Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0112000 | OGI:07010130 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:636209-643929 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAAAAACTATGGTGTCAAGAGTAGCATGCTTGAGTGCTTAGGAATACAACAATATTTTTAGATGAAAGATGAAGGTTGAAAAATCATTAGTTTACAAATGCAGAACTTCCTTTTTTTCTCCAACCCACCTCACTGTTTTGCTAATGACATGATGATTGGAGGAGGGCAGCGTTGCAATCATTCTTGTGTATATATTATTGGTATATACTTTTGACGGATGATTTCGGTAGGCGTATAAATGAATGTACTGACATATAATATATATATATGCGATCCTTCATTACCATATCAGTTCGAACAGTTGCTTCCCACCCACATAACCTCCTTCCCTGCATTGAAGGTATATCCAATTAATTCGCTTAATTTCCTTTACTGTGTGTTGCCAATTTTCAACGTTTTTATAATACTACCATCAGCACCACTGGGATTCTGCCTGATGGTTTGTACTGGATTGAACTCTAATAAATTTTGACTTGTGCATTTCAGGGTTCCAATGGATAGCAACTTTGGGGCCTCTCGACCGACATCGTTGACAGGATCAGGTGAGTTTTTCAAAAAATATAATAATAGGTCAATAGCTCAACCTTTGCCCTATGTTCTTATTTGTTCCATTCATATATTTTTTCCATTCTTGGTTCAGCCGGTGATCCTCCCCTTGGAGTTCTTTCAGACATTACTAATCTCAGTGCTGCTGAATTAAGAAGGAAACGTGCTAGAGAGAGGTACGCTTTGTTGAGTGTGGACGAGAAGGAGGCGAGGAATAAAAAGGCCCGTGAGAAGAGGCGCCAAAAGAAGGAGGAATGCCAAGGAGGAAATCAATCTGGTGCTGCTGTGAAAGGTAACTACAAGCCAACTCAACTCATCTTGGGCCATCTATTCTATTGATTAACCCACATAGCGAGTGACCAAAGATATCCACAAAAAAGCCATCTATTCTATTGATTTGCATCTCTTCACCGAATATGAATGAAGAACCCAACAGCTATTGCATCTTATTTTTGAAGGGGTGCATGCTTATTTCCTTTAGCTTTCACACACTTCCAATGCCAGACAATGCAATGCATAACCATAAATTTAATCAAGCAACCATTTAAGGCAGAAAAAAATACTTACTGCAAGTGTGTGGGATAAGTGTGTTAAATGCCTCATCAAATGATAACAATCACGCATGCTGGACAGAGCTAGCCCACATGGCATTCCACCTTAGAAAAAAAGAAAAACTATTAGCCTTCTTGCTCAACTCCATGTATCCTCGGTCTCTACTCTATGATGCTCTCCTCACCCATTGCTCCCTCACTGCCTTTCTTCTTGTTAGAAAGTATACCACAGAAAAAAAATAGAATTTATAAAAACTGACAAACAAATGATATTTTGCATGCTCCATGGTACCAGCCACCAAAAAACACAAAAAGGAAAACAATATGATGCAATTTTAGTGTTATGGATGTTCGCATCAGATTATTGTTTGCATTTCATGTTACTAAAAAATATATGGCCCCATGTTAAGAGGTAAACAACTGCCTTCAGTATATTTTGTGGCTTCGTGCACATTTGGTAGCATATATTAGCATGCATAGATATAACTATAGGATGACTGCAGAAACAAAGTGAGAATAGGGAAACAAGGCATGAAAGCAGAAGGTGATACAATTATAATCTCCATCTTCATGTACTCTAATACCCAGAGGATCCTCCGTCGCCTCATATATTTCTCTATTCTTTGCTGTAATATGTATCGGTACTAATGAAAAGATATTCTGCCAATTATGCCAAACAATCTTCTAATTTCGCGGCGTCGGAACAGCCCCACTTGGCGATATTACAAATATAAGCGCTGCTGATATAACGACGTGCCAAATGGAAGTGAATGATTCTCCCACACTGCATCAAGGTAAGAATAACATATTATTACATTCCGCATGCTATAAGAGGGCGGAATGCAATGCCATTATTGTTGTGTACAGTCTGATAACGTGATGGTTCTATGTTTTAATAGAAAGTGAAGCTTCCCATCTCAACATCACACCTAGACGTCTCCCATTTACAATCATCAACAATGTAGCTCACTATGGTCCCAATGAAGTACCTTTGAGCTGCGTAATTCAAACAACCCAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTACTGTATGTTACAACAGGAAGTGAAACTCATTATGATCCAATCCTAACAAGTGGAAACCAAAATACACATAGCCCAATGCATGAATGTGGTATATTTGAAGGCAATGATCAGAATGACGACATCTCTCTAGGTAATACTAATATTTCTTCATAATATGTTTGTTACTACCAAATTGTCAACAAAAAACCTCTTTGCGAACAGATTAGATGTGTATTAAGATTGTTATTGATTATGGCGAGCAAACAATTACATAGATCTTCTTATTATGTTGGCACATCAATAGATAATGAAGTGGTGTGTGCGCCATCCAGTATTACAAAAGACCATCTACAGTCAAAGCTACCTCAATGTAGCGACAAGCCTGCGACTCTTACAACGGAGCAGAAGCAAGCTAAGGTGAACCGGCAGAGATCACGACATCAATCACTAACAAAAGAACAAAGATTAGATATGAACGCCCGACGTAGGGTAGCAAGGCAAAATATGCCAGATGTGGAAATACATGATATGAATGCCCGCCTTAGGTCAAGACGACAAAGTGTTACTCCAGGGGAAAGGTCTGCTCTTTTGGCACGACGTAATGCACTCTATGCAGCTAGGCGTGACAAACCATGTGCTGAATCAATTGCATTGGAGTGCCCTGAGGGTAGCAGCCCGTCGTTGCTAGATCCAACGCCTTGCTTGGAAACAACCGGTGATGTGCCAGCTACATCGAACCTGCAAGCTGAGCATGCTGCAGATCATCTTGCACGATCGAGCACCTTCGAGGATGGTATCATATATATATGTTATCGTTCATACTTGCAATTTGTAACCTTCCGCATACTAACTTTTCATTCCACTATAGATGATATGGATTCCTTCATGGATGATGACACCGACGATGAATACTACTTGTTTGCTAGGCTAGGTACCATCGTCGTTATACCTGAAACTCTCTTTCACTTCAGTAGATATTTGAAACTAAACTACTTCCCACTAAACAATCCCAGGCGATGATGAGGATGACGATATGGTACAATCCGATGACGACGACACGCAAGCACCGACCTCTTCGATTCCTGATCCATTTGACTGTGTGTATAGCAACATCCCACAAAGCACAAATGTTCTGAAGCCTGAGCCTGACTGTAAACATTGTGGCGCCAAGAGGTTCCAGTACGAACCGTCGGGCTTCTGTTGTCGGGATGGCAAGATAAAGCTTGTAGAAAACGAGACACCCCCTGAACTGATGAGGCTCTAGACAAGCTCGGATCCAGATGCCAAGCATTTCCGGGATAACATTAGATATTTCAACGGTCACTTCTCGTTCACTACCCTTGGTGTAAGCCTTGACAAGGCCTTTGCAAACATGAGCTCGGGTGTGTACACATTTCGGGCCCATGTTCAGATCTATCATAACATACATTCTTTCGGTCCTAGAGAGTCTAGTCCAGAGCATCTCGAGTTGTATTTCTACGATGACGATCCAACCTTGAGTCACAGATTCCGTCGTTCTCCGAGCCTTGACCAGGATGTGATCAGGACTGTTTCAGACGTCCTTTGGAACAACCCGTACTCGGAGACATTTAGAAGTCTGGGGCAGGCTGATGACCTCGCGAACTACCGCGTGACACTAAATCTAGATCATAGGTTGGACCAAAGGCGTTACAATGTGCCGGTGACAACTGAGGTCGCTGCTGTCTGGGTTGAAGGAAACGAGAGAAGGAAGTTTGAGCCTAGCGTGACAATATACGGTAACGACCGTACCCGTAAATGCATCCAACCTTTCTACGGATGTTACGATCCACTCTCGTATCCTTTGTTCTTCCCTAGAGGAGAGAGTGGTTGGCATCAAGGTCTTCCAAAGGACAAAATAACCATGGAGGCTGCAAACACGCGTCATGGCGATGATCCTAGTAAGTTTATCTTCGTACTGTGTTGACTAAAACAATTGATAATTGTCCGTTACATGACTGCACTAACCCAGACGTTTCTCACGTGCAGATTGTAACAGCGGGATACGAGTTTCTGTAAGGGACTACTACTGCTACAAATTCCAGATGCGTCGTGGGATTTTCAATCCTATACTTCACGGGGGACGCCTGTTCCAGCAGTTCGCTGTTGACATGTACATCAAGGTTGAGAGCTCCCGTCTGGACTATGTGAGGAACAACCAGAAGGAGATAAGGGCCGACCTATATCAAGGGTTAATGGACAGCATCCAGGCTGGGGAGAGTCGAGCAAGCGCGGTCGGCAAACGGACTGTGTTGCCAGCGTCGTTCGTAGGTGGTGGCCGAAATATGAAGCGCCGCTACATGGATGCCATGGCCTTAGTACAGAAGTATGGGAAGCCAGATGTATTCCTTACAATGACAAGCAACCCAAAGTGGGATGAAATTACTCGTGAGCTTGAGCCTGGCCAGACACCACAAGATCGTCCTGATCTTGTGGTCTGTGTCTTTCGAGCCAAGTTAGAGGACCTAAAGAAGCAGTTGTTCGAGAAACACATTCTTGGCAAGGTTATTGCACATGTTTATGTTGAGTTCCAGAAGAGGGGTCTGCCGCATGCACACTTCTTGTTGATCATGAGTAGTCGATACAAGCTAACATCTGCGGACCAATATGACTGCATCATCTCGGCTGAGCTTCCCGATAAGAAAAAGTATAGAGAGCTGTACGATATGGTTGTTAAGCATATGATGCATGGCCCTTGTGGTCCACTCAATGGTAAATGCCAATGCATGCGAGATGGAAAGTGTAGGAACAACTACCCACGAGAGTTCAACCCTACAACCTCGCAAGGCAAGGATTCATACCCGTTGTATAGGAGACGTAATGACGGCAAGAGTAGGATGGTTAGAGGCCACCCTCTCGATAATAGGTGGGTTGTCCCGTACAATCCATATCTTCTAAGGATGTACAACTGTTACATGAATGTCGAGGTTTGTTCAAGTATCAAGGCAATAAAGTACCTCTTTAAATACCTATACAAGGGACACGAGAGGGCCTCGATATCCATAAACGAGGCAGATAACAACGGCGAAATCGATGAGATTCAGCGCTACAGGGATGCGAGGTGGGTGACCCCTCCAGAAGCCTTGTGGCGTATATATGGGTTTGACATATGCCACATCTCGCCGTCTGTGAGGCAGTTGCAACTTCATCTGCCAAACATGCACATGTTGGCTTCCGATGCAGACAAGGATCTCCGTGATGTTCTTGATAAGGAAGACGCAGGCAGGTCGATGCTTACAGCGTATTTCGAGGCAAACAGGCAGCATGTCTGGGCTCGAGATATCCTTTATAGGGATTTCCCAATGTGGTTTACTTGGCAGACGCCAGGTAAATACTGGAAAAAAAGAGAGAAAGGAGGCCAGGTCGGGAGAATTGTGTGTGCCCACCCGGCAGAGGGGGAGCGTTACTATTTTCGGGTGCTGCTAAACCATGTGGCAGGCTCCACCTCATTCGAAGACCTACGTATTGTTGATGGCGTGGTCATGCCTTCGTTCCGTGCTGCAGCTGAAAGAAGGGGTCTTATAGAGGCAGACAACACCCTCGACGAGTGCCTTACGGAGGCCGGGGTCTTCCAGATGCCACTGTCGCTACGCAGGTTATTCGCTACCATATTGGTGTATTGCGAACCTAGCGATGTCCGTGGTCTTTGGGACAAACATCTAGATGCCATGTCTGATGACTACAAGCGTAACAACACATGCCCTCATGTTGTCCAACAGATGGTGCTGATAGATATCCGAGGCATGCTACAATCAATGGGAAAGGAAATCACATCGTTTCCGCTCCCTGAAATTGACGAATCACATGATAGTACCAGAGGAGATCCCAGAGAGATTATTGAGGAGTCATCCATTGGTGTGGAGACGGACGATATGAACCTCTCAGACCAGCTCAATGATGAGCAAAGGTCTGCATTCAACAAAATCATGAATGCAGTTGGCAGTGCTCAGGGGGGTGTTTTCTTCGTAGATGGCCCAGGAGGCACGAGGAAGACTTTCCTGTATAGGGCGCTGCTAGCTACGGTTCGCGGCAAAGGAGATATAGCGGTGGCAACCGCGACGTCGGGTGTTGCAGCTTCTATAATGCCTGGAGGCCGGACCGCACATTCGCGGTTCAAGATCCCCCTCAACATTGAGGAAGGGTCTTATTGCAGCTTCACCAAACAAAGTGGGACGGCGAAGCTTCTCCAGATGGCGTCGCTTATAATATGGGATGAGACCTCCATGACAAAGAGGCAAGCGGTTGAGGCCCTCAATATGAGCATGAGAGATATAATGGGTTGCCCGCATTCTCCGTTTGGAGGGAAGACGATTGTGTTTGGAGGGGATTTCAGGCAGGTGCTCCCGGTCATTAGGAAGGGCACTAGGTCTCAGATAACAGATGCCACTCTACGCAGGTCCTATCTTTGGGATTGTATGGTTCAATTGAAGCTTGTTCGCAATATGAGGGCGTAGAGCGACACGTGGTTTGCGGACTACCTCCTTCGAGTTGGGAATGGAACCAAGGAGGTGAACAAGGAAGGACTCATAGGCCTTCCTTCGGATATTTGCGTGTCGTGCAAAGGGAATGAAACAGACCTCAAAAGGCTCATCGATACCGTGTTCCCCAACCTAAACGATAACCTGACGGACCCAAACTACATCACATGTAGGGCCATATTGTCCACTCGGAATGAGTTCGTCGATCGAATAAACATGAAGATGATTGAGCGGTTTAGAGGGGATGTGATGACATATCATAGTTTTGATTGAGTAGAGGATGACCCTCATAACTATTACCCGCCAGAATTCTTGAACTCTCTAACTCCAAATGGGCTACCTCCGCATGTGCTTAAGCTGAAGATAAACTGCCCCATCATGCTTTTGAGGAACATTGACCCAGCCAACGGGCTTTGCAATGGGACAAGGCTGGTGGTTCGTCAGTTCGGAAAAAATGCTATTGACGCGGAGATTGTTGTAGGGCAGCATGCTGGAAAGAGAGTTTTCCTTCCTCGGATACCTCTATGTCCTTCTGATGATGAGATGTTTCCGTTTCGCTTCAAGAGGAAGCAATTTCCGGTTAGATTGAGCTTTGCATTGACCATCAATAAGGCGCAGGGTCAAACCATTCCAAATGCAGGCGTCTACTTACCACAGCCTGTCTTCTCTCATGGTCAACTATACGTCGCGCTGTCTAGAGCAACCTCTAGAACAAACATAAAAATACTATCGATGCCGGTAGAAGACAAGAAACAAAATAAAAAGTCTAAGCGTACTGGCGTGAAGGACAATGAGAAGAAAGGAAAGGAATTGTCTAAACAGGCTGCAACATACACAAAAAAATATTGTGTTTAGAGAGGTCCTCACGGATTAGAAAAGGTATATTATGTGACTAATTAACCGTCCACAATATGCTTGCTTAAATTCCATTCTTACTGCTGAGTGTTTCTTCACAGTTTAGTTCACGTATGGCTTTGTATGTATTAGGTGTTTTCTGAAGACGGTGAAATAAATCACCTATAAGATCTGATCTTTGGAGGATAATATCTTATGTTGAATATTATTATACTG
More
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| CDS seq | ATGGATAGCAACTTTGGGGCCTCTCGACCGACATCGTTGACAGGATCAGCCGGTGATCCTCCCCTTGGAAGCGACACGTGGTTTGCGGACTACCTCCTTCGAGTTGGGAATGGAACCAAGGAGGTGAACAAGGAAGGACTCATAGGCCTTCCTTCGGATATTTGCGTGTCGTGCAAAGGGAATGAAACAGACCTCAAAAGGCTCATCGATACCGTGTTCCCCAACCTAAACGATAACCTGACGGACCCAAACTACATCACATGTAGGGCCATATTGTCCACTCGGAATGAGTTCGTCGATCGAATAAACATGAAGATGATTGAGCGGTTTAGAGGGGATGTGATGACATATCATAGTTTTGATTGA |
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| Protein seq | MDSNFGASRPTSLTGSAGDPPLGSDTWFADYLLRVGNGTKEVNKEGLIGLPSDICVSCKGNETDLKRLIDTVFPNLNDNLTDPNYITCRAILSTRNEFVDRINMKMIERFRGDVMTYHSFD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0112000 | OsNip_08t0112000-00 | Chr08 | 636209 | 643929 | + | RAP2018-11-26 | ||
| CDS seq | ATGGATAGCAACTTTGGGGCCTCTCGACCGACATCGTTGACAGGATCAGCCGGTGATCCTCCCCTTGGAAGCGACACGTGGTTTGCGGACTACCTCCTTCGAGTTGGGAATGGAACCAAGGAGGTGAACAAGGAAGGACTCATAGGCCTTCCTTCGGATATTTGCGTGTCGTGCAAAGGGAATGAAACAGACCTCAAAAGGCTCATCGATACCGTGTTCCCCAACCTAAACGATAACCTGACGGACCCAAACTACATCACATGTAGGGCCATATTGTCCACTCGGAATGAGTTCGTCGATCGAATAAACATGAAGATGATTGAGCGGTTTAGAGGGGATGTGATGACATATCATAGTTTTGATTGA
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| Protein seq | MDSNFGASRPTSLTGSAGDPPLGSDTWFADYLLRVGNGTKEVNKEGLIGLPSDICVSCKGNETDLKRLIDTVFPNLNDNLTDPNYITCRAILSTRNEFVDRINMKMIERFRGDVMTYHSFD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.139386 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0646700 | RBH | 2.131787 | 1.586235 | 5.235670 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g02000 | RBH | 0.075184 | 0.000000 | 0.092129 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0112000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0000860 | RBH | 0.0 | 0.0 | 1.851159 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0000870 | RBH | 0.0 | 0.0 | 0.875113 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0000880 | RBH | 0.000000 | 0.0 | 2.534085 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0010300 | RBH | 0 | 0.0233305 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0010700 | RBH | 0 | 0.0133015 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G000880 | RBH | 0.267909 | 0.000000 | 1.542514 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
