Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0673500 | OGI:07077570 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:28469782-28474162 | ||||||||
| Gene Symbol | SRP33B, Os-SR33, OsSR33, SR33, OsSRp33b, Os-SRp33b | ||||||||||
| DNA seq | GGCATGATCCAGTGGATATAAATGTATTTATTACCTGCAACTTGAGCTAGGAAGTGCATTAAGCAAACAAACGACGGAATGACTCTGTTCAACTTTCTTACCAGTACCACAATAATATACCTAAGTCAAGTACAGTGTCAAAATGAACAAAAGACAAATCCCAAGTTCAAATCTATAAATAGGCGTACAGTATCATCCAGTAATCTGAAAGAGCACTGAACGTATGAAATAGTACTTTGGAAGCGATTCAGAAGTAGTCGAGGGCGACAGATGTCAAAACGTTTCAGGACCATGATTCCTCGACACTCCGTCCCCAGAAGCACATCAGCATCATTCGGACTTGGCCTGAAAATGCGAACGGGATTAGTTTAGATTTCCATAAAAGCAAGCATGTAATGGTATAAAGAGCTATATACATCAGGAGATCGGGAACGTGATGGGCTCCTGCTTGGGCTACGTTTCTTGGGGGGGCTCCTGCTTGGGCTGCGTTTCTTGGGGCTTGCTGCATCACCATTGGCAGGCTAACCAGAAATAGGTCAGGTCAGTCACAAAAACAAATCACACAAAGTACGTTAGCAAAAACTTACAGAAGTATTTGGAGACTGAGATCTTGCTGGTGATCTGCAAAAAGTTCCAGAAATAACACGATTCAATATCCAGATTCCAGAATGCAGCTTTAACAGTTTGCTTCCAAAAAGCCTTCACGCCTCCCAATCATTGGAATGGCCAGATGCAAGCAAAAAGAGCTCATAGAAATTAGAAGAGAACAAATTCCTTAAGTTCAAAACATTCAGAGTGTTTAGTGTCAAATGTTACGTGACATATTCGCTAGAACATTCCTCCAAAGTGATCCCAACGAGAGAGCAAGCGAGAAACTCATTCCTCATTTACTCAATCCAAGCAAACACAGTCATTGCGCCACCATAATCCATAGCATCAATCCTTAATGCTCTAGCTCCAGTGTCCCAAAGCAATTCTTAGGCCCAGGCTCTGATTCTGATGTAATAAGTCACAGTACATCAGGTCAACAAATATGGATGATTTTTAGCTACCAGAGCAGCACCCAGTTTATTACCATACCTCAGACAACCAATAGAACTGTTGCATATAGAAGAAATCCCAACCTCGATTTCCCATTATGCAATCCCTAGATCTCCGCACAAATCCTCATCTAATGAACAAATCATTGAGGCTTTCAAATATTGGATACTATCCAGTTGAGTTAGGTACGAAATATGTCACACCAGATAAACTTTGTAACAAATATACCAACAGTTTCCCACATAAAGTTACACTAGGACAATCAGTAAGGTTGATTAAATTTGATTCATAAAGCCAAAGAGGTGTAACAGTTGGTTGAGAATATGGGATAGCAAATGAGAATTGGGATGACCCATCTTTAACACAGAAAGATTGCAGAACTAATAAATTGTTCAGACAGTTCAAGGCCAACTAATCAAAAAATATTTGATGGCAAAAATACCACCATAAAATCTATATACATGTTATCTTTCGGGTAGCAGGCAATATTTTCTATATATAATTCACAACATGAAGACCAAGGATTCAATGTCCAAGAGTGATTCATCAATGTTACCTTGATGGAGAGCGCCCCTTTGACTCTGATCTTGAACGGGAAGAAGCTGATCTCGATCGAGATCTAGATGCTGAACGGCGTGATGACTTTCCCTTGGGAGACTTGCTGCGGGGCATATTAAACTCTGGTCAGTGGCCAATGGTATTATTGAGGTACATTAGAATGTAATCACCACCAGACCTTGGACTCCTGCTTCTGCTGTAGCTGCGACCTCGACTTCGGCTTCGGCTTCGTGAGTATGAACGGCTGCGCTTTCCATCATACTCCTTCACCTAAATATTAGTGAGTTGTATTATTGGTTACTTTTGGGACAAGTTGATCCAAAAAAGTAAAGTAGAAATAAACATGTGTGTACCCTTATATAGGCCTTTGAGAAGGCATTCTTAAATTCAGAATCATCAAGTTTCCTGATCTGCAAGAGATAAGCAGTAAAAAAAATAAACACAAAGGAAGGAATATGATGCAGACTACAGTACTGAAACTGAAAGACAGTGCTCCAAAATCACATATCTAACAAGATTATACAAGTGTAGTGAAATATGAAATGTAGCTACAAGGCACCATAAGACACCAAAAATAGAGAAGAAAGAGAATACTTACAGCATACTTCATGTCATCATAGTTTGTGTAGTCTACAATTCCTATAGTACCTGTAGCAAACAAAAGTGTGTATCAACTATGGTCACAGCAATAATAGCATTCACTATTTTTTTTTGCTTAATCAAATTGCTGAAAACTGATAATAATGGTGTCCAGCTGAATAGATTATAGTATCTACTACCTATAAACTAAATGCCTAAAATATAGTATTATCTTTGGTTGACTCTGCATTTTCTTGCTGGGGTATAACATGGAATGAATGTTGCAAAATTAGACGCACAAACTAGAGGACCAAATGTCATTTTTTAAGACAATGGAAATGGTAGGACCAATTGTCAATACTTAGGCATTCATCAACTTATGAGTAACTCATCACACGACATCAATTCGTTTCAAGAATTGCAATCTGACGTAATAAAAAAGTTCATTTATATCTTAAAAATCAACTGGTTTGACAGGGTGGTATATCCAATTGGTCATCCAATCCATAGAGAACTTATGAAGAGCTATGGCAAACACCATTGTTACAGTAAGCAAAGAACTACTGTAGGGACCAAACAGACTTACCACCACCCTCACGGTACACTTCAGAGTAACAAACATCACCAGCATTTCGCATATGGTCCTGACACAACATTCATAGGCAAGGTTTAGCTTCAAAGAGAATGAGGGAAATCATGAAAGACAAAAGCAAAGCAGCAGAAAAGTGGATAGAACAAATTGTCTTTAGCAGACCTTTAGGTCTTGCCATGATGCTGAAGAAGGTAGTCCAGTAACCAGAACTGTCAAGATGTACACAAATGATTTCAGATTAGTATATATAAACAGAAAACCGAGCATTTATAAATGGATCTGAAATCAGCATTCAGTATCATACCGCGATACTCTGTATGCCTAGATACACCCCCACGACGTCCCCCTCCACCAGAATTGTTAAAGGAGGAAGAGTTACCTCTCCCACCATGTGCAAGTTCCACCTGTGCATATTGGAGCATCAGATATGTGAACACAGAAGAGCAAATTACCAACATCTCATAGCACCTACCCTCAAACGGTTCCCATCAAAATTATAGCCATCCCGTCCACGGATTGCATCTTCAGCATCACGGGGATCTTCGAACTTCATGGCAAGGCAACAAATATAGACAGTCAGGATATTCAATAAAATCCAAAAGTAGACAAGTAGCTGCTAGAAGCATACAGTTATCAATTAACATAAGGAGGTCATATTACTTGTTATAACCATCAAGAAATCCAATAGTTCCAATAAATACATTCAAACTTAAAAGAACCTAACAGTGCTGCGCAACTTACCTCAACAAAAGCAAAACCAGGCGGCCTTGGGGGGATCTTCAAGTCAATATCAACAATGCGTCCATACTGCAGGAAAAAAAACTGCAGTGTTAGACCCTTACACAAATTAGTGCAAAATCCAAAACTAATGAGGCGAGTGGAAGACAGAAGTCCAATTATTTAATGTGAATGTTACAACCGCAAATGCCAACACGGCAACACCTAGATGTTAGAAGAGTGTCAATAAGGTACTAACTAGTTAACAATTCAAGGCACAAAATCGTTTCCTTCCTGGGGAGCTTAATCGAAGAGATTAACAAAACTACCAACCTTGTAGAACAGATCCTCTACCTCCCTCTCCCTGATGTCGCCCGGGAGGTTCCCGACATAAATTGTCCTGCTCCAGCGCCTACTCATCCTTCCTTCTGCAATCCACATCATCAAATAGAGCAATTATACTATTAGAACTCACACTTTTACAGAACTGATGCATTCAACCAAAACAGGTAACACCAAATTGAAACTTCACACTAAAATTCCCCGCACAAAAAGTTCACTGTTTCAGGTTTTAAGTGCGGAAAAGGAAGGCGGTTAGGCGGGCATGGGGGGTTGAACTGAACCCCAAACTGGACCACAAATTTTAGGGCAAAGAGATAAGGTTCCAGATCTAGAAGAGAAGCTAAAGGTCGAGGCGAAGAGAGAAGGTGCGGGATGAGAGAGAGAGGGTGTTCGTACTGGTTGCTCACCGGCGAGGACGCGGCGGAAGTAGCAGGACGCCGGCGCCGCTGCTCGCGTGGCGGAGATCGGCGGCTGCTCGGCGCAGGCGGCGGGCGAACTCGCGAGGCGAGGCGACGAGACGAGACGAGGGGTTTGGTCGTGTCTGACGTCGTA
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| CDS seq | ATGAGTAGGCGCTGGAGCAGGACAATTTATGTCGGGAACCTCCCGGGCGACATCAGGGAGAGGGAGGTAGAGGATCTGTTCTACAAGTATGGACGCATTGTTGATATTGACTTGAAGATCCCCCCAAGGCCGCCTGGTTTTGCTTTTGTTGAGTTCGAAGATCCCCGTGATGCTGAAGATGCAATCCGTGGACGGGATGGCTATAATTTTGATGGGAACCGTTTGAGGGTGGAACTTGCACATGGTGGGAGAGGTAACTCTTCCTCCTTTAACAATTCTGGTGGAGGGGGACGTCGTGGGGGTGTATCTAGGCATACAGAGTATCGCGTTCTGGTTACTGGACTACCTTCTTCAGCATCATGGCAAGACCTAAAGGACCATATGCGAAATGCTGGTGATGTTTGTTACTCTGAAGTGTACCGTGAGGGTGGTGGTACTATAGGAATTGTAGACTACACAAACTATGATGACATGAAGTATGCTATCAGGAAACTTGATGATTCTGAATTTAAGAATGCCTTCTCAAAGGCCTATATAAGGGTGAAGGAGTATGATGGAAAGCGCAGCCGTTCATACTCACGAAGCCGAAGCCGAAGTCGAGGTCGCAGCTACAGCAGAAGCAGGAGTCCAAGCAAGTCTCCCAAGGGAAAGTCATCACGCCGTTCAGCATCTAGATCTCGATCGAGATCAGCTTCTTCCCGTTCAAGATCAGAGTCAAAGGGGCGCTCTCCATCAAGATCACCAGCAAGATCTCAGTCTCCAAATACTTCTCCTGCCAATGGTGATGCAGCAAGCCCCAAGAAACGCAGCCCAAGCAGGAGCCCCCCCAAGAAACGTAGCCCAAGCAGGAGCCCATCACGTTCCCGATCTCCTGATGCCAAGTCCGAATGA
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| Protein seq | MSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVEFEDPRDAEDAIRGRDGYNFDGNRLRVELAHGGRGNSSSFNNSGGGGRRGGVSRHTEYRVLVTGLPSSASWQDLKDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIRKLDDSEFKNAFSKAYIRVKEYDGKRSRSYSRSRSRSRGRSYSRSRSPSKSPKGKSSRRSASRSRSRSASSRSRSESKGRSPSRSPARSQSPNTSPANGDAASPKKRSPSRSPPKKRSPSRSPSRSRSPDAKSE |
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| Function | Serine/arginine-rich-splicing factor SR34 [UniProtKB/Swiss-Prot:O22315] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0673500 | OsNip_07t0673500-02 | Chr07 | 28469782 | 28473899 | - | RAP2018-11-26 | ||
| CDS seq | ATGATGTGGATTGCAGAAGGAAGGATGAGTAGGCGCTGGAGCAGGACAATTTATGTCGGGAACCTCCCGGGCGACATCAGGGAGAGGGAGGTAGAGGATCTGTTCTACAAGTATGGACGCATTGTTGATATTGACTTGAAGATCCCCCCAAGGCCGCCTGGTTTTGCTTTTGTTGAGTTCGAAGATCCCCGTGATGCTGAAGATGCAATCCGTGGACGGGATGGCTATAATTTTGATGGGAACCGTTTGAGGGTGGAACTTGCACATGGTGGGAGAGGTAACTCTTCCTCCTTTAACAATTCTGGTGGAGGGGGACGTCGTGGGGGTGTATCTAGGCATACAGAGTATCGCGTTCTGGTTACTGGACTACCTTCTTCAGCATCATGGCAAGACCTAAAGGACCATATGCGAAATGCTGGTGATGTTTGTTACTCTGAAGTGTACCGTGAGGGTGGTGGTACTATAGGAATTGTAGACTACACAAACTATGATGACATGAAGTATGCTATCAGGAAACTTGATGATTCTGAATTTAAGAATGCCTTCTCAAAGGCCTATATAAGGGTGAAGGAGTATGATGGAAAGCGCAGCCGTTCATACTCACGAAGCCGAAGCCGAAGTCGAGGTCGCAGCTACAGCAGAAGCAGGAGTCCAAGCAAGTCTCCCAAGGGAAAGTCATCACGCCGTTCAGCATCTAGATCTCGATCGAGATCAGCTTCTTCCCGTTCAAGATCAGAGTCAAAGGGGCGCTCTCCATCAAGATGA
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| Protein seq | MMWIAEGRMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVEFEDPRDAEDAIRGRDGYNFDGNRLRVELAHGGRGNSSSFNNSGGGGRRGGVSRHTEYRVLVTGLPSSASWQDLKDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIRKLDDSEFKNAFSKAYIRVKEYDGKRSRSYSRSRSRSRGRSYSRSRSPSKSPKGKSSRRSASRSRSRSASSRSRSESKGRSPSR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0673500 | OsNip_07t0673500-01 | Chr07 | 28469795 | 28474153 | - | RAP2018-11-26 | ||
| CDS seq | ATGAGTAGGCGCTGGAGCAGGACAATTTATGTCGGGAACCTCCCGGGCGACATCAGGGAGAGGGAGGTAGAGGATCTGTTCTACAAGTATGGACGCATTGTTGATATTGACTTGAAGATCCCCCCAAGGCCGCCTGGTTTTGCTTTTGTTGAGTTCGAAGATCCCCGTGATGCTGAAGATGCAATCCGTGGACGGGATGGCTATAATTTTGATGGGAACCGTTTGAGGGTGGAACTTGCACATGGTGGGAGAGGTAACTCTTCCTCCTTTAACAATTCTGGTGGAGGGGGACGTCGTGGGGGTGTATCTAGGCATACAGAGTATCGCGTTCTGGTTACTGGACTACCTTCTTCAGCATCATGGCAAGACCTAAAGGACCATATGCGAAATGCTGGTGATGTTTGTTACTCTGAAGTGTACCGTGAGGGTGGTGGTACTATAGGAATTGTAGACTACACAAACTATGATGACATGAAGTATGCTATCAGGAAACTTGATGATTCTGAATTTAAGAATGCCTTCTCAAAGGCCTATATAAGGGTGAAGGAGTATGATGGAAAGCGCAGCCGTTCATACTCACGAAGCCGAAGCCGAAGTCGAGGTCGCAGCTACAGCAGAAGCAGGAGTCCAAGCAAGTCTCCCAAGGGAAAGTCATCACGCCGTTCAGCATCTAGATCTCGATCGAGATCAGCTTCTTCCCGTTCAAGATCAGAGTCAAAGGGGCGCTCTCCATCAAGATCACCAGCAAGATCTCAGTCTCCAAATACTTCTCCTGCCAATGGTGATGCAGCAAGCCCCAAGAAACGCAGCCCAAGCAGGAGCCCCCCCAAGAAACGTAGCCCAAGCAGGAGCCCATCACGTTCCCGATCTCCTGATGCCAAGTCCGAATGA
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| Protein seq | MSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVEFEDPRDAEDAIRGRDGYNFDGNRLRVELAHGGRGNSSSFNNSGGGGRRGGVSRHTEYRVLVTGLPSSASWQDLKDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIRKLDDSEFKNAFSKAYIRVKEYDGKRSRSYSRSRSRSRGRSYSRSRSPSKSPKGKSSRRSASRSRSRSASSRSRSESKGRSPSRSPARSQSPNTSPANGDAASPKKRSPSRSPPKKRSPSRSPSRSRSPDAKSE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0673500 | OsNip_07t0673500-03 | Chr07 | 28469934 | 28474162 | - | IsoSeq | ||
| CDS seq | ATGATGGAAAGCGCAGCCGTTCATACTCACGAAGCCGAAGCCGAAGTCGAGGTCGCAGCTACAGCAGAAGCAGGAGTCCAAGCAAGTCTCCCAAGGGAAAGTCATCACGCCGTTCAGCATCTAGATCTCGATCGAGATCAGCTTCTTCCCGTTCAAGATCAGAGTCAAAGGGGCGCTCTCCATCAAGATGAGGATTTGTGCGGAGATCTAGGGATT
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| Protein seq | MMESAAVHTHEAEAEVEVAATAEAGVQASLPRESHHAVQHLDLDRDQLLPVQDQSQRGALHQDEDLCGDLGI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr07 | 28473696 | 28474018 | - | OsNip_07t0673500-03 | OsNip_07t0673500-01,OsNip_07t0673500-03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.745042 | 5.440167 | 8.883222 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0344100 | RBH | 10.623050 | 8.492687 | 18.920408 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g47630 | RBH | 2.695955 | 2.816921 | 1.574674 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0673500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0027400 | RBH | 1.542631 | 25.874638 | 18.728313 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0027430 | RBH | 0.807982 | 5.041889 | 7.416019 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0027250 | RBH | 2.983583 | 14.559884 | 28.461121 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0027000 | RBH | 0.723866 | 0.787945 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0027270 | RBH | 15.409935 | 45.626617 | 42.065681 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0461700 | RBH | 10.0034215 | 16.169128 | 43.8029805 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0027770 | RBH | 0.991888 | 2.299391 | 2.926234 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0475500 | RBH | 20.2566175 | 28.487003 | 39.894054 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0027040 | RBH | 0.861787 | 0.868639 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0027490 | RBH | 2.055401 | 32.241039 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0027200 | RBH | 15.752788 | 44.343723 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0027530 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0027070 | RBH | 0.745645 | 28.565962 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G027190 | RBH | 1.513977 | 8.644881 | 5.325560 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0026950 | RBH | 3.135380 | 24.081200 | 12.570477 |
