Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_07g0027000 | OGI:07077570 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr07:28077065-28081487 | ||||||||
| Gene Symbol | SRP33B, Os-SR33, OsSR33, SR33, OsSRp33b, Os-SRp33b | ||||||||||
| DNA seq | ggcatgatccagtggatataaatgtatttattacctgcaacttgagctaggaagtgcattaagcaaacaaacgacggaatgactctgttcaactttcttaccagtaccacaataatatacctaagtcaagtacagtgtcaaaatgaacaaaagacaaatcccaagttcaaatctataaataggcgtacagtatcatccagtaatctgaaagagcactgaacgtatgaaatagtactttggaagcgattcagaagtagtcgagggcgacagatatcaaaacgtttcaggaccatgattcctcgacactccgtccccagaagcacatcagcatcattcggacttggcctgaaaatgcgaacgggattagtttagatttccataaaagcaagcatgtaatggtataaagagctatatacatcaggagatcgggaacgtgatgggctcctgcttgggctacgtttcttgggggggctcctgcttgggctgcgtttcttggggcttgctgcatcaccattggcaggctaaccagaaataggtcaggtcagtcacaaaaacaaatcacacaaagtacgttagcaaaaacttacagaggtatttggagactgagatcttgctggtgatctgcaaaaagttccagaaataacacgattcaatatccagattccagaatgcagctttaacagtttgcttccaaaaagccttcacgcctcccaatcattggaatggccagatgcaagcaaaaagagctcatagaaattagaagagaacaaattccttaagttcaaaacattcagagtgtttagtgtcaaatgttacgtgacatattcgctagaacattcctccaaagtgatcccaacgagagagcaagcgagaaactcattcctcatttactcaatccaagcaaacacagtcattgcgccaccataatccatagcatcaatccttaatgctctagctccagtgtcccaaagcaattcttaggcccaggctctgattctgatgtaataagtcacagtacaacaggtcaacaaatatggatgatttttagctaccagagcagcacccagtttattaccatacctcagacaaccaatagaactgttgcatatagaagaaatcccaacctcgatttcccattatgcaatccctagatctccgcacaaatcctcatctaatgaacaaatcattgaggctttcaaatattggatactatccagttgagttaggtacgaaatatgtcacaccagataaactttgtaacaaatataccaacagtttcccacataaagttacactaggacaatcagtaaggttgattaaatttgattcataaagccaaagagatgtaacagttggttgagaatatgggatagcaaatgagaattgggatgacccatctttaacacagaaagattgcagaactaataaattgttcagacagttcaaggccaactaatcaaaaaatatttgatggcaaaaataccaccataaaatctatatacatgttatctttcgggtagcaggcaatattttctatatataattcataacatgaagaccaaggattcaatgtccaagagtgattcatcaatgttaccttgatggagagcgcccctttgactctgatcttgaacgggaagaagctgatctcgatcgagatctagatgctgaacggcgtgatgactttcccttgggagacttgctgtggggcatattaaactctggtcagtggccaatggtattattgaggtacattagaatgtaatcaccaccagaccttggactcctgcttctgctgtagctgcgacctcgacttcggcttcggcttcgtgagtatgaacggctgcgctttccatcatactccttcacctaaatattagtgagttgtattattggttacttttgggacaagttgatccaaaaaagtaaagtagaaataaacatgtgtgtacccttatataggcctttgagaaggcattcttaaattcagaatcatcaagtttcctgatctgcaagagataagcagtaaaaaaaataaacacaaaggaaggaatatgatgcagactacagtactgaaactgaaagacagtgctccaaaatcacatatctaacaagattatacaagtgtagtgaaatatgaaatgtagctacaaggcaccataagacaccaaaaatagagaagaaagagaatacttacagcatacttcatgtcatcatagtttgtgtagtctacaattcctatagtacctgtagcaaacaaaagtgtgtatcaactatggtcacagcaataatagcattcacTttttttttgcttaatcaaattgctgaaaactgataataatggtgtccagctgaatagattatagtatctactacctataaactaaatgcctaaaatatagtattatctttggttgactctgcattttcttgctggggtataacatggaatgaatgttgcaaaattagacgcacaaactagagtaccaaatgtcattttttaagacaatggaaatggtaggaccaattgtcaatacttaggcattcatcaacttatgagtaactcatcacacgacatcaattcgtttcaagaattgcaatctgacgtaataaaaaagttcatttatatcttaaaaatcaactggtttgacagggtggtgtatccaattggtcatccaatccatagagaacttatgaagagctatggcaaacaccattgttacagtaagcaaagaactactgtagggaccaaacagacttaccaccaccctcacggtacacttcagagtaacaaacatcaccagcatttcgcatatggtcctgacacaacattcataggcaaggtttagcttcaaagagaatgagggaaatcatgaaagacaaaagcaaagcagcagaaaagtggatagaacaaattgtctttagcagacctttaggtcttgccatgatgctgaagaaggtagtccagtaaccagaactgtcaagatgtacacaaatgatttcagattagtatatataaacagaaaatcgagcatttataagtggatctgaaatcagcattcagtatcataccgcgatactctgtatgcctagatacacccccgcgacgtccccctccaccagaattgttaaaggaggaagagttacctctcccaccatgtgcaagttccacctgtgcatatcggagcatcagatatgtgaacacagaagagcaaattaccaacatctcatagcacctaccctcaaacggttcccatcaaaattatagccatcccgtccacggattgcatcttcagcatcacggggatcttcgaacttcatggcaaggcaacaaatatagacagtcaggatattcaataaaatccaaaagtagacaagtagctgctagaagcatacagttatcaattaacataaggaggtcatattacttgttataaccatcaagaaatccaatagttccaataaatacattcaaacttaaagaacctaacagtgctgcgcaacttacctcaacaaaagcaaaaccaggcggccttggggggatcttcaagtcaatatcaacaatgcgtccatactgcaggaaaaaaaactgcagtgttagacccttacacaaattagtgcaaaatccaaaactaatgaggcgagtggaagacagaagtccaattatttaatgtgaatgttacaaccgcaaatgccaacacggcaacacctagatgttagaagagtgtcaacaaggtactaactagttgacaattcaaggcacaaaatcgtttccttcctggggagcttaatcgaagagattaacaaaactaccaaccttgtagaacagatcctctacctccctctccctgatgtcgcccgggaggttcccgacataaattgtcctgctccagcgcctactcatccttccttctgcaatccacatcatcaaatagagcaattatactattagaactcacacttttacagaactgatgcattcaaccaaaacaggtaacaccaaattgaaacttcacactaaaattccccgcacaaaaagttcactgtttcaggttttaagtgcggaaaaggaaggcggttaggcgggcatggggggttgaactgaaccccaaactggaccacaaattttagggcaaagagataaggttccagatctagaagagaagctaaaggtcgaggcgaagagagaaggtgcgggatgagagagagagggtgttcgtactggttgctcaccggcgaggacgcggcggaagtagcaggacgccggcgccgctgctcgcgtggcggagatcggcggctgctcggcgcaggcggcgggcgaactcgcgaggcgaggcgacgagacgagacgaggggtttggtcgtgtctgacgtcgtatactcgtgtggtgtattcatatggcctaagttggttgggccgcat
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| CDS seq | atgcggcccaaccaacttaggccatatgaatacaccacacgagtatacgacgtcagacacgaccaaacccctcgtctcgtctcgtcgcctcgcctcgcgagttcgcccgccgcctgcgccgagcagccgccgatctccgccacgcgagcagcggcgccggcgtcctgctacttccgccgcgtcctcgccgaaggaaggatgagtaggcgctggagcaggacaatttatgtcgggaacctcccgggcgacatcagggagagggaggtagaggatctgttctacaagtatggacgcattgttgatattgacttgaagatccccccaaggccgcctggttttgcttttgttgagttcgaagatccccgtgatgctgaagatgcaatccgtggacgggatggctataattttgatgggaaccgtttgagggtggaacttgcacatggtgggagaggtaactcttcctcctttaacaattctggtggagggggacgtcgcgggggtgtatctaggcatacagagtatcgcgttctggttactggactaccttcttcagcatcatggcaagacctaaaggaccatatgcgaaatgctggtgatgtttgttactctgaagtgtaccgtgagggtggtggtactataggaattgtagactacacaaactatgatgacatgaagtatgctatcaggaaacttgatgattctgaatttaagaatgccttctcaaaggcctatataagggtgaaggagtatgatggaaagcgcagccgttcatactcacgaagccgaagccgaagtcgaggtcgcagctacagcagaagcaggagtccaagcaagtctcccaagggaaagtcatcacgccgttcagcatctagatctcgatcgagatcagcttcttcccgttcaagatcagagtcaaaggggcgctctccatcaagatcaccagcaagatctcagtctccaaatacctctcctgccaatggtgatgcagcaagccccaagaaacgcagcccaagcaggagcccccccaagaaacgtagcccaagcaggagcccatcacgccaagtccgaatgatgctgatgtgcttctggggacggagtgtcgaggaatcatggtcctga
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| Protein seq | MRPNQLRPYEYTTRVYDVRHDQTPRLVSSPRLASSPAACAEQPPISATRAAAPASCYFRRVLAEGRMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVEFEDPRDAEDAIRGRDGYNFDGNRLRVELAHGGRGNSSSFNNSGGGGRRGGVSRHTEYRVLVTGLPSSASWQDLKDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIRKLDDSEFKNAFSKAYIRVKEYDGKRSRSYSRSRSRSRGRSYSRSRSPSKSPKGKSSRRSASRSRSRSASSRSRSESKGRSPSRSPARSQSPNTSPANGDAASPKKRSPSRSPPKKRSPSRSPSRQVRMMLMCFWGRSVEESWS |
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| Function | Serine/arginine-rich-splicing factor SR34 [UniProtKB/Swiss-Prot:O22315] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_07g0027000 | OsARC_07g0027000.01 | Chr07 | 28077065 | 28081487 | - | NAM | ||
| CDS seq | atgcggcccaaccaacttaggccatatgaatacaccacacgagtatacgacgtcagacacgaccaaacccctcgtctcgtctcgtcgcctcgcctcgcgagttcgcccgccgcctgcgccgagcagccgccgatctccgccacgcgagcagcggcgccggcgtcctgctacttccgccgcgtcctcgccgaaggaaggatgagtaggcgctggagcaggacaatttatgtcgggaacctcccgggcgacatcagggagagggaggtagaggatctgttctacaagtatggacgcattgttgatattgacttgaagatccccccaaggccgcctggttttgcttttgttgagttcgaagatccccgtgatgctgaagatgcaatccgtggacgggatggctataattttgatgggaaccgtttgagggtggaacttgcacatggtgggagaggtaactcttcctcctttaacaattctggtggagggggacgtcgcgggggtgtatctaggcatacagagtatcgcgttctggttactggactaccttcttcagcatcatggcaagacctaaaggaccatatgcgaaatgctggtgatgtttgttactctgaagtgtaccgtgagggtggtggtactataggaattgtagactacacaaactatgatgacatgaagtatgctatcaggaaacttgatgattctgaatttaagaatgccttctcaaaggcctatataagggtgaaggagtatgatggaaagcgcagccgttcatactcacgaagccgaagccgaagtcgaggtcgcagctacagcagaagcaggagtccaagcaagtctcccaagggaaagtcatcacgccgttcagcatctagatctcgatcgagatcagcttcttcccgttcaagatcagagtcaaaggggcgctctccatcaagatcaccagcaagatctcagtctccaaatacctctcctgccaatggtgatgcagcaagccccaagaaacgcagcccaagcaggagcccccccaagaaacgtagcccaagcaggagcccatcacgccaagtccgaatgatgctgatgtgcttctggggacggagtgtcgaggaatcatggtcctga
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| Protein seq | MRPNQLRPYEYTTRVYDVRHDQTPRLVSSPRLASSPAACAEQPPISATRAAAPASCYFRRVLAEGRMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVEFEDPRDAEDAIRGRDGYNFDGNRLRVELAHGGRGNSSSFNNSGGGGRRGGVSRHTEYRVLVTGLPSSASWQDLKDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIRKLDDSEFKNAFSKAYIRVKEYDGKRSRSYSRSRSRSRGRSYSRSRSPSKSPKGKSSRRSASRSRSRSASSRSRSESKGRSPSRSPARSQSPNTSPANGDAASPKKRSPSRSPPKKRSPSRSPSRQVRMMLMCFWGRSVEESWS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_07g0027000 | OsARC_07g0027000.02 | Chr07 | 28077078 | 28081433 | - | IsoSeq | ||
| CDS seq | atgatggaaagcgcagccgttcatactcacgaagccgaagccgaagtcgaggtcgcagctacagcagaagcaggagtccaagcaagtctcccaagggaaagtcatcacgccgttcagcatctagatctcgatcgagatcagcttcttcccgttcaagatcagagtcaaaggggcgctctccatcaagatcaccagcaagatctcagtctccaaatacctctcctgccaatggtgatgcagcaagccccaagaaacgcagcccaagcaggagcccccccaagaaacgtagcccaagcaggagcccatcacgttcccgatctcctgatgccaagtccgaatgatgctgatgtgcttctggggacggagtgtcgaggaatcatggtcctgaaacgttttgatatctgtcgccctcgactacttctgaatcgcttccaaagtactatttcatacgttcagtgctctttcagattactggatgatactgtacgcctatttatagatttgaacttgggatttgtcttttgttca
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| Protein seq | MMESAAVHTHEAEAEVEVAATAEAGVQASLPRESHHAVQHLDLDRDQLLPVQDQSQRGALHQDHQQDLSLQIPLLPMVMQQAPRNAAQAGAPPRNVAQAGAHHVPDLLMPSPNDADVLLGTECRGIMVLKRFDICRPRLLLNRFQSTISYVQCSFRLLDDTVRLFIDLNLGFVFCS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr07 | 28077409 | 28077498 | - | OsARC_07g0027000.02 | OsARC_07g0027000.01,OsARC_07g0027000.02 | All |
| A5 | Chr07 | 28080976 | 28081298 | - | OsARC_07g0027000.02 | OsARC_07g0027000.01,OsARC_07g0027000.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.723866 | 0.787945 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0673500 | RBH | 5.745042 | 5.440167 | 8.883222 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g47630 | RBH | 2.695955 | 2.816921 | 1.574674 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0673500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0027400 | RBH | 1.542631 | 25.874638 | 18.728313 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0027430 | RBH | 0.807982 | 5.041889 | 7.416019 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0027250 | RBH | 2.983583 | 14.559884 | 28.461121 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0017230 | RBH | 0.671254 | 1.436825 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0027270 | RBH | 15.409935 | 45.626617 | 42.065681 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0461700 | RBH | 10.0034215 | 16.169128 | 43.8029805 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0027770 | RBH | 0.991888 | 2.299391 | 2.926234 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0475500 | RBH | 20.2566175 | 28.487003 | 39.894054 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0027040 | RBH | 0.861787 | 0.868639 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0027490 | RBH | 2.055401 | 32.241039 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0027200 | RBH | 15.752788 | 44.343723 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0041210 | RBH | 1.430228 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0027070 | RBH | 0.745645 | 28.565962 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G027190 | RBH | 1.513977 | 8.644881 | 5.325560 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0026950 | RBH | 3.135380 | 24.081200 | 12.570477 |
