Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0583000 | OGI:07066010 | 4/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:23601302-23604108 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAGCACCAAGTATAACTGGGTATATATCGATCTGTTATCTGTATGACTTAAGGCACGGTACAACGACAAGGTAACATCATAGCGAACTAGCTATGCCATAAGTTTCTCCTTTTGGAGTGACGAACAGCTACATATATCAACCATGTTCCTGAAGGTAACCGAGACTATATATATAAGCGGCCACTACAGTTCTCAGAAGTATCCAGCATTTTGGGCTGTCCTGATGATCTGAAAGAGAGCTGCACAAAGAAAAGAGTAGAAAACACAATGACTTGGTAAGATGTTCATAAAGTTATGATGAAAAAGATGGAAACTACTGCCAAGGCTGTAATGAAGACTGAAATAGTTGCAGGATTTTTCATGCAAGGAGTTCTATTTTACCAACATTAGACTGTCTGTTCCATTTGAATCCTTAACTAGGGTAACATCAAACCTTCCTCTTCTATTTTCCAAAGTCTTAAGGAGAAGCATATATTTTTTTGAGAAGTTTATAAGCATATAAGGATTTATTGCCTGGCAACAGATTAGTAGCTGATGTCCATGGGTGTGGTAGCTGCAGCAGTTAACAACCATATCTGGAGTAAACCATGAGACTATTTTTGGAATTAATCAGAGCAGGAATCTAGCTTCTTATTCTTTGAAAAGGATTTGACTAATCTAAGATCAAAACAGGAAACACATAGATACTTTCCCACAAAGTGATAACATCCTAAAGCAAAACTAATGATGTGTACTACAGCTACCCCCATACACGACTACTGATAATAGTACTAGATTAGCACTTTCGCAATTTAGCACAGTTTAGTCCTGGAGAGAGCACAGAAGCAATACCCATAAAAACAAGAACTAAGGGTGAAAATAGTTAAAATCTATTTAGGTTGGTAAAGGCATTCTGAGTTATGAAGAGTATGAGTGAAGATAAATAGCTCAACCATTCACCACAAATATATAAAAAAAGAATGTAACTTACATGAACCAACAACCACAAAGACGAAAAATCCAAGCACAATGGGTCCAACAGGATAATCATTTCCTTTCTTGACTGTCTCAGGAACAGAACCCCTCTTGGTGACGTTCTTCTCAAACCGTGCCACTTTCCTATCTGAGAGACGCCTTGAGGTAGTCTGTTTCATCATCAGCAAATAATATCAGAAGATATCATAAAAGAACTTGTTTGAAGAAAGGAAAGAAATATGCAGTGTATTTGGACAGAATCCCAAGGAAATGACATTCATGATGCCAGTAAATTCATACAGAAACTTTCATCTATTCAGGAAAAAAAATGTTACTCAAGATGCAAAGCACAATGGTGCCATCACCAGCTAACTGATGCCTGCTACCAAATATTTCTGACAACATGTTGATCTGTCCGACTTGCATGTTAAGGGAGTAATTTTTACATTACCCCCTAGAACCAGTAAGCAGGGTTTGAAAGTTGATCATAACTAAATCCATCGAAATTATAAAATCAAGCGTATTGGGTGAGTTATATGTTTTTGTGCCTTTATTATATGTATTAGATGATACTCAATGGCACGTGATAATGCTGACAAGAAAATTAGAAATGCTTTACTATATCATAAAAATAGTAATATCCTCTGCTCGATTTGGTGGACCCTGATTCCAAACTACTCTCTCTGTCCCATAAAAAAACCAACCTAGTACTGGATGTCATCCTAGTACTACGAATCTGGACATACCTCTATCCAGATTCATCGTACTAGAATATGTCACATCCAGTCCTAGATTCGTTTTTTTCGGGACAGAGCCACAGAGGGAGTAATCCCTAATCTTCACATCTTATCCTGGAACACATTTTCGAATCAAAGCATAGGAGTCGAAAACAATAAAACCATACATTAAAATATATGCTAAATTGAAGTTACGCAGGATCGGAAGCGTTGTAGTGTGCTAGACGACAAATGCAAAATTGCATGGGTCAATTAATACTCTTCGTCGACATTTCAAATGCGTTATAAAGTAATCTATATACTACCAAATATGATGGCTAGCCCACGTAAATGCATAACCAGGTTTTCTAGGTCTTTGATAGGCCAATCCAGAATATGCGGTTACATGAAGTGATGTAATGCAAGACAACTAGTGAATGTTCGCTCTCGGATCAGGAAAATCAATCTCTGCGTCACTGTTATTCTAAACCTGACATTAGTTAGTCAGCAACAAAACTTGATAAACTTGTTACCAGATCCTCTAAATCTTGCCAAAGGATAATATTGAAGCATAGCCTAAAAATAAACATATCTTTTGTTACGAAATGAACGGTTTAAACTACAGGTAGGCACGATCATCATAGAAGTACACTACACTATCTACATACAGGAGAAATATGAATTCAAAAGCAAACAGATGTGCACAGCCACGGATCTTCCTGCGAAGATTCAGAAGAAGAGGAACAGAAACAAGTAAACCAGAAATCAACATTTCGTCGGTTCTATTTCACAAAATCATCGCCAGGACAGGGGCGGATCCAACTTGGGACACCCAAACTTTTCGGGGAACAAACAAACTGTTACTTGTATTAAGGTTAAGGCACTGAAATTAAGGGAAGAGCTTCTTCCAGATCTAGAAGAGAAGCTAGGGTTAACGAACGAACACAAGCAAATTCCAGAACCGATGGGAGAGAGAGATGAATCAGAAAAAGGATGTGATGCTCACCATGATCCTCTCCCCTGCTCTGCTCGCCAGATGGAGATCGCCGCCACTCCCCTGTTCAGCCGCGACTCGTCTTGGCGGCGCAAGGAGGAGGAGACGAGAGGTTTTCTTTCTGTTACGCCACAAAGGGAAGG
More
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| CDS seq | ATGACTACCTCAAGGCGTCTCTCAGATAGGAAAGTGGCACGGTTTGAGAAGAACGTCACCAAGAGGGGTTCTGTTCCTGAGACAGTCAAGAAAGGAAATGATTATCCTGTTGGACCCATTGTGCTTGGATTTTTCGTCTTTGTGGTTGTTGGTTCATCTCTCTTTCAGATCATCAGGACAGCCCAAAATGCTGGATACTTCTGA |
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| Protein seq | MTTSRRLSDRKVARFEKNVTKRGSVPETVKKGNDYPVGPIVLGFFVFVVVGSSLFQIIRTAQNAGYF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0583000 | OsNip_07t0583000-01 | Chr07 | 23601302 | 23604108 | - | RAP2018-11-26 | ||
| CDS seq | ATGACTACCTCAAGGCGTCTCTCAGATAGGAAAGTGGCACGGTTTGAGAAGAACGTCACCAAGAGGGGTTCTGTTCCTGAGACAGTCAAGAAAGGAAATGATTATCCTGTTGGACCCATTGTGCTTGGATTTTTCGTCTTTGTGGTTGTTGGTTCATCTCTCTTTCAGATCATCAGGACAGCCCAAAATGCTGGATACTTCTGA
More
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| Protein seq | MTTSRRLSDRKVARFEKNVTKRGSVPETVKKGNDYPVGPIVLGFFVFVVVGSSLFQIIRTAQNAGYF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.357385 | 1.209808 | 32.522888 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0637501 | SBH | 0.804231 | 0.827406 | 30.533283 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g39400 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0583000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0021030 | RBH | 2.459962 | 44.501190 | 12.784475 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0021050 | SBH | 0.999481 | 12.477225 | 9.223112 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0020970 | RBH | 6.024480 | 25.711979 | 26.652895 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0020820 | SBH | 0.039707 | 1.372404 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0020930 | SBH | 23.062077 | 32.089886 | 60.788589 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0386500 | RBH | 47.8371655 | 146.940636 | 456.0756375 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0021360 | SBH | 0.056203 | 0.473162 | 0.716327 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0296600 | SBH | 27.220205 | 27.9293185 | 62.694429 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0020670 | SBH | 1.360343 | 0.920945 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0020830 | SBH | 3.362893 | 21.801743 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0020720 | SBH | 0.000000 | 94.624092 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0020950 | SBH | 3.188917 | 4.633620 | 4.555665 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0020670 | SBH | 0.047339 | 7.732351 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G020560 | SBH | 0.964138 | 10.937870 | 11.336363 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0020620 | SBH | 6.783033 | 53.257660 | 16.743662 |
