Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0640300 | OGI:07073910 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:26646515-26647959 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTCAACAAATGTATAGGTGGTCCCATAAAGTTTTGTTTATTCGATTACAGCAAACTGTAGGTAGGTAGTAATACTGTGAGCTGGAAACAGTAGGAAACTGTAAGTTCTAAATCTCATTGTTTTTGACATTTTCTCCATCGAGAATGATATGCATGTGAGGAAGCTTATTTTTCATGTAATTCACAACGTGAGCTTGAGTTGGCTGCAGCTTGGAGAGGTCGTCGGTGGATGATTTCCCTTGGAGAGTGATAGAAATAGCTGTTGATTTGGATGCAATAATCTTGGAAACTGCTTGCAGGTAGTTGGTGTGGATGAGTTGCACCTCATGGTTCCTGAAGAAGAGTAATGCGTTTTATGATGTATAGATAGGCATATACAATGTACAGAGCACTGAAATGCATGAAGCATGTTAAATATAAAATATAAGCTTGAAAACTATGTAATTAGGAAGCTATAGCTGAACATGGATAGCGAGAGCTAACCTATTTTTTTCTGGTTGTTGGTCCATCTGTGTTGGCAATGGACGTTGTGTTTGCAGAAGAAATTTTGTGAAGGAAGGACTGTGGTATGAGAAATTGAGCAGTGCACATGTGGTGGTGTTGTGGGTGATTCTTATAGTATTTCACTGGTGATAATAAGGATACTAATTTTGTTTTCTCATTTATTGCAGAATCAGATATGATTAAGAATCATATCTTGAGTCTTTTATTATTGAGGATAAAATATGGAATAGATATAAATGCCATATTTCAGATTTGGTTGGTTTTGCCAGTAAACTTGCAAGTAATGGTTGCAAAGATAAGTTAGCAATGATGGTGATAGATTTGGTGCAGGTTTAAATTTCTTAAGGAAATTGTTAGCAGTGATGGTGACAGATTTGGTGCAGGTCTAATTTTTTTAAGAAAAACTATATATGTTGCTGATAAAAGGCCATGTTGTAGGAGAATTGTGAAGGATTTGAAGAGTTGTACCTGTTCCTTGTGACCCGATGGCTGTTGATCAGCTATCTTTGGCTGCTGCAGCTGGTTTTCCTCTCCATTGGTGGAGGCTTCCATTCTGAATTTAGCAGTCAAATTAGTAGCAAAACATACATACATATATATATGCGCGCGCGTGACACACATATATATGTTTATAGGCTGAAACTTAAGGTGTGCACGTACACTTTTTTATGGCGCTTAGAATTTTGTCCTGGAGAAAATTCTGTTGACGGTTGTTTTTCCTTGCTGAGATCTACTTGTTGGGAATGATAAAGTTGATTTGTTGCAACCTGAATAGTGTTTGCAATTGCTGGGCTGATGCATATATGAAAGGAATTTAGTTGAAGAATAGTTTGTATATTCTGCAAAAAGAACTTGTATCAGTGCAGTACCTTGGTTGATCAATGTGTAACTCCTTTTCAAATTGAAGAGCTCTCTTTGCTGAAGGTATAATTTGGTTTACTG
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| CDS seq | GTAAACCAAATTATACCTTCAGCAAAGAGAGCTCTTCAATTTGAAAAGGAGTTACACATTGATCAACCAAGCCCAGCAATTGCAAACACTATTCAGGTTGCAACAAATCAACTTTATCATTCCCAACAAGTAGATCTCAGCAAGGAAAAACAACCGTCAACAGAATTTTCTCCAGGACAAAATTCTAAGCGCCATAAAAAAGTAATGGAAGCCTCCACCAATGGAGAGGAAAACCAGCTGCAGCAGCCAAAGATAGCTGATCAACAGCCATCGGGTCACAAGGAACAGGAACCATGA |
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| Protein seq | VNQIIPSAKRALQFEKELHIDQPSPAIANTIQVATNQLYHSQQVDLSKEKQPSTEFSPGQNSKRHKKVMEASTNGEENQLQQPKIADQQPSGHKEQEP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0640300 | OsNip_07t0640300-00 | Chr07 | 26646515 | 26647959 | - | RAP2018-11-26 | ||
| CDS seq | GTAAACCAAATTATACCTTCAGCAAAGAGAGCTCTTCAATTTGAAAAGGAGTTACACATTGATCAACCAAGCCCAGCAATTGCAAACACTATTCAGGTTGCAACAAATCAACTTTATCATTCCCAACAAGTAGATCTCAGCAAGGAAAAACAACCGTCAACAGAATTTTCTCCAGGACAAAATTCTAAGCGCCATAAAAAAGTAATGGAAGCCTCCACCAATGGAGAGGAAAACCAGCTGCAGCAGCCAAAGATAGCTGATCAACAGCCATCGGGTCACAAGGAACAGGAACCATGA
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| Protein seq | VNQIIPSAKRALQFEKELHIDQPSPAIANTIQVATNQLYHSQQVDLSKEKQPSTEFSPGQNSKRHKKVMEASTNGEENQLQQPKIADQQPSGHKEQEP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0522100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g44670 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0640300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0024950 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0025030 | RBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0024890 | RBH | 1.974546 | 5.043419 | 18.939560 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0024780 | RBH | 1.177987 | 0.390499 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0024910 | RBH | 6.358383 | 18.690557 | 16.893227 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0438400 | RBH | 1.830964 | 6.047397 | 4.5269475 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0025440 | RBH | 0.607454 | 0.420413 | 3.328718 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0435500 | SBH | 0.0409375 | 0.117331 | 0.006656 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0024720 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0024840 | RBH | 0.099591 | 1.258182 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0024760 | RBH | 3.094018 | 8.910427 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0024970 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0024670 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G024660 | RBH | 0.702856 | 2.656953 | 3.489969 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0024720 | RBH | 0.0 | 0.0 | 0.0 |
