Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0534100 | OGI:07020720 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:20942978-20945787 | ||||||||
| Gene Symbol | RLCK233, OsRLCK233 | ||||||||||
| DNA seq | ATGCTTGCAGCTCTCCTAATCCTTCTCCTCTCCTCGCCGCCGTCGCCGGCGGCCGGCGACCGGTGGTTCTGCGGCAACGCCACGACGTACACGCCGAACAGCGCCTACACGTCGAACCGTGATTCCCTCGCCGCATCACTCATCGCCGGAGCCACGAAGCTGCACTCGGCTACCGGCGCCGCCGGCGCGGGCGCCGACAGGGTCTACGGCGCCGTGCTCTGCCGAGGAGACACCGCCGCCGCCGACTGCGGCGGGCGCCTCCGCGAGGCCTTCGCCGGCATCGTCAACGGCACCAGCGTGTGCGCGCTCCGCAGGGACGTGGCGCTCTACGACGAGCTGTACCACCTCCGCTTCTCCGACCATGACTTCCTCTCCGCCTTCAGCAACTCGCCGGAGTGGGTCGACGTCACCAACCTGAACACCGCGCCGGCCGCCGACGCCGAGCGGTTCGAGGAGGTCGTCGGCGAGCTCCTCGGCTCGCTCGCCGACGCGGCGGCGAGGCGACCGGAGAGGTACGCGGCGGGCGATGCGCCGTGGCCGTCCCGGGAGAGGGACCGGACTGTCCGGACGGTGTACGGGCTGGCGCAGTGCACGCGGGACATGCCGCCGGAGCGCTGCCGGAGTTGCCTCGACGGCGTCGTCGCCGAGAGGCGGCGGAAGATCGGCGGCGGCACGATGGGCGGCGCGATCCATGGCGTGAGGTGCTCGCTGCGGTACGAGACGGACACCCAGTTCTTTACCACTCCAGGCAAGTTAATTAGTATATAGCAATACTAATTGAGCAGTATTAAGTATTAACATCCTTCACCCAATCTGAACGAACATTATGAAAGTAACGGCTCCTTTGAAATGCATGATTTTTCAAAAGACAAAAATAAGAAAAAAAATACATGTTTGAAATGTCGTAGCACCTCAAATCCAATAGATTGAAATAAAGCAAGAGAGCTACTAGAATGACCGTTTGGATGAAGCCTATGAAAAGTGCATGAATGAAAACGATCCCCCCAGTCGTTCAAAAAAAAAAAGAAAAGAAAAAGAATCCTCATAGGAAAATTTTCCATAGGGTTGAATTTCTCCAAAATTCCTTCAATAATCCAGTCTTCCAAAGGAGCCCCAAGGTCATGACTCCATTTACTGTGTTATTCTAAAAATATAATTCCATTTGGCATTTTCCATATACCTTGAATTCTATTTACTGTTTTTGTCTTCAGAGTAGTTGGACCATGGATTGGCTAGATAAACCTCTAAAAAAACAATTTTGCTTTCAGGCTGCTGAATGCATACTAAATATAAAAAGGACTGCATGCTACTCTGCTTGCCAAATATGTATATTTTACATGTATATATTGACTGAAAGTTTAAGATGAATCCTTTCGGTATGGTACAAATTAAGATTCAATTTAGCTGATCAATTTGGCCAAAAAGAAAGAAACGAACACTTGAATCCAACCGTAAGGCACACTATCTTAGCAAAATTCAGGAGCTAAGTCTTTGATATTGTAGAACTGATTCATTCACTACATGTAAACCATTCTATGTTTCAAAATTCAGGGCAAAAGAAGGGACATGCAATCTTGATCATTGCTACTGTTTACTCTCTTTCCATCATCTGCACACGCCTGTTTTTCTGTTTCCTAAGCATAAGAAGAAAACAAAAAAGAGGTAAGCAAATGAATAACAGTACATGATACTGGCAGCTAAAATACTAGATCATTTCTACTTACTTCAGTTACATGCAAGAACTAATGAAGGATGTGCATCTAGTGAAAATAAACTTGATGGAGCAGACCACAGACATGGATGAAGTTATGCGGCTTTGGAAGATAGAAGATGCTGGTTCAGAGTTCTCCTTGTATGATTTTTCCCAGCTTGCTGATGCTACAGACAACTTCTCAGCCAATAACATATTAGGCGAGGGTGGCTTTGGCCCAGTTTACAAGGTACTTTCTTGTAACAGTATCATCTAATTCTGATGGCATCATATGTATGTAGGATTTCATTGATGAAATTTACAGGGGCTGTTTCCTGATGGACAAGAGTTAGCAATAAAAAAACTTGGTGCACAGTCAAGACAAGGTCTAGTGGAGTTCAAAAATGAGATCCAGCTTGTAGCAAAACTTCAGCACAAAAACCTTGTTAGGTTGCTCGGTTGCTGTGTTCATGAGGAACAGAAGATACTGATCTACGAATATCTGCCCAACAAAAGCTTGGATCACTTCATTTTTGGCATGTTTTACTCCCTAGCTATTGATAAAAATTGCATTTATTCTCGTGTGTAGTACAAGTATTAAACCTTGAGCCTGCATTATATTGCTTGTAGATCCTATCAGACGGACATCACTAAACTGGAAAACACGAAGAAAAATAGTTGAAGGAATAGCCCAGGGGCTTCTATACCTTCACAAGCATTCACGGCTAAGAATCATCCATAGGGACTTGAAAGCAAGCAACATTCTGTTGGACTCTGAGTTAAACCCTAAAATTTCTGATTTTGGGATGGCAAGGATATTCCCATCGGATGCCTCTCGAGCAAAAGCAAGCAGACTTGTGGGAACATTGTAAGAGCAAGAAACTAGAAATGCTAGTAGTTACTAAAGTTTCTACCTACACATTTGCTTTCTAACTCTACTGCATGCCATCTTGTCAGTGGCTACATGGCACCTGAATATGCATCTGAGGGCCTTATCTCAATCAAATCAGATGTTTTCAGTTTTGGTGTCCTGCTTCTTGAAATTATGAGTGGAACGAGGAGTGCAGGTTTTCAGCACTATGGAGAATTTCAAAATCTTCTTGAATATGTAAGCAATTGA
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| CDS seq | ATGCTTGCAGCTCTCCTAATCCTTCTCCTCTCCTCGCCGCCGTCGCCGGCGGCCGGCGACCGGTGGTTCTGCGGCAACGCCACGACGTACACGCCGAACAGCGCCTACACGTCGAACCGTGATTCCCTCGCCGCATCACTCATCGCCGGAGCCACGAAGCTGCACTCGGCTACCGGCGCCGCCGGCGCGGGCGCCGACAGGGTCTACGGCGCCGTGCTCTGCCGAGGAGACACCGCCGCCGCCGACTGCGGCGGGCGCCTCCGCGAGGCCTTCGCCGGCATCGTCAACGGCACCAGCGTGTGCGCGCTCCGCAGGGACGTGGCGCTCTACGACGAGCTGTACCACCTCCGCTTCTCCGACCATGACTTCCTCTCCGCCTTCAGCAACTCGCCGGAGTGGGTCGACGTCACCAACCTGAACACCGCGCCGGCCGCCGACGCCGAGCGGTTCGAGGAGGTCGTCGGCGAGCTCCTCGGCTCGCTCGCCGACGCGGCGGCGAGGCGACCGGAGAGGTACGCGGCGGGCGATGCGCCGTGGCCGTCCCGGGAGAGGGACCGGACTGTCCGGACGGTGTACGGGCTGGCGCAGTGCACGCGGGACATGCCGCCGGAGCGCTGCCGGAGTTGCCTCGACGGCGTCGTCGCCGAGAGGCGGCGGAAGATCGGCGGCGGCACGATGGGCGGCGCGATCCATGGCGTGAGGTGCTCGCTGCGGTACGAGACGGACACCCAGTTCTTTACCACTCCAGGCAATTACATGCAAGAACTAATGAAGGATGTGCATCTAGTGAAAATAAACTTGATGGAGCAGACCACAGACATGGATGAAGTTATGCGGCTTTGGAAGATAGAAGATGCTGGTTCAGAGTTCTCCTTGTATGATTTTTCCCAGCTTGCTGATGCTACAGACAACTTCTCAGCCAATAACATATTAGGCGAGGGTGGCTTTGGCCCAGTTTACAAGGATTTCATTGATGAAATTTACAGGGGCTGTTTCCTGATGGACAAGAATCCTATCAGACGGACATCACTAAACTGGAAAACACGAAGAAAAATAGTTGAAGGAATAGCCCAGGGGCTTCTATACCTTCACAAGCATTCACGGCTAAGAATCATCCATAGGGACTTGAAAGCAAGCAACATTCTGTTGGACTCTGAGTTAAACCCTAAAATTTCTGATTTTGGGATGGCAAGGATATTCCCATCGGATGCCTCTCGAGCAAAAGCAAGCAGACTTGTGGGAACATTTGGCTACATGGCACCTGAATATGCATCTGAGGGCCTTATCTCAATCAAATCAGATGTTTTCAGTTTTGGTGTCCTGCTTCTTGAAATTATGAGTGGAACGAGGAGTGCAGGTTTTCAGCACTATGGAGAATTTCAAAATCTTCTTGAATATGTAAGCAATTGA
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| Protein seq | MLAALLILLLSSPPSPAAGDRWFCGNATTYTPNSAYTSNRDSLAASLIAGATKLHSATGAAGAGADRVYGAVLCRGDTAAADCGGRLREAFAGIVNGTSVCALRRDVALYDELYHLRFSDHDFLSAFSNSPEWVDVTNLNTAPAADAERFEEVVGELLGSLADAAARRPERYAAGDAPWPSRERDRTVRTVYGLAQCTRDMPPERCRSCLDGVVAERRRKIGGGTMGGAIHGVRCSLRYETDTQFFTTPGNYMQELMKDVHLVKINLMEQTTDMDEVMRLWKIEDAGSEFSLYDFSQLADATDNFSANNILGEGGFGPVYKDFIDEIYRGCFLMDKNPIRRTSLNWKTRRKIVEGIAQGLLYLHKHSRLRIIHRDLKASNILLDSELNPKISDFGMARIFPSDASRAKASRLVGTFGYMAPEYASEGLISIKSDVFSFGVLLLEIMSGTRSAGFQHYGEFQNLLEYVSN |
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| Function | Cysteine-rich receptor-like protein kinase 15 [UniProtKB/Swiss-Prot:Q8W4G6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0534100 | OsNip_07t0534100-00 | Chr07 | 20942978 | 20945787 | + | RAP2018-11-26 | ||
| CDS seq | ATGCTTGCAGCTCTCCTAATCCTTCTCCTCTCCTCGCCGCCGTCGCCGGCGGCCGGCGACCGGTGGTTCTGCGGCAACGCCACGACGTACACGCCGAACAGCGCCTACACGTCGAACCGTGATTCCCTCGCCGCATCACTCATCGCCGGAGCCACGAAGCTGCACTCGGCTACCGGCGCCGCCGGCGCGGGCGCCGACAGGGTCTACGGCGCCGTGCTCTGCCGAGGAGACACCGCCGCCGCCGACTGCGGCGGGCGCCTCCGCGAGGCCTTCGCCGGCATCGTCAACGGCACCAGCGTGTGCGCGCTCCGCAGGGACGTGGCGCTCTACGACGAGCTGTACCACCTCCGCTTCTCCGACCATGACTTCCTCTCCGCCTTCAGCAACTCGCCGGAGTGGGTCGACGTCACCAACCTGAACACCGCGCCGGCCGCCGACGCCGAGCGGTTCGAGGAGGTCGTCGGCGAGCTCCTCGGCTCGCTCGCCGACGCGGCGGCGAGGCGACCGGAGAGGTACGCGGCGGGCGATGCGCCGTGGCCGTCCCGGGAGAGGGACCGGACTGTCCGGACGGTGTACGGGCTGGCGCAGTGCACGCGGGACATGCCGCCGGAGCGCTGCCGGAGTTGCCTCGACGGCGTCGTCGCCGAGAGGCGGCGGAAGATCGGCGGCGGCACGATGGGCGGCGCGATCCATGGCGTGAGGTGCTCGCTGCGGTACGAGACGGACACCCAGTTCTTTACCACTCCAGGCAATTACATGCAAGAACTAATGAAGGATGTGCATCTAGTGAAAATAAACTTGATGGAGCAGACCACAGACATGGATGAAGTTATGCGGCTTTGGAAGATAGAAGATGCTGGTTCAGAGTTCTCCTTGTATGATTTTTCCCAGCTTGCTGATGCTACAGACAACTTCTCAGCCAATAACATATTAGGCGAGGGTGGCTTTGGCCCAGTTTACAAGGATTTCATTGATGAAATTTACAGGGGCTGTTTCCTGATGGACAAGAATCCTATCAGACGGACATCACTAAACTGGAAAACACGAAGAAAAATAGTTGAAGGAATAGCCCAGGGGCTTCTATACCTTCACAAGCATTCACGGCTAAGAATCATCCATAGGGACTTGAAAGCAAGCAACATTCTGTTGGACTCTGAGTTAAACCCTAAAATTTCTGATTTTGGGATGGCAAGGATATTCCCATCGGATGCCTCTCGAGCAAAAGCAAGCAGACTTGTGGGAACATTTGGCTACATGGCACCTGAATATGCATCTGAGGGCCTTATCTCAATCAAATCAGATGTTTTCAGTTTTGGTGTCCTGCTTCTTGAAATTATGAGTGGAACGAGGAGTGCAGGTTTTCAGCACTATGGAGAATTTCAAAATCTTCTTGAATATGTAAGCAATTGA
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| Protein seq | MLAALLILLLSSPPSPAAGDRWFCGNATTYTPNSAYTSNRDSLAASLIAGATKLHSATGAAGAGADRVYGAVLCRGDTAAADCGGRLREAFAGIVNGTSVCALRRDVALYDELYHLRFSDHDFLSAFSNSPEWVDVTNLNTAPAADAERFEEVVGELLGSLADAAARRPERYAAGDAPWPSRERDRTVRTVYGLAQCTRDMPPERCRSCLDGVVAERRRKIGGGTMGGAIHGVRCSLRYETDTQFFTTPGNYMQELMKDVHLVKINLMEQTTDMDEVMRLWKIEDAGSEFSLYDFSQLADATDNFSANNILGEGGFGPVYKDFIDEIYRGCFLMDKNPIRRTSLNWKTRRKIVEGIAQGLLYLHKHSRLRIIHRDLKASNILLDSELNPKISDFGMARIFPSDASRAKASRLVGTFGYMAPEYASEGLISIKSDVFSFGVLLLEIMSGTRSAGFQHYGEFQNLLEYVSN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.151327 | 0.000000 | 0.299188 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0534700 | SBH | 0.693196 | 0.740099 | 0.261145 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g34980 | SBH | 0.082129 | 0.085179 | 0.062274 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0534100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0017860 | SBH | 0.142134 | 0.000000 | 1.056033 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0017740 | RBH | 0.102085 | 0.522861 | 1.282435 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0017730 | SBH | 0.491561 | 0.368260 | 1.156908 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0017650 | SBH | 0.106772 | 0.028095 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0017760 | SBH | 0.412422 | 3.766631 | 2.356876 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0341900 | SBH | 1.787428 | 10.478801 | 2.813982 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0018260 | SBH | 0.217382 | 0.298519 | 0.167195 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0356400 | SBH | 2.6708465 | 8.169351 | 4.3288805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0017520 | SBH | 0.092536 | 0.079611 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0017680 | SBH | 0.099510 | 2.096761 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0017620 | SBH | 0.283242 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0017880 | RBH | 0.418212 | 0.293664 | 1.245275 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0017660 | SBH | 0.048012 | 0.490348 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G017960 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0017510 | SBH | 0.587724 | 0.454863 | 0.385640 |
