Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0730200 | OGI:06086910 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:31118702-31121868 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAAGTAGCGCAGGCAAGGCGAGGGGCAAAGGAGGAGGAGGGAGGGATGGTGAAGAAGAAGCCGGCCGGCGATGCGGAGGCCGACGAGCGGCGCCGCCTCCGCTCCCTCGCCTTCTCTAATGGCTTACTCCAGCGCGGGGAGCCGGCGGCGCCGCGCTCGGCTCTCGCGCCCTCCACTGCCGTGTCGCGGCTGCAGGGCCGCGACATCGTGCGCCGCGGCGGGCAGCGCAAGAGCCGCTTCCTCTTCTCCTTCCCCGGCCTCCTCGCGCCCGCGGCTGCTGCCTCGGGCGGCCGCGTCGGCGAGCTCGCTGATCTTGGCACCAAAAATCCTCTGCTCTACCTCGACTTCCCACAGGTATCCTATATCTATCTATCTATTCCGTCAGGTCAGGTAGGTGAGATGATATGATATGCATGTTTTATTGTGGGTAATGAATGTTTCAGGGGAGGATGAAGCTGTTGGGGACGCATGTGTACCCCAAGAACAAGTATCTGACACTGCAGATGACGTCTTCGAGAGCCTGGTTACTTCAAACTTCACATCTTTACTCTGCCTGCCCTGCCCTCTATCTATCTTGGAACTGGAACTTGCATCCGCACAATTGCTGCTATGCTCGTCCCTTTTCTCTGGGCTGTTATTGCTAACTACTTACTTATGCTGCTGTTTTATTTGGCAGATTGTTTTTTCTGAAGCCTGGTGGATTGGAACAAAAGAAGAAGAAAACCCACAAGAACTGAAACTGGATTTTCCAAAAGAGTTCCAGAATGTGCGTGTGCTTTCCATCCATATATGTTACTTCCTTTTTCTTAATTTTCGCTTCTTCTACGACGCTACTGTGCCTCTCATCTCATGTGCTTCTTCATTTCAGACTGGTAGGATGAGGCGGTTGCAGATTCTGATTTTAAAGGTGGAGCAGGTGCTTCCTGTGATGAAGCTGTTTCCATCAATAAACCGCCAAAGGAAACCACCACAGGATCCCTTTCCCCTAAGATTGAATCTGACATTGATTCTTCCGAGGATTCAGACCTTAAGGACGAGGATAACACACAAAGCACTAGTCAAGCACCTTCAGTTAGGCAGTCTGCTAGAACTGCTGGGAAAGCCTTGAAGTAAGTCAGTTTCACCCTTTTCTGTTGCTCTCTCGGATAAACAGAAAAGCACACGGGCTCTAGTTGTTGCTTAGCAGCTGAAAGATTGCCTACTTCCTGCATTTATTTGGCTTAACGGCTAATGTTTCTAAAAACAAATATGTTCATCTCCCACCCACCCGAAAAAAGGCAAAGAATAAAAAGGTATACTTGATAGATCCCTCGCTCTTTATGCAGGTATACTGAGATATCATCTGGAGACGATTCATCTGATAATGACGATGAGATTGATGTCCCTGAGGACATGGATGAGAAGGTAGTGATACCGAATTTAATTTTATAAGATTCAGATATATGAATCAATGTCAATCAAGCTTTTATCTTTTGTAAATAATTTTATTGTGTTTATTTGCTTTCTTCGTTTGAAGCAGATGAAGAGTCCAGCAGTTAAGAATGAATCCCAAAGTGAAGACATTAAACCTGCAGATTGGTCTGCGCAGCCTATCTCAGCTAAGAAGGAGCCACTCGTTCAGGCCACTCTGTCTAGCATGTTTAAAAAAGCAGAAGAAAAAAAAGGTGGAAATGCATACCTGTTATTATAATAGTTTCTCTCCTTATGATAGCGGACAGTTATACCCTTAACTTTGATATAATGTTTGCTTGATGCATTAATTGAACCAACTTCACAACATACCTCTTTTTCCGTATATGTGTTTTGAACATTATCTGTTTTCATGCCTGGTACAAATAAATTAGTTCAGCATCTGACAAAAGGATTTCTATTTCAGAGATGTACAAGAAGCCCGAAAGGATCTCCAGCAGCAAAAGGTTCTTCATATTTACGCAATTCTAGGCTTCTTGTGTTTTCCTTTATTACACAAAGAAAATTCCTTTTGATTGGATCTGTGATTGGCATTGTTCTACAGGACCTGCTGCTAAGAAGCAGCGAGCAAGTCCAGAGGAAAAACATCCAACAGGGAAGAAGAGTGGTAAGTGCAGTAGCAAGTCTGTTGTTAAGAAGCATCTAATAGACCTTGGTGCGATTACATTTGTTTTAAGCCTCTGAAGGCCTTCCTCAATGGAGAAGACTTGTTCTAAAATAATCCAAAGGTTTTGGGAGGCTTACTTGAGAAGCTTTCAGCTTTTGTCTATGTAAGGGGCATTTAAAATGTTAATCCATTTCATGAAGCTTTAGGACCATCTCAAGCCTGTCGAATCGGAATAAATGATGGAATTAAAATCTATTGCGGCGGCTCTATACTAAATATGCTATTTGAATTTTACAAGACTTGATATTGCTGGGTAAAAGCTGTGATGCATGGGGGAAAAACAAATGCATTTTAGTGGCTCTTAGCACAACATGCAACGATCTATCAGCTTTTCTTTAACTGAGTACATCAGTACATGTTAGTATTCTTCATATGAAGCTGACTATTGTATTTACATGGATGTAGCTGGCAGAAGTCAGAAAAGGAGAAAAACACAGGTACTTTACTTAGCAACAATGATCAGGGATTTTAATTTGAATGTCCCTTCCCATTGTTTACTTTGCTGATTGCCTTTGCCCTCTCATTTTTCTGTCACAGGTAGAAGATGACAAAATTGAAGTGCTCTCAAGTTCCTCCCAGGTGATTGTTTTTCTGATAGCTAGAGTGTAGTAGATTGGTACATTATGGCCATTGTTCTTATTCTTCTTCTTGTTGTTATGAGGTTGTGCCGTCCTCCCAGCTAATCCTAACAGCATATGACAGGATAACAACGTGGACGATGATAGCGATGAGGACTGGGCTGAGTGATGTGCAGCTGAAGTTGAAAGGAATGTAGCACTAGGTGATGAAGAGTGAAGGATGCAAGATTGTGGGCAATTCTTTTCTTTGGGGGCGATATCACAATTGATGTGTTTGAGGAGCTTAGGTTCTGGCCTGACCATTGATGAGATATATCATCATAGTCTTTTCATCGCACTGGTGAAATTGAAAACCGAGAAGTCGTGTGATCTGTTAGCACTAGATTTATTATTTATTTGACTTGTTGTAATGTAACATAAACAAGAGCTGATAAATCATTGTTAGGGTCTGC
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| CDS seq | ATGGTGAAGAAGAAGCCGGCCGGCGATGCGGAGGCCGACGAGCGGCGCCGCCTCCGCTCCCTCGCCTTCTCTAATGGCTTACTCCAGCGCGGGGAGCCGGCGGCGCCGCGCTCGGCTCTCGCGCCCTCCACTGCCGTGTCGCGGCTGCAGGGCCGCGACATCGTGCGCCGCGGCGGGCAGCGCAAGAGCCGCTTCCTCTTCTCCTTCCCCGGCCTCCTCGCGCCCGCGGCTGCTGCCTCGGGCGGCCGCGTCGGCGAGCTCGCTGATCTTGGCACCAAAAATCCTCTGCTCTACCTCGACTTCCCACAGGGGAGGATGAAGCTGTTGGGGACGCATGTGTACCCCAAGAACAAGTATCTGACACTGCAGATGACGTCTTCGAGAGCCTG |
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| Protein seq | MVKKKPAGDAEADERRRLRSLAFSNGLLQRGEPAAPRSALAPSTAVSRLQGRDIVRRGGQRKSRFLFSFPGLLAPAAAASGGRVGELADLGTKNPLLYLDFPQGRMKLLGTHVYPKNKYLTLQMTSSRA |
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| Function | DNA-binding protein RHL1 [UniProtKB/Swiss-Prot:O81242] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0730200 | OsNip_06t0730200-01 | Chr06 | 31118702 | 31120365 | + | RAP2018-11-26 | ||
| CDS seq | ATGGTGAAGAAGAAGCCGGCCGGCGATGCGGAGGCCGACGAGCGGCGCCGCCTCCGCTCCCTCGCCTTCTCTAATGGCTTACTCCAGCGCGGGGAGCCGGCGGCGCCGCGCTCGGCTCTCGCGCCCTCCACTGCCGTGTCGCGGCTGCAGGGCCGCGACATCGTGCGCCGCGGCGGGCAGCGCAAGAGCCGCTTCCTCTTCTCCTTCCCCGGCCTCCTCGCGCCCGCGGCTGCTGCCTCGGGCGGCCGCGTCGGCGAGCTCGCTGATCTTGGCACCAAAAATCCTCTGCTCTACCTCGACTTCCCACAGGGGAGGATGAAGCTGTTGGGGACGCATGTGTACCCCAAGAACAAGTATCTGACACTGCAGATGACGTCTTCGAGAGCCTG
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| Protein seq | MVKKKPAGDAEADERRRLRSLAFSNGLLQRGEPAAPRSALAPSTAVSRLQGRDIVRRGGQRKSRFLFSFPGLLAPAAAASGGRVGELADLGTKNPLLYLDFPQGRMKLLGTHVYPKNKYLTLQMTSSRA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0730200 | OsNip_06t0730200-02 | Chr06 | 31118735 | 31121868 | + | IsoSeq | ||
| CDS seq | ATGCGGAGGCCGACGAGCGGCGCCGCCTCCGCTCCCTCGCCTTCTCTAATGGCTTACTCCAGCGCGGGGAGCCGGCGGCGCCGCGCTCGGCTCTCGCGCCCTCCACTGCCGTGTCGCGGCTGCAGGGCCGCGACATCGTGCGCCGCGGCGGGCAGCGCAAGAGCCGCTTCCTCTTCTCCTTCCCCGGCCTCCTCGCGCCCGCGGCTGCTGCCTCGGGCGGCCGCGTCGGCGAGCTCGCTGATCTTGGCACCAAAAATCCTCTGCTCTACCTCGACTTCCCACAGGGGA
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| Protein seq | MRRPTSGAASAPSPSLMAYSSAGSRRRRARLSRPPLPCRGCRAATSCAAAGSARAASSSPSPASSRPRLLPRAAASASSLILAPKILCSTSTSHRG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr06 | 31119224 | 31119379 | + | OsNip_06t0730200-02 | OsNip_06t0730200-02,OsNip_06t0730200-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.007210 | 0.900260 | 0.571597 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0172200 | RBH | 3.917219 | 2.023663 | 4.079774 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g51380 | RBH | 0.527990 | 0.414774 | 0.184682 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0730200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0029950 | RBH | 0.0 | 0.0 | 2.759012 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0029740 | RBH | 0.030002 | 0.000000 | 0.403056 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0030110 | RBH | 0.551079 | 0.0 | 3.260079 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0029450 | RBH | 0.0 | 0.029201 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0004470 | SBH | 11.469223 | 13.414010 | 14.582424 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0064000 | SBH | 9.557188 | 16.9421395 | 14.838715 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0004980 | SBH | 0.373023 | 0.312679 | 0.954542 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0067500 | SBH | 9.2168265 | 14.645027 | 28.9466445 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0004460 | SBH | 0.542096 | 0.211787 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0004450 | SBH | 1.111748 | 3.323952 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0004490 | SBH | 8.209051 | 14.593354 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0004570 | SBH | 1.051345 | 1.131428 | 1.561826 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0004450 | SBH | 0.606978 | 2.288301 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G029640 | RBH | 0.0 | 0.590981 | 0.376568 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0029790 | RBH | 0.324844 | 2.702015 | 0.204774 |
