Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0703900 | OGI:06083330 | 2/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:29723508-29727074 | ||||||||
| Gene Symbol | PHR4, OsPHR4, Os-PHR4 | ||||||||||
| DNA seq | AGTCACTGGCCACCAATGATTTGCAGTAGTAACAGATATAGGTCTTAGGCCTCCCTGAGAGGCTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTTGGTGTTGGATAGGAGAAGAGAGTGGAGACAGTGGGGGTGAGAGGATTGGAAGCATCCAGATTCTGAATCTCCTGCAAGCCTACTTCCTGTTATCTTCTTTGGGCTTTCAGGTGAGGCTGAGATTTCAAAGATCCATCCTTTTATCTGCACTGCTGCTGTTCTCTCTGTTCTTTGGATTTCTTGGCATCGTTCTTGCGAGATTCAACTGCTTTCATTCATAATTTCTGCTGGTCTTACTAATTTGTCAGGGATTCAGACCTCATTTCTTGCTTTAATCCTCTCCCATTTCTGATTCTGTTCACTCTATCTCATTTCATATGCTTTCATGGGAATTTCTTCGGTTGTTGTACTAGATATGAGAGATATCCATGTGTGATTCACTTGAACTGTTCCAAGAATTTCATGCTGATTTTTAGTTGTTTTTTTTCTTCTGCCTCTGAATATCTGATGCTGTGAATCTGGGCTTCAGAGTTTGTATATGCTGTCCATGCTTCTCTCGGACAGACAGGACGGCATATACTCAAGCTGTACACGGGAAATTTCTCCAAAAAAGAGTGCCGAATGTGAGAATCTCGTGTGTCCTTTTTTTTTCTTCTTTTCTTTTTTGCTTTTTGCGAAACTCCAAAAACGTTCCTTTGTGATTTTTTATGTATTGAAAAGAAATTTCTGTAACTCAGATAGACAGTTGGAAAATTACTGTACTGTAGTCAACAGACAAGTAATGTTATCTGCAACTTTTACATTTTTTTTTGAGAGGAAAGCTTTTTTTTTTTGTGATTTTTCGTGTTCCTTTTACTAGTGAGCAAATATGTGGAATCTTATCCGTGATTTTTCTAGGGAACTGATTTTTCTGAGTATTTATGTTAATGTAATTACTGCACTACCAGAACTTAATAGAAATGATTAATAACTCAGATCTAAATATTTCGGCGTAATACATAACATACTCAGGGTCTCAGACACTAGAACCTCCTCTTGTGTAAATTGCTAGTTATCTACACAATTTTTTTTATTATAAGCAAGCTTCTTATGAACGCATATATCTGAGAAATATTTAGATTACGAATATGTTTCGCTGACTATTAAAATTTATCTCACTGTACTCTTGCAGCAAGCATCCATTGTGATGCACTGGCCAGTGGATGATAAAGCCATCAATCAACTGAACCAGCATGAGCTCCCAGAGTGTTGTTGCAGTGAAGCAGATTACTGCTCCGGACAAAATAGTGGAAACCTGTCCATCCACAAAACATTCTGCACATAAGCTGTTCGATGTTAAACCGGATTTTCAAGGGTTGATAGATGACAATTTGTCATCCTCCAGTCAGTCCTCAAGCATCAAGATTGAGCTGATCAGATCATCAAGCTTGCCAAATATACTGCCGTTTCAGAAAAGAAGCTCTGAACCTGAACCTGAAAGTCCACTGTCTCATGTTTCACATCCCAATGTTTCAGAGCCAGTTTACTCAAATTCTTCAACCTTCTGCACAAGTTTGTTTTCGTCGTCGTCGATGGAGACGGAGCCGTGCCGGCAATTGGGCACTCTACCATTCCTGCCTCACCCTCCTAAGTGTGAGCAGCAGGTTTCAGCAGGGCACTCATCAAGCTCCTCCCTGCTAGTACCTGGTGGTGATGGTGATATTGGCAATGCTCATGATGAACCTGAACAGTCAGATGATCTGAAGGATTTCCTCAATCTCTCTGGAGGAGATGCTTCTGATGGCAGCTTCCATGGAGAAAACAATGCCATGGCTTTTGCTGAGCAGATGGAGTTCCAGTTCTTGTCTGAGCAGCTAGGGATTGCCATCACTGACAATGAGGAGAGCCCTCGGTTAGATGTGAGTTTATTCATTGCCTTTACTGAAACATTTTCTTCACTGTAAATTGAGTAGTCCATTGATCTTCTTACACAACAATTCTTTTATTTTCAGGACATATACGGCACGCCGCCGCAACTTTCATCACTTCCAGTATCATCTTGCTCCAACCAGAGTGTACAGAAAGCAGGATCTCCTGTGAAAGTTCAGCTTAGCTCGCCTCGGTCATCTTCGGGATCCGCGACAACTAACAAGGCGAGGTTGAGGTGGACACTGGAGCTCCATGAGCGTTTTGTAGAGGCTGTGAACAAGCTAGATGGACCTGAAAGTAGGGTGGCCATAAATGCTTTGCAATTTTCAGTACCTTAAAAGGAATAATTTTGAAGTTGTCTAAATGGTTTATTTCATTATCTCATACAGAGGCAACTCCTAAAGGTGTGCTGAAACTTATGAAAGTAGAAGGCCTGACTATCTACCATGTAAAGAGTCATTTGCAGGTATCAGTGTATCACTTTATATTCATTTACTACCATTTTTACTGGAAAATCAAGCACCCTTCTATGTTTTCATATTTTGCTTACAGTTTCTCTGTCCTTATTGTGCAGAAGTATCGCCTCGCAAAATATCTCCCAGAGACTAAGGAAGGTAAATTGAGAAAATAGTTGATATCTTTTTTAGATTGTTTTGTCATTCTGAATACTGAATTACTGATGCATGCTATATGCAGACAAGAAGGCATCCTCAGAGGATAAGAAATCTCAGTCAGGTAGCAGTGGAAATGATTCAGTCAAAAAGAAGTAAGCCTTCTAATTGCTCACACCAGAACTCAGAAACATAAACACTGTGATCTTAGAACTTACAACTACTAAATTTCCATTGTCCCATTTCTTAGGAACTTACAAGTGGCAGAAGCTCTACGAATGCAAATGGAGGTTCAGAAACAGCTTCATGAACAGTTAGAGGTGCGTATCAGAAACTCTAGAATGCAGGGTTTGCAATCCGTCTGATGTTGTAGTATCATTCTTCATCTGCACTTGTGATCATTGTTCATCTGCCATCACTATAGTGAATTTGGTCAAAATCAAATAATATGCTGCAAGTGTTCAGTGACCAAATTTTCAGTTAAATCAGTACACATATTCAGGAAAAGCATGCGGCTCACAAATAATCCGAACTAGATATCCCCAATCCATACAATTTATACCTTTTTCAATCACCAGGTGCAAAGGCAACTGCAGCTGCGAATCGAAGAACACGCAAGATACCTGCAGAGAATACTGGAAGAGCAGCACAAGGTCAGCATCAGCAGCAACTCCCTCTCACTGAAACCCCCAGCCGAATCGCAACCGGAATCGCCAAAACCAACATCAGAAAAGAAGGAGGCCGAATCCGAAGCAGGCGCCGCCACTTCAGCTCAGCCATCATCCGAGGATAAATCACCAGACGCAGAATGCAAGTCGTCGCCGCCGGTGGGTAGCAAGAGAGCTAGGGTTCATGTCGGCGATGAGCACCAGTGTTCATAGCTTGTGTAGAGAGGAAGAAGGCAAGGATTTCTCAGCTGCATGCAAATGCATCTCTCTTCTTGAGAATTTTAGCCACTGTATATAAATTTGGACTTTTGGGGAATGAGAATCTGAATTTGGAAGC
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| CDS seq | ATGAGCTCCCAGAGTGTTGTTGCAGTGAAGCAGATTACTGCTCCGGACAAAATAGTGGAAACCTGTCCATCCACAAAACATTCTGCACATAAGCTGTTCGATGTTAAACCGGATTTTCAAGGGTTGATAGATGACAATTTGTCATCCTCCAGTCAGTCCTCAAGCATCAAGATTGAGCTGATCAGATCATCAAGCTTGCCAAATATACTGCCGTTTCAGAAAAGAAGCTCTGAACCTGAACCTGAAAGTCCACTGTCTCATGTTTCACATCCCAATGTTTCAGAGCCAGTTTACTCAAATTCTTCAACCTTCTGCACAAGTTTGTTTTCGTCGTCGTCGATGGAGACGGAGCCGTGCCGGCAATTGGGCACTCTACCATTCCTGCCTCACCCTCCTAAGTGTGAGCAGCAGGTTTCAGCAGGGCACTCATCAAGCTCCTCCCTGCTAGTACCTGGTGGTGATGGTGATATTGGCAATGCTCATGATGAACCTGAACAGTCAGATGATCTGAAGGATTTCCTCAATCTCTCTGGAGGAGATGCTTCTGATGGCAGCTTCCATGGAGAAAACAATGCCATGGCTTTTGCTGAGCAGATGGAGTTCCAGTTCTTGTCTGAGCAGCTAGGGATTGCCATCACTGACAATGAGGAGAGCCCTCGGTTAGATGACATATACGGCACGCCGCCGCAACTTTCATCACTTCCAGTATCATCTTGCTCCAACCAGAGTGTACAGAAAGCAGGATCTCCTGTGAAAGTTCAGCTTAGCTCGCCTCGGTCATCTTCGGGATCCGCGACAACTAACAAGGCGAGGTTGAGGTGGACACTGGAGCTCCATGAGCGTTTTGTAGAGGCTGTGAACAAGCTAGATGGACCTGAAAAGGCAACTCCTAAAGGTGTGCTGAAACTTATGAAAGTAGAAGGCCTGACTATCTACCATGTAAAGAGTCATTTGCAGAAGTATCGCCTCGCAAAATATCTCCCAGAGACTAAGGAAGACAAGAAGGCATCCTCAGAGGATAAGAAATCTCAGTCAGGTAGCAGTGGAAATGATTCAGTCAAAAAGAAGAACTTACAAGTGGCAGAAGCTCTACGAATGCAAATGGAGGTTCAGAAACAGCTTCATGAACAGTTAGAGGTGCAAAGGCAACTGCAGCTGCGAATCGAAGAACACGCAAGATACCTGCAGAGAATACTGGAAGAGCAGCACAAGGTCAGCATCAGCAGCAACTCCCTCTCACTGAAACCCCCAGCCGAATCGCAACCGGAATCGCCAAAACCAACATCAGAAAAGAAGGAGGCCGAATCCGAAGCAGGCGCCGCCACTTCAGCTCAGCCATCATCCGAGGATAAATCACCAGACGCAGAATGCAAGTCGTCGCCGCCGGTGGGTAGCAAGAGAGCTAGGGTTCATGTCGGCGATGAGCACCAGTGTTCATAG
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| Protein seq | MSSQSVVAVKQITAPDKIVETCPSTKHSAHKLFDVKPDFQGLIDDNLSSSSQSSSIKIELIRSSSLPNILPFQKRSSEPEPESPLSHVSHPNVSEPVYSNSSTFCTSLFSSSSMETEPCRQLGTLPFLPHPPKCEQQVSAGHSSSSSLLVPGGDGDIGNAHDEPEQSDDLKDFLNLSGGDASDGSFHGENNAMAFAEQMEFQFLSEQLGIAITDNEESPRLDDIYGTPPQLSSLPVSSCSNQSVQKAGSPVKVQLSSPRSSSGSATTNKARLRWTLELHERFVEAVNKLDGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAKYLPETKEDKKASSEDKKSQSGSSGNDSVKKKNLQVAEALRMQMEVQKQLHEQLEVQRQLQLRIEEHARYLQRILEEQHKVSISSNSLSLKPPAESQPESPKPTSEKKEAESEAGAATSAQPSSEDKSPDAECKSSPPVGSKRARVHVGDEHQCS |
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| Function | Protein PHOSPHATE STARVATION RESPONSE 3 [UniProtKB/Swiss-Prot:Q6YXZ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0703900 | OsNip_06t0703900-01 | Chr06 | 29723508 | 29727074 | + | RAP2018-11-26 | ||
| CDS seq | ATGAGCTCCCAGAGTGTTGTTGCAGTGAAGCAGATTACTGCTCCGGACAAAATAGTGGAAACCTGTCCATCCACAAAACATTCTGCACATAAGCTGTTCGATGTTAAACCGGATTTTCAAGGGTTGATAGATGACAATTTGTCATCCTCCAGTCAGTCCTCAAGCATCAAGATTGAGCTGATCAGATCATCAAGCTTGCCAAATATACTGCCGTTTCAGAAAAGAAGCTCTGAACCTGAACCTGAAAGTCCACTGTCTCATGTTTCACATCCCAATGTTTCAGAGCCAGTTTACTCAAATTCTTCAACCTTCTGCACAAGTTTGTTTTCGTCGTCGTCGATGGAGACGGAGCCGTGCCGGCAATTGGGCACTCTACCATTCCTGCCTCACCCTCCTAAGTGTGAGCAGCAGGTTTCAGCAGGGCACTCATCAAGCTCCTCCCTGCTAGTACCTGGTGGTGATGGTGATATTGGCAATGCTCATGATGAACCTGAACAGTCAGATGATCTGAAGGATTTCCTCAATCTCTCTGGAGGAGATGCTTCTGATGGCAGCTTCCATGGAGAAAACAATGCCATGGCTTTTGCTGAGCAGATGGAGTTCCAGTTCTTGTCTGAGCAGCTAGGGATTGCCATCACTGACAATGAGGAGAGCCCTCGGTTAGATGACATATACGGCACGCCGCCGCAACTTTCATCACTTCCAGTATCATCTTGCTCCAACCAGAGTGTACAGAAAGCAGGATCTCCTGTGAAAGTTCAGCTTAGCTCGCCTCGGTCATCTTCGGGATCCGCGACAACTAACAAGGCGAGGTTGAGGTGGACACTGGAGCTCCATGAGCGTTTTGTAGAGGCTGTGAACAAGCTAGATGGACCTGAAAAGGCAACTCCTAAAGGTGTGCTGAAACTTATGAAAGTAGAAGGCCTGACTATCTACCATGTAAAGAGTCATTTGCAGAAGTATCGCCTCGCAAAATATCTCCCAGAGACTAAGGAAGACAAGAAGGCATCCTCAGAGGATAAGAAATCTCAGTCAGGTAGCAGTGGAAATGATTCAGTCAAAAAGAAGAACTTACAAGTGGCAGAAGCTCTACGAATGCAAATGGAGGTTCAGAAACAGCTTCATGAACAGTTAGAGGTGCAAAGGCAACTGCAGCTGCGAATCGAAGAACACGCAAGATACCTGCAGAGAATACTGGAAGAGCAGCACAAGGTCAGCATCAGCAGCAACTCCCTCTCACTGAAACCCCCAGCCGAATCGCAACCGGAATCGCCAAAACCAACATCAGAAAAGAAGGAGGCCGAATCCGAAGCAGGCGCCGCCACTTCAGCTCAGCCATCATCCGAGGATAAATCACCAGACGCAGAATGCAAGTCGTCGCCGCCGGTGGGTAGCAAGAGAGCTAGGGTTCATGTCGGCGATGAGCACCAGTGTTCATAG
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| Protein seq | MSSQSVVAVKQITAPDKIVETCPSTKHSAHKLFDVKPDFQGLIDDNLSSSSQSSSIKIELIRSSSLPNILPFQKRSSEPEPESPLSHVSHPNVSEPVYSNSSTFCTSLFSSSSMETEPCRQLGTLPFLPHPPKCEQQVSAGHSSSSSLLVPGGDGDIGNAHDEPEQSDDLKDFLNLSGGDASDGSFHGENNAMAFAEQMEFQFLSEQLGIAITDNEESPRLDDIYGTPPQLSSLPVSSCSNQSVQKAGSPVKVQLSSPRSSSGSATTNKARLRWTLELHERFVEAVNKLDGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAKYLPETKEDKKASSEDKKSQSGSSGNDSVKKKNLQVAEALRMQMEVQKQLHEQLEVQRQLQLRIEEHARYLQRILEEQHKVSISSNSLSLKPPAESQPESPKPTSEKKEAESEAGAATSAQPSSEDKSPDAECKSSPPVGSKRARVHVGDEHQCS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0703900 | OsNip_06t0703900-02 | Chr06 | 29723582 | 29727074 | + | RAP2018-11-26 | ||
| CDS seq | ATGAGCTCCCAGAGTGTTGTTGCAGTGAAGCAGATTACTGCTCCGGACAAAATAGTGGAAACCTGTCCATCCACAAAACATTCTGCACATAAGCTGTTCGATGTTAAACCGGATTTTCAAGGGTTGATAGATGACAATTTGTCATCCTCCAGTCAGTCCTCAAGCATCAAGATTGAGCTGATCAGATCATCAAGCTTGCCAAATATACTGCCGTTTCAGAAAAGAAGCTCTGAACCTGAACCTGAAAGTCCACTGTCTCATGTTTCACATCCCAATGTTTCAGAGCCAGTTTACTCAAATTCTTCAACCTTCTGCACAAGTTTGTTTTCGTCGTCGTCGATGGAGACGGAGCCGTGCCGGCAATTGGGCACTCTACCATTCCTGCCTCACCCTCCTAAGTGTGAGCAGCAGGTTTCAGCAGGGCACTCATCAAGCTCCTCCCTGCTAGTACCTGGTGGTGATGGTGATATTGGCAATGCTCATGATGAACCTGAACAGTCAGATGATCTGAAGGATTTCCTCAATCTCTCTGGAGGAGATGCTTCTGATGGCAGCTTCCATGGAGAAAACAATGCCATGGCTTTTGCTGAGCAGATGGAGTTCCAGTTCTTGTCTGAGCAGCTAGGGATTGCCATCACTGACAATGAGGAGAGCCCTCGGTTAGATGACATATACGGCACGCCGCCGCAACTTTCATCACTTCCAGTATCATCTTGCTCCAACCAGAGTGTACAGAAAGCAGGATCTCCTGTGAAAGTTCAGCTTAGCTCGCCTCGGTCATCTTCGGGATCCGCGACAACTAACAAGGCGAGGTTGAGGTGGACACTGGAGCTCCATGAGCGTTTTGTAGAGGCTGTGAACAAGCTAGATGGACCTGAAAAGGCAACTCCTAAAGGTGTGCTGAAACTTATGAAAGTAGAAGGCCTGACTATCTACCATGTAAAGAGTCATTTGCAGAAGTATCGCCTCGCAAAATATCTCCCAGAGACTAAGGAAGACAAGAAGGCATCCTCAGAGGATAAGAAATCTCAGTCAGGTAGCAGTGGAAATGATTCAGTCAAAAAGAAGAACTTACAAGTGGCAGAAGCTCTACGAATGCAAATGGAGGTTCAGAAACAGCTTCATGAACAGTTAGAGGTGCAAAGGCAACTGCAGCTGCGAATCGAAGAACACGCAAGATACCTGCAGAGAATACTGGAAGAGCAGCACAAGGTCAGCATCAGCAGCAACTCCCTCTCACTGAAACCCCCAGCCGAATCGCAACCGGAATCGCCAAAACCAACATCAGAAAAGAAGGAGGCCGAATCCGAAGCAGGCGCCGCCACTTCAGCTCAGCCATCATCCGAGGATAAATCACCAGACGCAGAATGCAAGTCGTCGCCGCCGGTGGGTAGCAAGAGAGCTAGGGTTCATGTCGGCGATGAGCACCAGTGTTCATAG
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| Protein seq | MSSQSVVAVKQITAPDKIVETCPSTKHSAHKLFDVKPDFQGLIDDNLSSSSQSSSIKIELIRSSSLPNILPFQKRSSEPEPESPLSHVSHPNVSEPVYSNSSTFCTSLFSSSSMETEPCRQLGTLPFLPHPPKCEQQVSAGHSSSSSLLVPGGDGDIGNAHDEPEQSDDLKDFLNLSGGDASDGSFHGENNAMAFAEQMEFQFLSEQLGIAITDNEESPRLDDIYGTPPQLSSLPVSSCSNQSVQKAGSPVKVQLSSPRSSSGSATTNKARLRWTLELHERFVEAVNKLDGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRLAKYLPETKEDKKASSEDKKSQSGSSGNDSVKKKNLQVAEALRMQMEVQKQLHEQLEVQRQLQLRIEEHARYLQRILEEQHKVSISSNSLSLKPPAESQPESPKPTSEKKEAESEAGAATSAQPSSEDKSPDAECKSSPPVGSKRARVHVGDEHQCS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.073239 | 0.272443 | 1.916105 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0139000 | RBH | 1.241382 | 1.423915 | 2.867785 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g49040 | RBH | 0.717279 | 0.173875 | 0.468033 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0703900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0028310 | SBH | 0.065314 | 2.274368 | 1.748300 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0028120 | SBH | 0.830115 | 0.728833 | 1.217121 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0028270 | SBH | 0.619640 | 2.521484 | 4.142800 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0027860 | SBH | 0.090400 | 0.094593 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0028350 | SBH | 3.144972 | 3.469493 | 6.817504 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0467400 | SBH | 4.544683 | 2.577458 | 5.3293875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0027720 | RBH | 0.149678 | 0.097098 | 0.503745 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0450900 | SBH | 5.8715015 | 1.559654 | 5.683077 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0028260 | SBH | 0.405519 | 0.196901 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0028310 | SBH | 1.782538 | 21.729767 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0027900 | SBH | 3.528042 | 24.403395 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0028560 | SBH | 0.817116 | 0.162216 | 0.572311 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0028180 | SBH | 0.443598 | 0.785024 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G028060 | SBH | 0.470170 | 0.828561 | 2.088798 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0028140 | RBH | 2.416501 | 1.514634 | 2.442400 |
