Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_06g0030110 | OGI:06086910 | 15/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr06:30784317-30787577 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaagtagcgcaggcaaggcgaggggcaaaggaggaggagggagggatggtgaagaagaagccggccggcgatgcggaggccgacgagcggcgccgcctccgctccctcgccttctctaatggcttactccagcgcggggagccggcggcgccgcgctcggctctcgcgccctccactgccgtgtcgcggctgcagggccgcgacatcgtgcgccgcggcgggcagcgcaagagccgcttcctcttctccttccccggcctcctcgcgcccgcggctgctgcctcgggcggccgcgtcggcgagctcgctgatcttggcaccaaaaatcctctgctctacctcgacttcccacaggtatcctatatctatctatctattccgtcaggtcaggtaggtgagatgatatgatatgcatgttttattgtgggtaatgaatgtttcaggggaggatgaagctgttggggacgcatgtgtaccccaagaacaagtatctgacactgcagatgacgtcttcgagagcctggttacttcaaacttcacatctttactctgcctgccctgccctctatctatcttggaactggaacttgcatccgcacaattgctgctatgctcgtcccttttctctgggctgttattgctaactacttacttaTGCtgctgttttatttggcagattgttttttctgaagcctggtggattggaacaaaagaagaagAaaacccacaagaactgaaactggattttccaaaagagttccagaatgtgcgtgtgctttccatccatatatgttacttcctttttcttaattttcgcttcttctacgacgctactgtgcctctcatctcatgtgcttcttcatttcagactggtaggatgaggcggttgcagattctgattttaaaggtggagcaggtgcttcctgtgatgaagctgtttccatcaataaaccgccaaaggaaaccaccacaggatccctttcccctaagattgaatctgacattgattcttccgaggattcagaccttaaggacgaggataacacacaaagcactagtcaagcaccttcagttaggcagtctgctagaactgctgggaaagccttgaagtaagtcagtttcaccctttTCtGttgctctctcggataaacagaaaagcacacgggctctagttgttgcttagcagctgaaagattgcctacttcctgcatttatttggcttaacggctaatgtttctaaaaacaaatatgttcatctcccacccacccgaaaaaaggcaaagaataaaaaggtatacttgatagatccctcgctctttatgcaggtatactgagatatcatctggagacgattcatctgataatgacgatgagattgatgtccctgaggacatggatgagaaggtagtgataccgaatttaattttataagattcagatatatgaatcaatgtcaatcaagcttttatcttttgtaaataattttattgtgtttatttgctttcttcgtttgaagcagatgaagagtccagcagttaagaatgaatcccaaagtgaagacattaaacctgcagattggtCTgcgcagcctatctcagctaagaaggagccactcgttcaggccactctgtctagcatgtttaaaaaagcagaagaaaaaaaaggtggaaatgcatacctgttattataatagtttctctccttatgatagcggacagttatacccttaactttgatataatgtttgcttgatgcattaattgaaccaacttcacaacatacctctttttccgtatatgtgttttgaacattatctgttttcatgcctggtacaaataaattagttcagcatctgacaaaaggatttctatttcagagatgtacaagaagcccgaaaggatctccagcagcaaaaggttcttcatatttacgcaattctaggcttcttgtgttttcctttattacacaaagaaaattccttttgattggatctgtgattggcattgttctacaggacctgctgctaagaagcagcgagcaagtccagaggaaaaacatccaacagggaagaagagtggtaagtgcagtagcaagtctgttgttaagaagcatctaatagaccttggtgcgattacatttgttttaagcctctgaaggccttcctcaatggagaagacttgttctaaaataatccaaaggttttgggaggcttacttgagaagctttcagcttttgtctatgtaaggggcatttaaaatgttaatccatttcatgaagctttaggaccatctcaagcctgtcgaatcggaataaatgatggaattaaaatctattgcggcggctctatactaaatatgctatttgaattttacaagacttgatattgctgggtaaaagctgtgatgcatgggggaaaaacaaatgcattttagtggctcttagcacaacatgcaacgatctatcagcttttctttaactgagtacatcagtacatgttagtattcttcatatgaagctgactattgtatttacatggatgtagctggcagaagtcagaaaaggagaaaaacacaggtactttacttagcaacaatgatcagggattttaatttgaatgtcccttcccattgtttactttgctgattgcctttgccctctcatttttctgtcacaggtagaagatgacaaaattgaagtgctctcaagttcctcccaggtgattgtttttctgatagctagagtgtagtagattggtacattatggccattgttcttattcttcttcttgttgttatgaggttgtgccgtcctcccagctaatcctaacagcatatgacaggataacaacgtggacgatgatagcgatgaggactgggctgagtgatgtgcagctgaagttgaaaggaatgtagcactaggtgatgaagagtgaaggatgcaagattgtgggcaattcttttctttgggggcgatatcacaattgatgtgtttgaggagcttaggttctggcctgaccattgatgagatatatcatcatagtcttttcatcgcactggtgaaattgaaaaccgagaagtcgtgtgatctgttagcactagatttattatttatttgacttgttgtaatgtaacataaacaagagctgataaatcattgttagggtctgcaatgcaaattagtactgcaattacagatataaactataccattgatgaagaaaatgattgttgtgtatttatttatggtattgataaattaaac
More
|
||||||||||
| CDS seq | atggtgaagaagaagccggccggcgatgcggaggccgacgagcggcgccgcctccgctccctcgccttctctaatggcttactccagcgcggggagccggcggcgccgcgctcggctctcgcgccctccactgccgtgtcgcggctgcagggccgcgacatcgtgcgccgcggcgggcagcgcaagagccgcttcctcttctccttccccggcctcctcgcgcccgcggctgctgcctcgggcggccgcgtcggcgagctcgctgatcttggcaccaaaaatcctctgctctacctcgacttcccacaggatgaagctgttggggacgcatgtgtaccccaagaacaagtatctgacactgcagatgacgtcttcgagagcctgattgttttttctgaagcctggtggattggaacaaaagaagaagAaaacccacaagaactgaaactggattttccaaaagagttccagaatgatgaggcggttgcagattctgattttaaaggtggagcaggtgcttcctgtgatgaagctgtttccatcaataaaccgccaaaggaaaccaccacaggatccctttcccctaagattgaatctgacattgattcttccgaggattcagaccttaaggacgaggataacacacaaagcactagtcaagcaccttcagttaggcagtctgctagaactgctgggaaagccttgaagtatactgagatatcatctggagacgattcatctgataatgacgatgagattgatgtccctgaggacatggatgagaagatgaagagtccagcagttaagaatgaatcccaaagtgaagacattaaacctgcagattggtCTgcgcagcctatctcagctaagaaggagccactcgttcaggccactctgtctagcatagatgtacaagaagcccgaaaggatctccagcagcaaaaggacctgctgctaagaagcagcgagcaagtccagaggaaaaacatccaacagggaagaagagtggtagaagatgacaaaattgaagtgctctcaagttcctcccaggataacaacgtggacgatgatagcgatgaggactgggctgagtga
More
|
||||||||||
| Protein seq | MVKKKPAGDAEADERRRLRSLAFSNGLLQRGEPAAPRSALAPSTAVSRLQGRDIVRRGGQRKSRFLFSFPGLLAPAAAASGGRVGELADLGTKNPLLYLDFPQDEAVGDACVPQEQVSDTADDVFESLIVFSEAWWIGTKEEENPQELKLDFPKEFQNDEAVADSDFKGGAGASCDEAVSINKPPKETTTGSLSPKIESDIDSSEDSDLKDEDNTQSTSQAPSVRQSARTAGKALKYTEISSGDDSSDNDDEIDVPEDMDEKMKSPAVKNESQSEDIKPADWSAQPISAKKEPLVQATLSSIDVQEARKDLQQQKDLLLRSSEQVQRKNIQQGRRVVEDDKIEVLSSSSQDNNVDDDSDEDWAE |
||||||||||
| Function | DNA-binding protein RHL1 [UniProtKB/Swiss-Prot:O81242] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_06g0030110 | OsCMeo_06g0030110.01 | Chr06 | 30784317 | 30787577 | + | NAM | ||
| CDS seq | atggtgaagaagaagccggccggcgatgcggaggccgacgagcggcgccgcctccgctccctcgccttctctaatggcttactccagcgcggggagccggcggcgccgcgctcggctctcgcgccctccactgccgtgtcgcggctgcagggccgcgacatcgtgcgccgcggcgggcagcgcaagagccgcttcctcttctccttccccggcctcctcgcgcccgcggctgctgcctcgggcggccgcgtcggcgagctcgctgatcttggcaccaaaaatcctctgctctacctcgacttcccacaggatgaagctgttggggacgcatgtgtaccccaagaacaagtatctgacactgcagatgacgtcttcgagagcctgattgttttttctgaagcctggtggattggaacaaaagaagaagAaaacccacaagaactgaaactggattttccaaaagagttccagaatgatgaggcggttgcagattctgattttaaaggtggagcaggtgcttcctgtgatgaagctgtttccatcaataaaccgccaaaggaaaccaccacaggatccctttcccctaagattgaatctgacattgattcttccgaggattcagaccttaaggacgaggataacacacaaagcactagtcaagcaccttcagttaggcagtctgctagaactgctgggaaagccttgaagtatactgagatatcatctggagacgattcatctgataatgacgatgagattgatgtccctgaggacatggatgagaagatgaagagtccagcagttaagaatgaatcccaaagtgaagacattaaacctgcagattggtCTgcgcagcctatctcagctaagaaggagccactcgttcaggccactctgtctagcatagatgtacaagaagcccgaaaggatctccagcagcaaaaggacctgctgctaagaagcagcgagcaagtccagaggaaaaacatccaacagggaagaagagtggtagaagatgacaaaattgaagtgctctcaagttcctcccaggataacaacgtggacgatgatagcgatgaggactgggctgagtga
More
|
|||||||
| Protein seq | MVKKKPAGDAEADERRRLRSLAFSNGLLQRGEPAAPRSALAPSTAVSRLQGRDIVRRGGQRKSRFLFSFPGLLAPAAAASGGRVGELADLGTKNPLLYLDFPQDEAVGDACVPQEQVSDTADDVFESLIVFSEAWWIGTKEEENPQELKLDFPKEFQNDEAVADSDFKGGAGASCDEAVSINKPPKETTTGSLSPKIESDIDSSEDSDLKDEDNTQSTSQAPSVRQSARTAGKALKYTEISSGDDSSDNDDEIDVPEDMDEKMKSPAVKNESQSEDIKPADWSAQPISAKKEPLVQATLSSIDVQEARKDLQQQKDLLLRSSEQVQRKNIQQGRRVVEDDKIEVLSSSSQDNNVDDDSDEDWAE
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_06g0030110 | OsCMeo_06g0030110.02 | Chr06 | 30784327 | 30787530 | + | IsoSeq | ||
| CDS seq | atgcggaggccgacgagcggcgccgcctccgctccctcgccttctctaatggcttactccagcgcggggagccggcggcgccgcgctcggctctcgcgccctccactgccgtgtcgcggctgcagggccgcgacatcgtgcgccgcggcgggcagcgcaagagccgcttcctcttctccttccccggcctcctcgcgcccgcggctgctgcctcgggcggccgcgtcggcgagctcgctgatcttggcaccaaaaatcctctgctctacctcgacttcccacagggga
More
|
|||||||
| Protein seq | MRRPTSGAASAPSPSLMAYSSAGSRRRRARLSRPPLPCRGCRAATSCAAAGSARAASSSPSPASSRPRLLPRAAASASSLILAPKILCSTSTSHRG |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr06 | 30784670 | 30784765 | + | OsCMeo_06g0030110.02 | OsCMeo_06g0030110.02,OsCMeo_06g0030110.01 | All |
| A3 | Chr06 | 30785082 | 30785193 | + | OsCMeo_06g0030110.02 | OsCMeo_06g0030110.02,OsCMeo_06g0030110.01 | All |
| SE | Chr06 | 30786393 | 30786991 | + | OsCMeo_06g0030110.02 | OsCMeo_06g0030110.02,OsCMeo_06g0030110.01 | All |
| A5 | Chr06 | 30785954 | 30786193 | + | OsCMeo_06g0030110.02 | OsCMeo_06g0030110.02,OsCMeo_06g0030110.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.551079 | 0.0 | 3.260079 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0730200 | RBH | 1.007210 | 0.900260 | 0.571597 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g51380 | RBH | 0.527990 | 0.414774 | 0.184682 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0730200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0029950 | RBH | 0.0 | 0.0 | 2.759012 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0029740 | RBH | 0.030002 | 0.000000 | 0.403056 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0029450 | RBH | 0.0 | 0.029201 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0029950 | RBH | 0.000000 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0487700 | RBH | 0.457443 | 0.113854 | 2.4780635 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0029340 | RBH | 0.047640 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0470400 | RBH | 0.8341905 | 0.010518 | 13.735127 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0029880 | RBH | 0.036898 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0029670 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0030230 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0029750 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G029640 | RBH | 0.0 | 0.590981 | 0.376568 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0029790 | RBH | 0.324844 | 2.702015 | 0.204774 |
