Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0646700 | OGI:01072140 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:26060892-26064410 | ||||||||
| Gene Symbol | PSH1, Rb, Rb*, bhlh165, OsbHLH165, Rb2, OsPSH1, OsRb2 | ||||||||||
| DNA seq | ACCTAAGATGACTTCATGGTTATTACCAAATGCATGTACAACATGCAAAAAACTTTACAAGTGGTTTGACAAACTGAAATTTGCAATTAAATAAAATAGCCAGTTGAGCAAAACATATTAATCCCTGACCTAATCTGAATCCGAAGCTCCTTTCACATGGAGCAAATTACTGATCAAATGTGCTCCGTTACAAATCAGTACTCACAGTTCCTGGCTCCTGCTTACGTCCTCACACAAAACTTAACACTCACTGAAGACCTGCATATTATATGAATATTCATGTTTCTTGATTCTAAAAATAAAGACATCACTGATTTGACTCTCTTGCTAGAAACATCAAATAGTTTGGCAGAAGTGAGCTTAGCATGAGCAGGGAAAACTCATACCAAAATAATGATAGAAACAAAAATTGTATAATTTTTTTCTTTGATAAAGATCAAAGTTTTATTTGATATAGTAATAGGCTAATAGCATGAGCTCAAATGTTGGCTTTCAGTTCAGATGATCTCCACTCAAGTGTTATTCAGTACCCCACTGGAAACTGGACTGCCACAACATGATTACAAGAAATGCTAAACTGCAATTGGAAATCTGAACTAAAGCAGAACCTCATAAATCTGCTAACATCAGTACTAAGCTGCAAGACATGTACAAACCAACTACGATTGTTTTAAAAAAGAAGAAGAAATAACTGTCAGCTTACAAGTAAGGACTTCATCTTGAATTTGTTCATAACAGTGAATTGCTTCATCCTGGACCTGGCTGCTTCTCTCCTATTAGCAAAGAATAAGAAATAATGAGCAAGGGAAGAGCTGCCAGGGTGGTTCACCAAGGACTGATAGAAAAATATCTTTACCTGATCACCTGCAACTCCTCGGCGAGCAGCCGACTACAACGGTTTTGGTCTCTGAGTCAGCCATAACGAGGAGGCGGCCGGAGGGACTGCTCGGGGAAGGAGTGGATGTAGGCATATACAGGAGAAGGGGCAGACCAAGAAAGTAAATGTTTACTGCTGTCCAAGGAAAAAAACTCAAGAAATGTTAGACATGGAATATAAAAATTACAGTAAGAATGGAATTTAAGCAAGCATATTGTGGACGGTTAATTAGTCACATAATATACCTTTTCTAATCTGTGAGGACCTCTCTATACACAATATTTTTTGTGTATGTTGCAGCTTGTTTAGACAATTCCTTTCCTTTCTTCTCATTGTCCTTCACGCCAGTACGCTTAGACTTTTTCTTTTGTTTCTTGTCTTCTACCGGCATCGATAGTATTTTTATGTTTGTTCTAGAGGTTGCTCTTGACAGTGCAACGTATAGTTGACCATGGGAGAAGACAGGCTCTGGTAAGTAGACGCCTGCATTTGGAATTGTTTGACCCTGCGCCTTATTGATGGTCAATGCAAAGCTCAATCTAACCGGAAATTGCTTCCTCTTGAAGCGAAATGGGAACATCTCATCATCAGAAGGACATAGAGGTATCCGAGGAAGGAAAACTCTCTTTCCAGCATGCTGCCCTACAACAATCTCCGCGTCAATAGCATTTTTTCCGAACTGACGAACCACCAGCCTTGTCCCATTGCAAAGTCCGTTGGCTGTTGGCTGGGTCAATGTTCCTCAAAAGCATGATGGGGCAGTTTATCTTCAGCTTAAGCAGATGCGGAGGTAGCCCATTTGGAGTTAGAGAGTTCAAGAATTTTGGCGGGTAATAGTTATGAGGGTCATCCTCTGCTCAGTCAAAACTATGATATGTCATCACATCTCCTCTAAACCGCTCAATCATCTTCATGTTTATTCGATCGACGAACTCATTCCGAGTGGACAATATGGCCCTACATATGATGTAGTTTGGGTCCGTCAGGTTATCGTTTAGGTTAGGGAACACGGTATCGATGAGCCTTTCGAGGTCCGTTTCATTCCCTTTGCACTCTAAGCAAATATCCGAAGGAAGGCCTATGTTTCCTTCCTTGTTCACCTCCTCGGTTCCATTCCCAACTCGAAGGAGGTAGTCCGCAAACCACGCGTCGCTCTGCGCCCTCATATTGCGAACAAGCTTTAATTGAACCATACAATCCCAAAGATAGGACCTGCGTAGAGTGGCTTCTGTTATCTGAGACCTAGTGCCCTTCCTAATGACCGGGAGCACCTGCCTGAAATCCCCTCCAAACACAATCGTCTTCCCTCCAAACGGAGAACGTGGACAACCCATTATATCTCTCATGCTCATATCGAGGGCCTCAACCGCTTGCCTCTTTGTCATGGAGGCCTCATCCCATATTATAAGCGATGCCATCTGGAGAAGCTTTGCCGTCCCACTTTGTTTGGTGAAGCTGCAATACGACCCTTCCTCAATGTTGAGTGGGATCTTGAACCGCGAATGTGCGGTCCGGCCTGCTGGCATTATAGAAGCTGCAACACCCGACGTCGCGGTTGCCACCTCTATATCACCATTGCCACGCACTGTAGCTAGTAGCGCCCTATATAGGAAAGTCTTCCCCGTGCCTCCTGGGCCATCTACGAAGAACACGCTCCCCTGAGCACTACCAACCGCGTTCATGATTTTATTGAATGCAGACCTTTGCTCATCATTGAGCTGGTCTGGGAGGTTCATATCATCTCTCTCCACAACAATGGAAGACTCCTCAATAATCTCTCTGGGATCTCCTCGAGTACTATCATGTGATTCATCTATTTCAGGGAGCGGGAACGATGAGATTTCCTTACCCATTGATTGTAGCATGCCCCGGATATCTATCAGCACCATCTGTTGGACAGCATAAGGGCATGCGTTGTTACATCTGACATGGAATCTAGATGCTTGTCCCAAAGTGCACGGACATCGGTAGGTTCGCAGTACACCAATATGGTAGCGAATAACCTGCGTAGCGACGCCGGCATTTGGTAGACACCGGCCTCCGTAAGGCACTCGTCGAGGGTGTTGTCTGCCTCTATAAGACCCCTTCTTTCAGCTGCAGCACGGAACGACGGCATGAGCACACCATCAACAGTACGTAGGTCTTCAAATGAGGTGGATCCTGTCACATGGTTTAGAAGCACCCGAAGATAGTAGCGCTCCCCCTCTGCCGGGTGGGCACACACAATTCTCCCGACCTGGCCACCTCTATCTCTTTTCTTCCAGTACTTACCTGGCGTCTGCCAAGTAAACCACATTGGGAAATCTCTATAAAGGATATCTCGAGCCTAGACATGCTGCCTGTTAGCCTCGAAATACGCCGTAAGCATCGATCTGCCTGCGTCTTCCTTATCCAGAACATCACGGAGATCCTTGTCTGCATCGAAAGCCAACATGTGCATGTTTGGCAGATGCAATTGCAACTGCCTCACAGACGGCGAGATGTGGCATATGTCAAAACCATATATACGCCACAAGGCTTCTGGAGGGGTCACCCACCTCGCATCCCTGTAGCGCTGAATCTCATCGATTTCACCGTTTTTATCTGCCTCGTTTATGGATATCGAGGCCTTGTCATGTCCCTTGTAAAGGTATTTAAAGAGG
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| CDS seq | GCAAAGCTTCTCCAGATGGCATCGCTTATAATATGGGATGAGGCCTCCATGACAAAGAGGCAAGCGGTTGAGGCCCTCGATATGAGCATGAGAGATATAATGGGTTGTCCACGTTCTCCGTTTGGAGGGAAGACGATTGTGTTTGGAGGGGATTTCAGGCAGGTGCTCCCGGTCATTAGGAAGGGCACTAGGTCTCAGATAACAGAAGCCACTCTACGCAGGTCCTATCTTTGGGATTGTATGGTTCAATTAAAGCTTGTTCGCAATATGAGGGCGCAGAGCGACGCGTGGTTTGCGGACTACCTCCTTCGAGTTGGGAATGGAACCGAGGAGGTGAACAAGGAAGGAAACATAGGCCTTCCTTCGGATATTTGCTTAGAGTGCAAAGGGAATGAAACGGACCTCGAAAGGCTCATCGATACCGTGTTCCCTAACCTAAACGATAACCTGACGGACCCAAACTACATCATATGTAGGGCCATATTGTCCACTCGGAATGAGTTCGTCGATCGAATAAACATGAAGATGATTGAGCGGTTTAGAGGAGATGTGATGACATATCATAGTTTTGACTGA
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| Protein seq | AKLLQMASLIIWDEASMTKRQAVEALDMSMRDIMGCPRSPFGGKTIVFGGDFRQVLPVIRKGTRSQITEATLRRSYLWDCMVQLKLVRNMRAQSDAWFADYLLRVGNGTEEVNKEGNIGLPSDICLECKGNETDLERLIDTVFPNLNDNLTDPNYIICRAILSTRNEFVDRINMKMIERFRGDVMTYHSFD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0646700 | OsNip_01t0646700-01 | Chr01 | 26060892 | 26064410 | - | RAP2018-11-26 | ||
| CDS seq | CTCTTTAAATACCTTTACAAGGGACATGACAAGGCCTCGATATCCATAAACGAGGCAGATAAAAACGGTGAAATCGATGAGATTCAGCGCTACAGGGATGCGAGGTGGGTGACCCCTCCAGAAGCCTTGTGGCGTATATATGGTTTTGACATATGCCACATCTCGCCGTCTGTGAGGCAGTTGCAATTGCATCTGCCAAACATGCACATGTTGGCTTTCGATGCAGACAAGGATCTCCGTGATGTTCTGGATAAGGAAGACGCAGGCAGATCGATGCTTACGGCGTATTTCGAGGCTAACAGGCAGCATGTCTAG
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| Protein seq | LFKYLYKGHDKASISINEADKNGEIDEIQRYRDARWVTPPEALWRIYGFDICHISPSVRQLQLHLPNMHMLAFDADKDLRDVLDKEDAGRSMLTAYFEANRQHV |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0646700 | OsNip_01t0646700-03 | Chr01 | 26061366 | 26062097 | - | RAP2018-11-26 | ||
| CDS seq | TCGGCTGCTCGCCGAGGAGTTGCAGGTGATCAGGAGAGAAGCAGCCAGGTCCAGGATGAAGCAATTCACTGTTATGAACAAATTCAAGATGAAGTCCTTACTTGTAAGCTGACAGTTATTTCTTCTTCTTTTTTAAAACAATCGTAG |
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| Protein seq | SAARRGVAGDQERSSQVQDEAIHCYEQIQDEVLTCKLTVISSSFLKQS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0646700 | OsNip_01t0646700-02 | Chr01 | 26061385 | 26063202 | - | RAP2018-11-26 | ||
| CDS seq | GCAAAGCTTCTCCAGATGGCATCGCTTATAATATGGGATGAGGCCTCCATGACAAAGAGGCAAGCGGTTGAGGCCCTCGATATGAGCATGAGAGATATAATGGGTTGTCCACGTTCTCCGTTTGGAGGGAAGACGATTGTGTTTGGAGGGGATTTCAGGCAGGTGCTCCCGGTCATTAGGAAGGGCACTAGGTCTCAGATAACAGAAGCCACTCTACGCAGGTCCTATCTTTGGGATTGTATGGTTCAATTAAAGCTTGTTCGCAATATGAGGGCGCAGAGCGACGCGTGGTTTGCGGACTACCTCCTTCGAGTTGGGAATGGAACCGAGGAGGTGAACAAGGAAGGAAACATAGGCCTTCCTTCGGATATTTGCTTAGAGTGCAAAGGGAATGAAACGGACCTCGAAAGGCTCATCGATACCGTGTTCCCTAACCTAAACGATAACCTGACGGACCCAAACTACATCATATGTAGGGCCATATTGTCCACTCGGAATGAGTTCGTCGATCGAATAAACATGAAGATGATTGAGCGGTTTAGAGGAGATGTGATGACATATCATAGTTTTGACTGA
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| Protein seq | AKLLQMASLIIWDEASMTKRQAVEALDMSMRDIMGCPRSPFGGKTIVFGGDFRQVLPVIRKGTRSQITEATLRRSYLWDCMVQLKLVRNMRAQSDAWFADYLLRVGNGTEEVNKEGNIGLPSDICLECKGNETDLERLIDTVFPNLNDNLTDPNYIICRAILSTRNEFVDRINMKMIERFRGDVMTYHSFD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 26061900 | 26062014 | - | OsNip_01t0646700-01,OsNip_01t0646700-03 | OsNip_01t0646700-03,OsNip_01t0646700-02,OsNip_01t0646700-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.131787 | 1.586235 | 5.235670 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0112000 | RBH | 0.139386 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g45880 | RBH | 1.468142 | 1.518606 | 1.011184 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0646700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0387800 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0426900 | RBH | 2.316847 | 17.6722525 | 9.8329605 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
