKSEHKPSVFGVSSHLDCEGQFCELENLLDAKIYRVSDREEIELCVPSAKEMYRFYGPKTICFEDLSEELGVLCPKYDALITELQNKQSYMYEDADDITKESRRRLSNFSKNLLLP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 1.910511 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0148600 | RBH | 0.652339 | 0.217238 | 0.226980 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g05320 | RBH | 0.489443 | 0.145260 | 0.096986 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0148600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0003270 | RBH | 0.466282 | 3.362480 | 6.003467 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0003310 | RBH | 0.188495 | 1.045697 | 2.609390 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0003280 | RBH | 0.0 | 2.930812 | 11.663121 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003270 | RBH | 0.062979 | 0.158312 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0003100 | RBH | 2.072707 | 9.051011 | 5.458682 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0043400 | RBH | 1.6659475 | 5.811234 | 21.0054415 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002960 | RBH | 0.066208 | 0.172508 | 1.119553 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0048500 | RBH | 4.5900325 | 34.806742 | 8.858448 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0002980 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0003040 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002840 | RBH | 3.462776 | 9.985940 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0003110 | RBH | 0.223693 | 0.348852 | 0.594273 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0003030 | RBH | 0.205111 | 1.296884 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G002960 | RBH | 0.334971 | 0.294512 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
