Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0139000 | OGI:02006950 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:2075629-2079136 | ||||||||
| Gene Symbol | PHR3, OsPHR3, Os-PHR3, OsPHL1, PHL1 | ||||||||||
| DNA seq | AAATTTGGGATAAGTATTCATATTATGGTAATCAGATTTACAGAGTGAAATAAAGTATACAGGGAACCAATGGCACCATCTCTTTACTGGCTCCATTTTCATCTGAGTTAGTAATATATACAAAAAAAAAGTCTTCAAAAAAGTATACCATAAAATCGCAAAGACCAATTTCTGCACTAACTCATGGAGGCACATCAGAATAAAACAAACATACAAGTCCAAGCACTATATTGTAAAAGGTTGCGACCATGATTATTCGTCATGCACCATTTCAAGATCAGCCTGAGGCTTTGTCTTTTTATTATCAACTTTTGAATGGCATTCTGCATCAGTATCTGTAATTCTACACTTTGACAAAGGTGCTGAAGAGGTTTCTGCTTTGTCCTCGGTTTTCTCCATCGGTGCGAATTCAGGAGATTCTCCTTCTGTTGTACTAGTCATTGAGGATATGGATTCTCTTGCTTTCTGTTGTTCTTCCAATATCTTCTGCAAATATCTTGCGTGTTCCTCTATGCGCAGCTGTAATTGCCTTTGTACCTGATGACCAAGAAAGATGTTAACACTGCAAGTTTATCTAAATATATAATATTCAGGTAAGCATGCTTTGATGAACAATAATGTGTAAATTTCCTTAATACAAAGGTGCGCAATCCTTTTGCGTATTCCCGAAAAAATAATGTGTAAATTGCTCCAAAAAGAATACTGTGTAAATACTAAGTCTTGTAACCATAATCTGGAATCAGGGCTGCTGCAAACATATGAACATACAGTGTCACCTTAATTAGCCTTCAAAATACTGCCCTGACATGTCTGATGCTTACCTCTAGTTGTTCATGGAGTTGTTTCTGGACCTCCATTTGCATCCGAAGAGCTTCTGCCATTTGAGCACTCCTAATTAAGAAACAGAAAACAGTATGAAGTTTTACAGTTTATGCATGCAGACAGCAGGATATGTTCAATGTTAGGCAGTAAGTCATTGAAAGGAAGGGAGATGCTCACTTCTTTTTTGCATGATCATTTCCATTAGCCACTGATTTTGTTTTCTTTTCTTCTTGCTTCTTGTCTAGATCGAGCATGCATCAGAACCAATAGTTAATAATTACCGACAAAGCTAATTATTTCATATTTCCTAAGATATTTAAACTTCCTCTTTGGCTTAATTGCCTTACCTTCTTTTGTCTCTGGAAGATACTTCGCAAGCCGATACTTCTGCATTGTGACAAGTAGTGTTTTAACCATTATAAATAATGATTTTATATGAAATAATTTGACTATGGATCAAAAAAAATTCACTAAAGCACCTGTAAGTGGCTCTTTATATGATAGATGGTCAAGCCCTCTACCTTCATAAGCTTCAGAACACCCTTGGGAGTTGCCTCTACAAGATGTATCAAATAGAACATAAAAGGATGGTTTTATTTTCTCAAGATCAAATTCCTCTCAATGAACTAGAGTGATCACCCTACTTTCTGGCCCTTCAAGCTTGTTCACGGCATCTACGAAACGCTCGTGGAGCTCCGGTGTCCACCTCAGTCTTGGTTTGTTACATGATGCAGTTCCAGATGAAGACCGAGATGAACTCAACTGAACTTTAGCAGGAGATCTTGCATCCTGCAGATCCTCCTGATCAGAGCAAGATGACACTGGAAGAGACATAAGTTGCGGTGGTCTGTCGTATATGTCCTAAGGAACAAGAAAATAAGTGATTAAAATGCAAATCAAGCCATGATAAATATTCACAAGTGAACATTGAAAAAACCTTTTGCAAGTAGTAATTGATACCCATTAAATTAGAGGATAAATAAACATATAATTTAGTACAAAAATATCAATGATGAAGCTAAGGAACTCACATCTAACCGAGGACTCTCCTCATTGTTTGAGATCGCAATTCCGAGCTGTTCAGACAAGAACTGAAACTCCATCTGCTCATTATAAGCCATGGCACTGCATTTCCCATGGAAGCTACAATCTGAAGAGAGGTTAAGAAAGTCCTTGAGGTCATCTGTGTGTTCATCATCAGCATGACCACTATTTCTGAGATCAGCATCAAGGAGCATCAGAGAGCTGGATGATTGCCCAGCTGAATTCTGCTGCTGCTCACATTTAGGAGGTTGTGGCAGGAAAGGCAAATAACCGGTTTTTCGGCATGAACCAGAGTTCATCGGTGATGAGGTGTACAGACTTGTACAAAATGTAGAAGAACTAGACAAAATTGGGTCCGAAAACTCGGCTTGCGACATGCGAGAAAGTGAACTTTCACCATTTGAGTCAGTACTAAATGGAAGGATCTTTGGCAGGCTAGATGAACTGATTGATTCGGTCTTAATGTTTGAGGATTGGATAGCACATGATAATGAGGTACTATTTGTTGAACCACAGAGATCATAGTCATAGTTAGCGTTGGAGAGCACATGAGCTGATGGCTGTGGAACAGTGTATGCTTGTGCGATTTTGTCAGGGCCACTGAATTGCTTTACAGCAATGACACTCTGTGTGCTCATGGCTCCTTGAGATTGTTGATTTCTTGGTCATTCACACCTAATATGAGAACTGAGATGGAATGCTTGCTCCAAGCCTGCACTACAAAAGTAAATATCCAGTCAATAGCACTGAAAAATTGAAGCCTTATCAGAGCATGTAGTCCAAAATGTGTGTGTTTTTTTTTTGTCATAAATAGATTGAAATTTTGTTAAGAAATATGGGTACAGAAGCTCAATCTTGTCGATTGGGCTTGGCTTCTATCAGAAAGATAACTTGGAGACAAAAGAAGAGATAAAACCATGCTAACTTAAACTAATATGCTGAATATAGTAAAATTCTGGACAAAACAAGATGGACAAATGATTTGAACCTTTCAACAATCTAACAGCAGCCAACCTTTAAGTGACAAGAAAAGTCTTGTCTATACATCAGAGCACACATCAAACTTTCCTATTCAGAAGCCAAACTCAAATCAAATTTAAGAAAAATAGAAACATATACAAGCCACCTATGAAAATATTGTATGGTTTGAGGTAAAATCACATCAATTAAGGTCATGGCATTCTCTTTTCCTCAGAAAGAGTTGCGCACTTCAAAAGAAAATCATGACAATTCCAACCGATGCCCGGGAAGAAAAGCAGAAAGGGGAAGAACAGAAATCTGAAAGAGAGCAAAAGGAGATAGGCAGCTGTCGCCAGAGTAAGCACACAAATAAACTAAAAAACGCAACTGCACCATGAGAATTGAGAAATGAGAACAAGACAACCTAGGACTGCAAATCCAAGAAAGAACGAAGCCAAGAAGGCGTGAATCCAGGTAAGAAAATGCAAACAAGATGGAAGATTCAACTCCATCTGATAATCAAGAAGATGAGTTGAAGAGATTCAGAAACAAGAACCTGTCAGTCCTCTCCTTCCACAGCAAGCACCCTCTCTCCTCTCTTCTCCTATCCAAACTGTCCTCTCTCGCTCCCTCTCTCTCTCTCTCTAAATTACTCCTGCCTGCAAATGATTAGTCATTTCTG
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| CDS seq | ATGAGCACACAGAGTGTCATTGCTGTAAAGCAATTCAGTGGCCCTGACAAAATCGCACAAGCATACACTGTTCCACAGCCATCAGCTCATGTGCTCTCCAACGCTAACTATGACTATGATCTCTGTGGTTCAACAAATAGTACCTCATTATCATGTGCTATCCAATCCTCAAACATTAAGACCGAATCAATCAGTTCATCTAGCCTGCCAAAGATCCTTCCATTTAGTACTGACTCAAATGGTGAAAGTTCACTTTCTCGCATGTCGCAAGCCGAGTTTTCGGACCCAATTTTGTCTAGTTCTTCTACATTTTGTACAAGTCTGTACACCTCATCACCGATGAACTCTGGTTCATGCCGAAAAACCGGTTATTTGCCTTTCCTGCCACAACCTCCTAAATGTGAGCAGCAGCAGAATTCAGCTGGGCAATCATCCAGCTCTCTGATGCTCCTTGATGCTGATCTCAGAAATAGTGGTCATGCTGATGATGAACACACAGATGACCTCAAGGACTTTCTTAACCTCTCTTCAGATTGTAGCTTCCATGGGAAATGCAGTGCCATGGCTTATAATGAGCAGATGGAGTTTCAGTTCTTGTCTGAACAGCTCGGAATTGCGATCTCAAACAATGAGGAGAGTCCTCGGTTAGATGACATATACGACAGACCACCGCAACTTATGTCTCTTCCAGTGTCATCTTGCTCTGATCAGGAGGATCTGCAGGATGCAAGATCTCCTGCTAAAGTTCAGTTGAGTTCATCTCGGTCTTCATCTGGAACTGCATCATGTAACAAACCAAGACTGAGGTGGACACCGGAGCTCCACGAGCGTTTCGTAGATGCCGTGAACAAGCTTGAAGGGCCAGAAAAGGCAACTCCCAAGGGTGTTCTGAAGCTTATGAAGGTAGAGGGCTTGACCATCTATCATATAAAGAGCCACTTACAGAAGTATCGGCTTGCGAAGTATCTTCCAGAGACAAAAGAAGACAAGAAGCAAGAAGAAAAGAAAACAAAATCAGTGGCTAATGGAAATGATCATGCAAAAAAGAAGAGTGCTCAAATGGCAGAAGCTCTTCGGATGCAAATGGAGGTCCAGAAACAACTCCATGAACAACTAGAGGTACAAAGGCAATTACAGCTGCGCATAGAGGAACACGCAAGATATTTGCAGAAGATATTGGAAGAACAACAGAAAGCAAGAGAATCCATATCCTCAATGACTAGTACAACAGAAGGAGAATCTCCTGAATTCGCACCGATGGAGAAAACCGAGGACAAAGCAGAAACCTCTTCAGCACCTTTGTCAAAGTGTAGAATTACAGATACTGATGCAGAATGCCATTCAAAAGTTGATAATAAAAAGACAAAGCCTCAGGCTGATCTTGAAATGGTGCATGACGAATAA
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| Protein seq | MSTQSVIAVKQFSGPDKIAQAYTVPQPSAHVLSNANYDYDLCGSTNSTSLSCAIQSSNIKTESISSSSLPKILPFSTDSNGESSLSRMSQAEFSDPILSSSSTFCTSLYTSSPMNSGSCRKTGYLPFLPQPPKCEQQQNSAGQSSSSLMLLDADLRNSGHADDEHTDDLKDFLNLSSDCSFHGKCSAMAYNEQMEFQFLSEQLGIAISNNEESPRLDDIYDRPPQLMSLPVSSCSDQEDLQDARSPAKVQLSSSRSSSGTASCNKPRLRWTPELHERFVDAVNKLEGPEKATPKGVLKLMKVEGLTIYHIKSHLQKYRLAKYLPETKEDKKQEEKKTKSVANGNDHAKKKSAQMAEALRMQMEVQKQLHEQLEVQRQLQLRIEEHARYLQKILEEQQKARESISSMTSTTEGESPEFAPMEKTEDKAETSSAPLSKCRITDTDAECHSKVDNKKTKPQADLEMVHDE |
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| Function | Protein PHOSPHATE STARVATION RESPONSE 3 [UniProtKB/Swiss-Prot:Q6YXZ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0139000 | OsNip_02t0139000-01 | Chr02 | 2075629 | 2079136 | - | RAP2018-11-26 | ||
| CDS seq | ATGAGCACACAGAGTGTCATTGCTGTAAAGCAATTCAGTGGCCCTGACAAAATCGCACAAGCATACACTGTTCCACAGCCATCAGCTCATGTGCTCTCCAACGCTAACTATGACTATGATCTCTGTGGTTCAACAAATAGTACCTCATTATCATGTGCTATCCAATCCTCAAACATTAAGACCGAATCAATCAGTTCATCTAGCCTGCCAAAGATCCTTCCATTTAGTACTGACTCAAATGGTGAAAGTTCACTTTCTCGCATGTCGCAAGCCGAGTTTTCGGACCCAATTTTGTCTAGTTCTTCTACATTTTGTACAAGTCTGTACACCTCATCACCGATGAACTCTGGTTCATGCCGAAAAACCGGTTATTTGCCTTTCCTGCCACAACCTCCTAAATGTGAGCAGCAGCAGAATTCAGCTGGGCAATCATCCAGCTCTCTGATGCTCCTTGATGCTGATCTCAGAAATAGTGGTCATGCTGATGATGAACACACAGATGACCTCAAGGACTTTCTTAACCTCTCTTCAGATTGTAGCTTCCATGGGAAATGCAGTGCCATGGCTTATAATGAGCAGATGGAGTTTCAGTTCTTGTCTGAACAGCTCGGAATTGCGATCTCAAACAATGAGGAGAGTCCTCGGTTAGATGACATATACGACAGACCACCGCAACTTATGTCTCTTCCAGTGTCATCTTGCTCTGATCAGGAGGATCTGCAGGATGCAAGATCTCCTGCTAAAGTTCAGTTGAGTTCATCTCGGTCTTCATCTGGAACTGCATCATGTAACAAACCAAGACTGAGGTGGACACCGGAGCTCCACGAGCGTTTCGTAGATGCCGTGAACAAGCTTGAAGGGCCAGAAAAGGCAACTCCCAAGGGTGTTCTGAAGCTTATGAAGGTAGAGGGCTTGACCATCTATCATATAAAGAGCCACTTACAGAAGTATCGGCTTGCGAAGTATCTTCCAGAGACAAAAGAAGACAAGAAGCAAGAAGAAAAGAAAACAAAATCAGTGGCTAATGGAAATGATCATGCAAAAAAGAAGAGTGCTCAAATGGCAGAAGCTCTTCGGATGCAAATGGAGGTCCAGAAACAACTCCATGAACAACTAGAGGTACAAAGGCAATTACAGCTGCGCATAGAGGAACACGCAAGATATTTGCAGAAGATATTGGAAGAACAACAGAAAGCAAGAGAATCCATATCCTCAATGACTAGTACAACAGAAGGAGAATCTCCTGAATTCGCACCGATGGAGAAAACCGAGGACAAAGCAGAAACCTCTTCAGCACCTTTGTCAAAGTGTAGAATTACAGATACTGATGCAGAATGCCATTCAAAAGTTGATAATAAAAAGACAAAGCCTCAGGCTGATCTTGAAATGGTGCATGACGAATAA
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| Protein seq | MSTQSVIAVKQFSGPDKIAQAYTVPQPSAHVLSNANYDYDLCGSTNSTSLSCAIQSSNIKTESISSSSLPKILPFSTDSNGESSLSRMSQAEFSDPILSSSSTFCTSLYTSSPMNSGSCRKTGYLPFLPQPPKCEQQQNSAGQSSSSLMLLDADLRNSGHADDEHTDDLKDFLNLSSDCSFHGKCSAMAYNEQMEFQFLSEQLGIAISNNEESPRLDDIYDRPPQLMSLPVSSCSDQEDLQDARSPAKVQLSSSRSSSGTASCNKPRLRWTPELHERFVDAVNKLEGPEKATPKGVLKLMKVEGLTIYHIKSHLQKYRLAKYLPETKEDKKQEEKKTKSVANGNDHAKKKSAQMAEALRMQMEVQKQLHEQLEVQRQLQLRIEEHARYLQKILEEQQKARESISSMTSTTEGESPEFAPMEKTEDKAETSSAPLSKCRITDTDAECHSKVDNKKTKPQADLEMVHDE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.241382 | 1.423915 | 2.867785 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0703900 | RBH | 1.073239 | 0.272443 | 1.916105 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g04640 | RBH | 0.778266 | 0.907104 | 0.691642 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0139000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0003050 | RBH | 1.447856 | 21.966095 | 4.789634 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0003130 | RBH | 0.732578 | 0.562113 | 2.121361 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0003070 | RBH | 2.647444 | 14.105331 | 7.494786 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0003020 | RBH | 0.193421 | 0.280983 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0003070 | RBH | 13.525763 | 2.619951 | 5.724739 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0035100 | RBH | 9.533156 | 12.1046075 | 3.0745055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0002980 | RBH | 0.655145 | 0.975051 | 0.765472 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0035600 | RBH | 4.0032625 | 8.342144 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0003050 | RBH | 0.234168 | 0.252685 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0002980 | RBH | 1.357038 | 10.002837 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0003050 | RBH | 7.999843 | 16.383904 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0003140 | RBH | 2.135509 | 0.660534 | 0.919856 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0003080 | RBH | 0.594162 | 1.452012 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G003080 | RBH | 1.442609 | 0.447173 | 2.136376 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0003010 | RBH | 1.690364 | 26.637581 | 3.729132 |
