Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0020670 | OGI:07065980 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:24642870-24648587 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atacgattaattaattaatctcaatgatggtaaatacattcccagtcatatgggctgtagagcctgagcgtggacctgccagagtacttaagccgcttgtggtcgtctttgtcggtctagagtaaatttagtttctgaggtactaaaattttttttatcttatagtacctcacaaaaactgtaaaattgctcacgataacatggatctgtcctcgtttttctttttcaacgagaaagaatcctcacctctccttggcgccaaggacgccgaaatacacgaggaaccacgcgaacacgatgatcgcggagcacgcgagcaagttgccgtacacggctgtaacctcgtaaacccacgcgaagctccacaggatcgccgccctgacggcccggttcacggcggccaccgcggtccgcagccaccgcggccagccactggacgacgacgcgtccgccatctgcacggggccgagcaagagccacaccagcgccatcagcgacatcagcatggtcgcggacaggctcctcgcccacttcagctgctcccgccgccgcttcatgcccatggcaacgccgccacggtgggcgtgaggcgacgacgggtggtcggccggcgccggcgccggcgccggcgcgcgcctcgggcagcagccgccggcgagcgctttcaccagcagccaggcgagctcgagcagcaccgtggagacggcgaagaaggcgaacacgacgaggccgaacgccacgagcgccctcgtcatgcgcgtgtcggacgggacgccggcgtcgcggaacgcgcgctgcacgtacaggaacatggacccgatgcccgacgcctgctggaatgccttggcgaccagcgcgctgacgatgttgcgccggaccggctccgtcggcctcgccagcagctccagccagagcgcgcgctcctccctccaccgggttcgccacgccggcgttgccaccgtgtcgtcgcagccgacgtcgtgcggctcgccgagctccgtttttgtctcgagcagacggagctcggcatcctccagtgacaacgtcctggagaggacgcgacgtgcgtggtccttggtcaagagccactgtggcaactccggcatgaggaggacggcgaagccgagcaacgccgggatggccgtgccggtggctacggtcagccgccaggcgacgcgcacggggaggttcaagaatctcggggagaagcagaggccgccgaggatgcaaccgaggcacacgaagccgtcagggtgcgaggtgaggccgcggtgcagcgacgacgggctgagctcgccggcgtaggccgggacgctcatgagcgccaggcccatgccgacgccgttgacgaagacgccggcctcgaacgccgcgaagctggtggcgagcccgcgggcgagcgcgcccgcgcagagcaccgccgccgagagcagcacggtgcagcggtcgccgacgacgcactgggctcccacggcggcgagcgcgccgaggacgcaggacgcgacggcgacgcacgccaggagcttcacgccgggcggctccggcagcgtggccgagccgcacaccatgacgaggtctgcatcgatcaccaatgcgctcgcaagatcacgccgtgcttgatggacagatcgatgcatctgcgcgcgcgcatggatgggatcgctggttcttaccgtagcccaggaggagaggcgtcgccgacgagagcacggcggtgacaaagccatatttgttcttaggacgcctcatctccggcaagaaaagaacaccgtctctattcactaatcctaccaacaaatttcgagtggtgaatgctgatgaaattctctgcaaatctgataaaaagaatactgatgcagatgagaggaagcgatttgagtggatctgtaaatcataagagcacgaacggtctcaagacgaagatggctctgaatcatacccgtcttaaacacaacgatcttcccaacacctgatttttttttttcaaaggtaaatctcttctcataagactaatccaccttcagaatcattccaaggcttccttcttctcgttgaaatattggagtttcctcaactctcatccatgtgttgtgatctcccttttgaaagacgcagctgctgttgcagcgacgacgtaacaaactcctgaaaccaagtagtccacggccgaaaaactctctccaggtagttcattagtagcaacagctaaccgatttactagggagcaagtagttaggcttgaaaatgccagtcaaagccatactttccgaagataataatagtagaagatatatataacattttacatcctacaggagcaatagatagacagatttccaccgaaacatcatttgataaatctgaatacccatcctgaatcctgcatccgccacaccctatgagcgttgtacgatgttggattaaacacacaaacataagttttgctacttcttccgtttctcaaaatatagtaacacagtactaaataagacaacatagatccatactactaaattagttctcatgtagtattagattgttattttttttatccgtcgctataattttagtacgaatgaactactggggtagtattgaactacatctaactcttgaaaggttactcctagaatcttagctccccaaacaatcttgatttttatccaaattcaaacacttcagaccccccaccccccccccccccccccccgggcgggaatagttcagattcttacctgatttaaaaacctacaagcttcagcctaaagaaatccaagaaataaactagtagccaaaaactagaaaaacgagtttctccggattgtcaccatcttctaagaatctctagctcccaaaacatgtagttgaggaacataaatacagagcacgtcaagactggaacaaacatgaacatccagattaagcaccaagtataactgggtatatatcgatctgttatctgtatgacttaaggcacggtacaacgacaaggtaacatcatagcgaactagctatgccataagtttctccttttggagtgacgaacagctacatatatcaaccatgttcctgaaggtaaccgagactatatatataagcggccactacagttctcagaagtatccagcattttgggctgtcctgatgatctgaaagagagctgcacaaagaaaagagtagaaaacacaatgatttggtaagatgttcataaagttatgatgaaaaagatggaaattactgccaaggctgtaatgaagactgaaatagttgcaggatttttcatgcaaggagttctattttaccaaaattagactgtctgttccatttgaatccttaactagggtaacatcaaaccttcctcttctattttccaaagtcctaaggagaagcatatatttttttgagaagtttataagcatataaggatttattgcctggcaacagattagagtagctgatgtccatgggtgtggtagctgcagcagttaacaaccatatctggagtaaaccatgagactatttttggaattaatcagagcaggaatctagcttcttattctttgaaaaggatttgactaatctaagatcaaaacaggaaacacatagatactttcccacaaagtgataacatcctaaagcaaaactaatgatgtatactacagctacccccatacacgactactgataatagtactagattagcactttcgcaatttagcacagtttagtcctggagagagcacagaagcaatacccataaaaacaagaactaagggtgaaaatagttaaaatctatttaggttggtaaaggcattctgagttatgaagagtatgagtgaagataaatagctcaaccattcaccacaaatatataaaaaaagaatgtaacttacatgaaccaacaaccacaaagacgaaaaatccaagcacaatgggtccaacaggataatcatttcctttcttgaccgtctcaggaacagaacccctcttggtgacgttcttctcaaaccgtgccactttcctatctgagagacgccttgaggtagtctgtttcatcatcagcaaataatatcagaagatatcataaaagaacttgtttgaagaaaggaaagaaatatgcagtgtatttggacagaatcccaaggaaatgacattcatgatgccagtaaattcatacagaaactttcatctattcaggaaaaaaaatgttactcaagatgcaaagcacaatggtgccatcaccagctaactgatgcctgctaccaaatatttctgacaacatgttgatctgtccgacttgcatgttaagggagtaatttttccattaccccctagaaccagtaagcagggtttgaaagttgatcataactaaatccatcaaaattataaaatcaagcgtactgggtgagttatatgtttttgtgcctttattatatgtattagatgatactcaatggcacgtgataatgctgacaagaaaattagaaatgctttactatatcataaaaatagtaatatcctctgctcgatttggtggaccctgattccaaactactccctctgtcccataaaaaaaccaacctagtactggatgtcatcctagtactacgaatctgaacatacctctgtccagattcattgtactagaatatgtcacatccagtcctagattcgtttttttcgggacagagccacagagggagtaatccctaatcttcgcatcttatcctggaacacgttttcgaatcaaagcataggagtcgaaaacaataaaaccatacattaaaatatatgctaaattgaagttacgcaggatcggaagcgttgtagtgtgctagacgacaaatgcaaaattgcatgggtcaattaatactcttcgtcgacatttcaaatgcgttataaagtaatctatatactaccaaatatgatggctagcccacgtaaatgcataaccaggttttctaggtctttgataggccaatccagaatatgcggttacatgcagtgatgtaatgcaagacaactagtgaatgttcgctctcggatcaggaaaatcaatctctgcgtcactgttattctaaacctgacattagttagtcagcaacaaaacttgataaacttgttaccagatcctctaaatcttgccaaaggataatattgtagcatagcctaaaaataaacatatcttttgttacgaaatgaacggtttaaactacaggtaggcaggatcatcatagaagtacactacactatctacatacaggagaaatatgaattcaaaagcaaacagatgtgcacagccacggatcttcctgcgaagattcagaagaagaggaacagaaacaagtaaaccagaaatcaacatttcgtcggttctatttcacaaaatcaacgccaggacaggggcggatccaacttgggacacccaaacttttcggggaacaaacaaactgttacttgtattaaggttaaggctctgaaattaagggaagagcttcttccagatctagaagagaagctagggttaacgaacgaacacaagcaaattccagaaccgatgggagagagagatgaatcagaaaaaggatgtgatgctcaccatgatcctctcccctgctctgctcgccagatggagatcgccgccactcccctgttcagccgcgactcgtcttggcggcgcaaggaggaggagacgagaggttttctttctgttacgcc
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| CDS seq | atgactacctcaaggcgtctctcagataggaaagtggcacggtttgagaagaacgtcaccaagaggggttctgttcctgagacggtcaagaaaggaaatgattatcctgttggacccattgtgcttggatttttcgtctttgtggttgttggttcatatcatcaggacagcccaaaatgctggatacttctgagaactatccactcaaatcgcttcctctcatctgcatcagtattctttttatcagatttgcagagaatttcatcagcattcaccactcgaaatttgttggtaggattagtgaatagagacggtgttcttttcttgccggagatgaggcgtcctaagaacaaatatggctttgtcaccgccgtgctctcgtcggcgacgcctctcctcctgggctacgacctcgtcatggtgtgcggctcggccacgctgccggagccgcccggcgtgaagctcctggcgtgcgtcgccgtcgcgtcctgcgtcctcggcgcgctcgccgccgtgggagcccagtgcgtcgtcggcgaccgctgcaccgtgctgctctcggcggcggtgctctgcgcgggcgcgctcgcccgcgggctcgccaccagcttcgcggcgttcgaggccggcgtcttcgtcaacggcgtcggcatgggcctggcgctcatgagcgtcccggcctacgccggcgagctcagcccgtcgtcgctgcaccgcggcctcacctcgcaccctgacggcttcgtgtgcctcggttgcatcctcggcggcctctgcttctccccgagattcttgaacctccccgtgcgcgtcgcctggcggctgaccgtagccaccggcacggccatcccggcgttgctcggcttcgccgtcctcctcatgccggagttgccacagtggctcttgaccaaggaccacgcacgtcgcgtcctctccaggacgttgtcactggaggatgccgagctccgtctgctcgagacaaaaacggagctcggcgagccgcacgacgtcggctgcgacgacacggtggcaacgccggcgtggcgaacccggtggagggaggagcgcgcgctctggctggagctgctggcgaggccgacggagccggtccggcgcaacatcgtcagcgcgctggtcgccaaggcattccagcaggcgtcgggcatcgggtccatgttcctgtacgtgcagcgcgcgttccgcgacgccggcgtcccgtccgacacgcgcatgacgagggcgctcgtggcgttcggcctcgtcgtgttcgccttcttcgccgtctccacggtgctgctcgagctcgcctggctgctggtgaaagcgctcgccggcggctgctgcccgaggcgcgcgccggcgccggcgccggcgccggccgaccacccgtcgtcgcctcacgcccaccgtggcggcgttgccatgggcatgaagcggcggcgggagcagctgaagtgggcgaggagcctgtccgcgaccatgctgatgtcgctgatggcgctggtgtggctcttgctcggccccgtgcagatggcggacgcgtcgtcgtccagtggctggccgcggtggctgcggaccgcggtggccgccgtgaaccgggccgtcagggcggcgatcctgtggagcttcgcgtgggtttacgaggttacagccgtgtacggcaacttgctcgcgtgctccgcgatcatcgtgttcgcgtggttcctcgtgtatttcggcgtccttggcgccaaggagaggtga
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| Protein seq | MTTSRRLSDRKVARFEKNVTKRGSVPETVKKGNDYPVGPIVLGFFVFVVVGSYHQDSPKCWILLRTIHSNRFLSSASVFFLSDLQRISSAFTTRNLLVGLVNRDGVLFLPEMRRPKNKYGFVTAVLSSATPLLLGYDLVMVCGSATLPEPPGVKLLACVAVASCVLGALAAVGAQCVVGDRCTVLLSAAVLCAGALARGLATSFAAFEAGVFVNGVGMGLALMSVPAYAGELSPSSLHRGLTSHPDGFVCLGCILGGLCFSPRFLNLPVRVAWRLTVATGTAIPALLGFAVLLMPELPQWLLTKDHARRVLSRTLSLEDAELRLLETKTELGEPHDVGCDDTVATPAWRTRWREERALWLELLARPTEPVRRNIVSALVAKAFQQASGIGSMFLYVQRAFRDAGVPSDTRMTRALVAFGLVVFAFFAVSTVLLELAWLLVKALAGGCCPRRAPAPAPAPADHPSSPHAHRGGVAMGMKRRREQLKWARSLSATMLMSLMALVWLLLGPVQMADASSSSGWPRWLRTAVAAVNRAVRAAILWSFAWVYEVTAVYGNLLACSAIIVFAWFLVYFGVLGAKER |
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| Function | Polyol transporter 5 [UniProtKB/Swiss-Prot:Q8VZ80] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0020670 | OsLima_07g0020670.01 | Chr07 | 24642870 | 24648568 | - | NAM | ||
| CDS seq | atgactacctcaaggcgtctctcagataggaaagtggcacggtttgagaagaacgtcaccaagaggggttctgttcctgagacggtcaagaaaggaaatgattatcctgttggacccattgtgcttggatttttcgtctttgtggttgttggttcatatcatcaggacagcccaaaatgctggatacttctgagaactatccactcaaatcgcttcctctcatctgcatcagtattctttttatcagatttgcagagaatttcatcagcattcaccactcgaaatttgttggtaggattagtgaatagagacggtgttcttttcttgccggagatgaggcgtcctaagaacaaatatggctttgtcaccgccgtgctctcgtcggcgacgcctctcctcctgggctacgacctcgtcatggtgtgcggctcggccacgctgccggagccgcccggcgtgaagctcctggcgtgcgtcgccgtcgcgtcctgcgtcctcggcgcgctcgccgccgtgggagcccagtgcgtcgtcggcgaccgctgcaccgtgctgctctcggcggcggtgctctgcgcgggcgcgctcgcccgcgggctcgccaccagcttcgcggcgttcgaggccggcgtcttcgtcaacggcgtcggcatgggcctggcgctcatgagcgtcccggcctacgccggcgagctcagcccgtcgtcgctgcaccgcggcctcacctcgcaccctgacggcttcgtgtgcctcggttgcatcctcggcggcctctgcttctccccgagattcttgaacctccccgtgcgcgtcgcctggcggctgaccgtagccaccggcacggccatcccggcgttgctcggcttcgccgtcctcctcatgccggagttgccacagtggctcttgaccaaggaccacgcacgtcgcgtcctctccaggacgttgtcactggaggatgccgagctccgtctgctcgagacaaaaacggagctcggcgagccgcacgacgtcggctgcgacgacacggtggcaacgccggcgtggcgaacccggtggagggaggagcgcgcgctctggctggagctgctggcgaggccgacggagccggtccggcgcaacatcgtcagcgcgctggtcgccaaggcattccagcaggcgtcgggcatcgggtccatgttcctgtacgtgcagcgcgcgttccgcgacgccggcgtcccgtccgacacgcgcatgacgagggcgctcgtggcgttcggcctcgtcgtgttcgccttcttcgccgtctccacggtgctgctcgagctcgcctggctgctggtgaaagcgctcgccggcggctgctgcccgaggcgcgcgccggcgccggcgccggcgccggccgaccacccgtcgtcgcctcacgcccaccgtggcggcgttgccatgggcatgaagcggcggcgggagcagctgaagtgggcgaggagcctgtccgcgaccatgctgatgtcgctgatggcgctggtgtggctcttgctcggccccgtgcagatggcggacgcgtcgtcgtccagtggctggccgcggtggctgcggaccgcggtggccgccgtgaaccgggccgtcagggcggcgatcctgtggagcttcgcgtgggtttacgaggttacagccgtgtacggcaacttgctcgcgtgctccgcgatcatcgtgttcgcgtggttcctcgtgtatttcggcgtccttggcgccaaggagaggtga
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| Protein seq | MTTSRRLSDRKVARFEKNVTKRGSVPETVKKGNDYPVGPIVLGFFVFVVVGSYHQDSPKCWILLRTIHSNRFLSSASVFFLSDLQRISSAFTTRNLLVGLVNRDGVLFLPEMRRPKNKYGFVTAVLSSATPLLLGYDLVMVCGSATLPEPPGVKLLACVAVASCVLGALAAVGAQCVVGDRCTVLLSAAVLCAGALARGLATSFAAFEAGVFVNGVGMGLALMSVPAYAGELSPSSLHRGLTSHPDGFVCLGCILGGLCFSPRFLNLPVRVAWRLTVATGTAIPALLGFAVLLMPELPQWLLTKDHARRVLSRTLSLEDAELRLLETKTELGEPHDVGCDDTVATPAWRTRWREERALWLELLARPTEPVRRNIVSALVAKAFQQASGIGSMFLYVQRAFRDAGVPSDTRMTRALVAFGLVVFAFFAVSTVLLELAWLLVKALAGGCCPRRAPAPAPAPADHPSSPHAHRGGVAMGMKRRREQLKWARSLSATMLMSLMALVWLLLGPVQMADASSSSGWPRWLRTAVAAVNRAVRAAILWSFAWVYEVTAVYGNLLACSAIIVFAWFLVYFGVLGAKER
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0020670 | OsLima_07g0020670.02 | Chr07 | 24645791 | 24648587 | - | IsoSeq | ||
| CDS seq | atgattatcctgttggacccattgtgcttggatttttcgtctttgtggttgttggttcatctctctttcagatcatcaggacagcccaaaatgctggatacttctgagaactgtagtggccgcttatat |
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| Protein seq | MIILLDPLCLDFSSLWLLVHLSFRSSGQPKMLDTSENCSGRLY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr07 | 24646018 | 24646763 | - | OsLima_07g0020670.02 | OsLima_07g0020670.01,OsLima_07g0020670.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.360343 | 0.920945 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0582850 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g39400 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0582850 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0021020 | RBH | 0.000000 | 0.000000 | 0.624039 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0021050 | RBH | 0.999481 | 12.477225 | 9.223112 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0020960 | RBH | 0.0 | 0.0 | 1.205625 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0020820 | RBH | 0.039707 | 1.372404 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0020930 | RBH | 23.062077 | 32.089886 | 60.788589 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0386400 | RBH | 0.011602 | 0.11193 | 0.1195965 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0021360 | RBH | 0.056203 | 0.473162 | 0.716327 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0399200 | RBH | 0.0403235 | 0.0314905 | 0.051875 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0020830 | RBH | 3.362893 | 21.801743 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0020720 | RBH | 0.000000 | 94.624092 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0020950 | RBH | 3.188917 | 4.633620 | 4.555665 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0020670 | RBH | 0.047339 | 7.732351 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G020560 | RBH | 0.964138 | 10.937870 | 11.336363 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0020620 | RBH | 6.783033 | 53.257660 | 16.743662 |
