Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0703500 | OGI:06083270 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:29703558-29708687 | ||||||||
| Gene Symbol | SPL12, OsSPL12, DLN176, OsDLN176 | ||||||||||
| DNA seq | CCTGAATGAACAACACACGAATCGATCTCAGCTCATTCCCAAGACGAGTAGTAGATATGTCAGATTCTGTGGAACAAAACAGATCATTTCATGATCATGAACACTTCTCATCCAATGGCAAATATCCTGGTGGTTTGGTTTCAAAAATAGAAATAATAAATCCTGGGGTTGCAGGACAATTCGCCCCCAAATTATTCAGAGTCCATCACTGACAGGGTAAGATCATGAACGGAGTAACCAGTCATCAACCCGTTCCAAATAGATGCAGCAGAATCAGTGCAGATGGCCATAGCCGGAGCTGCTGCCATTGCCAGGATGCATGAACGCCTGAGCCTGCGAGGCATGATCGAGCGGAGGCGGGTCGTCGCCGTCTTGCCAGAATCCTCCTCCTCCGGTGGACGGGTGCAGAGCATGCATCACACTGACAGGGTTCGTCGGGGCGGTGACGGTGGCGGCGGCAACGGCGAGGGGCGGCATCACTCCACCGGGATGCACCTGGGAGCCGGCCTGAACGTCGGCCGGGCCCCAGGAATCGCTTGACAGAAGAGAGAGAGCACGCCGAAGATCCGGGGCTCCATTCGAGTTGGAGGACACGACGGCACAGGCTGGATCCACACCTGAAAATCATCACAAATCATATGCATCATCAGAATATCAGGTATTCATATATATGATCCTGCAATTTGGAGAGAATAATTTAGAATTAGACTGCCCAACAGATTAAAAGGGACACTTTTTGGGGGGGCTCTGAATTTATCATCTTCAGTTCTGTTCTGAACTCTGTACTCGTGTTTGTTTCTGTCTTTCTCGCAAAAGCCGGGTCAATGAAGATCTATTGTCTAAAAATCGTAGATCATCTTTAGTTGCTTGTGCCTGGTGTATTCTATGATCCTGCAACTGGAGATGATTTAGACAGCTCAACAGAAAGAAAAGGAATACTTTTTTGGGGGGTCTGAATTGAAGGCCTGTATCTATTGAGATGACTCACACTCCTTGCAAGTTGCAACACTAAGCTGGCATATCCAATAAGTATTTGTTGGTCCCAGGTTAGTACCAGGCACAGATGTGGGTACTGGACTACCAGCTAAAAGTTCTGGTGAATGTCATTATCAGGGGCAGTGATGGGGCCATAAACCTAGTAAATGGGACCTAGTCGTTTCTTGTCGATCTCTCGCGTGAAACACATTTCTTGCTTTTTGGGATGGTGAAAGGCTCCCAGGCTCCACCCAGAGAAAAAATGGAGCAGTTCAGATTGAAAGATCAACATACCAAGGCAGGAAGTCCAAAAAGCTTGTAACAGATAATTGGTGGATCTAGCCTCTCTGTTTTTGTTTTTGTTTTTTTGAGAAACAATTTGTGGTTCTAGCTTGTCCATAAAGCAAGCTGATGCAAATGGATAAAATGAGTAATCAGTAGTTACTGAAAAAAAGGGAGCAAAATGATGTGTTCTTATGACTAAGTAGCTTGTTTAATCCAAACTCCAAGTCAGGAATGCTGACTGTTTAGCAACAAAGACTTTTCAGAAGATTGTAGCCGTATGAAAAGGAATTATGGAGAATAAAATGCTGTCTCGGCGTTGTCGAATAGCAGAGAGGTGAACAGTACAGATAACAATCAAACAAAAGGTCAAATCAGTCGGACCTATTTACTGATAAGAAATTGAATTGCTAAAATAGGTAGTCCCATTTAGATCATTAAATAAAAACACATGGTTAAAAACTTAAAATTGAAGATGCTGCAACAGCTGCATGTCTTTTCTTTAAAGTTCAGTGATGAATTGAGAGATGTTAATGTACCTTGGTTGAGGACCTTCGGGGTGTTTCCCTTGAATGGTATGAGCCCATCAAAATCATGATGATGCACCGTATGCGACACAACATTGCCTGGCATCTGCAGGGTAGAGAAATTCAGATCCTCAAGGCCTATAGTTTTCATTGGCTTCATCCAGGGGAGTTTTGCTTCTGTAAATTTGAAGCCTCCCAGGTTGTCACATGAAGAAATTGCATTGCTTCTCACTTGGCCAAAAGGAGATTGGCCAAAGTAAATATCTGTCTGCTGCCTTGCATCTGCAATGCAAAATCGCAAACACTGTCACCATGAAAGATTTGTGTAGGACTTGGTAAAAACGCGTCAAGTGGAAAACTACATCATGAAAATACACAAGCTACCATATATGATTACTATGCATTATTATATAACAATATAATAGTAACTGTCAAGACTCAAGAGGATGGGTTAAGCTCCCTTCTAAAAAGAAGTGTGCCACCAGGTAACACCCACCAGTCGTGCGTATGCAGAAAACTGGATATGTTACATGTTAAAATGCTTACGGTATCATCCTACTATTTCAGCAGTATTGATTGGGTTAAAGGAATAGCTTTCAGTCATCAAAACAGAACAAGGCATCTAGCATTGTGATGCATCTAAGGGGTCAGTACTACCGTAAAACATCGTGGCGAGCCTTGATGAACCAAATGAAATTGCCTCTTGTTGCGGTTTCCTTCTTCGTGCATTATGATCAGATAGACGCCTGCGGCAACTTTTCTTTTTCTGGTCAAATTCAGCTAAACCATGAAACCTACAAAACAATAGAGTACATAAGACAGCAAACTAGTAAAGATCAATAACCTCGAACCTTGCGTTGTACTTTAATCCAAGCAAACTAGTGCTACTTCTTTGACTTTATTTATACTGGTATATGCTTTATGCAATACAGATAGAGACAATTTTCTTCATTGTTGTTGTGTCTATTGATTTAAAGAGGGTAGTGCATATAAAAAAGGAAGTCTTGAAAGCATGCAAAGTGAAATAAGATTATGCTCTCACCGACTACACTGTTGGCAAAAACGGCGCTCCAGACCAGAAACAATAACCTTTGGTGCCTTAGAATGAGCTTCACAAACTTTGTGCTTGCGATGGTATTCTCTTGCGGAGGACAGATCGACTTTGCAGCCTTCAACTTGGCAGTATGAGCTTTGTGTGCTCTGCTGAGACACCTTCATCTTCTTGACCACAGTAGATGGACAAGTCACACCTGAAGCTGCAGAGGAGCTCTTGACATTCTGCCCTCCACAAACATTTTCAAAGTAAGTTCTCTTCCCTAACTTGAGTCCTATTACCGGCTCACCATGGCTAACTGCCACAGCTGGAGAAGTGCCCGAGTCTTCAACTCTACCGGCCTCGCCATCCTTGCACATGTTCTTGCCATGCCCTTTGACAGAAGCAAACCTGAACTCTAAGCTGTTCCCCAGCTTGGATGAGGAATCGAACGACGCTGACAAGGAGCTCTTCGATGAACCATTGGCTAGCTCCGAGCTAGAAGTGAACGTGCCACCGGATGAATTGGTGGATCCATGATTTGCGGCCGCGACAACTACACCTCTTGGTTCAGGGTGAGGTATGCTCTTGGGATTTTCCATTGTATTCGGACCGAAAGGCGCTGGATTTTCCCAGTCCCAAAACACAGGGCTCTTCTGATTCCAGTTCATCCCAAAAGAAGCCATGGCTGAATTAAGGATCTCAACTGCTGCTGCTCACACTTGTATATATTGCAAATCTGATAGGATTTCAAGAAACAAGAAGGAACAGAAAGAACACACGTCACAACAAATTGCAGAACTTGGATGAGAAAGGCAATAAACATATCTCGGGTACCAAAATCATTTTGTCTTTCAGATAAAAAGACAAGTACAACATACCATCCAAAATGAATTATACGCGCTTTATTGTGGGGATCATAGCAAGAGAAGAAAGGCGAAAACGATCAATTACCTCAACTTTCCTTTCTCCCAGAAAAGAAACACAGTGGATCCTTCCTCTCCCTGCAAATCTTGCCCTCAATCAGCATGACCATGCATAGCACAACCTTGAGCATAAATCAAACCGATCCGAGGAGGTGATGAATAACAAGTAGCAGCGTTGAAAGTTGAAACCAATTGGCTGGCAGAACTAAAGCAACAGAGACTCCATTGTTGTTCTTGGCTGAGTTCTCACTCACCTCGACTTGAGAGAGATCCTATCCCACTTGTTTCCCCGACCTAAAAGACGACAGCATCAACCCCATCAAGGCTGGCCCCCATTCATCACCACAACCACCCGCTATTTAAACCCTTTCCAATCTATCACCACAACAACTACCCCAAGTCAATCAGAGCTGCATTATTTGCTCCTTGTTACCGCACATGAACCAGTTGCTTGTTGGGGAGCATAAATAAACCAAACCATATATGAAATAAAAAGCAAAGAAACTATTTTGAAGGAAGTAAAAGAAAGAACAATAATACTTGATGTGAAACCAAGAATCTCACCTCCTTTAGCTGAGAGAGAATCGTTATCCCCGTTGTATTCTACCTGGATGAAAACAATAGCCATAAGTTTTGTGGCAAAAGAAGATAGGAGAAAGAAAAGAAAAAACACAAGAAAAAGCAAAAGCACCAAGATAAAGAGGACATGACTCACAAAGATCCAACACACACAAGATGGCAACCTTTCCCTCCTAACTAGTATCTCCCAAAACCCCACCTGTGAGCCTGAGAGCCTGAGACTGAACAGTAACAAGAGGAGGAGGCAGCAACAAGAGGAGAGTGAGGCCCAGTGGATGGCTGCCTCCTCCTACAGCAACCAACAAAAGCACATGCCCTTCCCTGACACTCCAATAATGCTCAGAACAAACACCAACTGGTAGTGTAGTGAGTAGTGACTATACCAGTTTACTTCTACTTCTACTACTACTATGGCCTCAACTACTCCACTCCTCAAAAGCAGCAGCAGCAGCAACCCTAAGAAAGAAGAACAACTCCTTTTTGTGGTGGAAATCACATTGTAGCCCACCCCTCACCCCCTGCCTAAAGATGATTGAATGATGTGGAGAATCACTCCTCCACAAACAATGCCATGCCATAAAAAGATTCTGGTTCTTGCAAAGAAAAGATAGGGATAATTTCAGACCTGGTTTTGCTGCCTGGAGCTATGCCATGGTGCTGCTTTTCTGCTATAATAATCTCTTTCTTCTTCCCAGAGTACCAAGTAGTACCAAACTACCAACTAACAGCAACACCAGAGAGAGAGAGAGTTTGATCTATCTGGTGTTCTTTGCAGCAGCAGTGGTGCTTTGCTTGATTTGATCATTGG
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| CDS seq | ATGGCTTCTTTTGGGATGAACTGGAATCAGAAGAGCCCTGTGTTTTGGGACTGGGAAAATCCAGCGCCTTTCGGTCCGAATACAATGGAAAATCCCAAGAGCATACCTCACCCTGAACCAAGAGGTGTAGTTGTCGCGGCCGCAAATCATGGATCCACCAATTCATCCGGTGGCACGTTCACTTCTAGCTCGGAGCTAGCCAATGGTTCATCGAAGAGCTCCTTGTCAGCGTCGTTCGATTCCTCATCCAAGCTGGGGAACAGCTTAGAGTTCAGGTTTGCTTCTGTCAAAGGGCATGGCAAGAACATGTGCAAGGATGGCGAGGCCGGTAGAGTTGAAGACTCGGGCACTTCTCCAGCTGTGGCAGTTAGCCATGGTGAGCCGGTAATAGGACTCAAGTTAGGGAAGAGAACTTACTTTGAAAATGTTTGTGGAGGGCAGAATGTCAAGAGCTCCTCTGCAGCTTCAGGTGTGACTTGTCCATCTACTGTGGTCAAGAAGATGAAGGTGTCTCAGCAGAGCACACAAAGCTCATACTGCCAAGTTGAAGGCTGCAAAGTCGATCTGTCCTCCGCAAGAGAATACCATCGCAAGCACAAAGTTTGTGAAGCTCATTCTAAGGCACCAAAGGTTATTGTTTCTGGTCTGGAGCGCCGTTTTTGCCAACAGTGTAGTCGGTTTCATGGTTTAGCTGAATTTGACCAGAAAAAGAAAAGTTGCCGCAGGCGTCTATCTGATCATAATGCACGAAGAAGGAAACCGCAACAAGAGGCAATTTCATTTGGTTCATCAAGGCTCGCCACGATGTTTTACGATGCAAGGCAGCAGACAGATATTTACTTTGGCCAATCTCCTTTTGGCCAAGTGAGAAGCAATGCAATTTCTTCATGTGACAACCTGGGAGGCTTCAAATTTACAGAAGCAAAACTCCCCTGGATGAAGCCAATGAAAACTATAGGCCTTGAGGATCTGAATTTCTCTACCCTGCAGATGCCAGGCAATGTTGTGTCGCATACGGTGCATCATCATGATTTTGATGGGCTCATACCATTCAAGGGAAACACCCCGAAGGTCCTCAACCAAGGTGTGGATCCAGCCTGTGCCGTCGTGTCCTCCAACTCGAATGGAGCCCCGGATCTTCGGCGTGCTCTCTCTCTTCTGTCAAGCGATTCCTGGGGCCCGGCCGACGTTCAGGCCGGCTCCCAGGTGCATCCCGGTGGAGTGATGCCGCCCCTCGCCGTTGCCGCCGCCACCGTCACCGCCCCGACGAACCCTGTCAGTGTGATGCATGCTCTGCACCCGTCCACCGGAGGAGGAGGATTCTGGCAAGACGGCGACGACCCGCCTCCGCTCGATCATGCCTCGCAGGCTCAGGCGTTCATGCATCCTGGCAATGGCAGCAGCTCCGGCTATGGCCATCTGCACTGA
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| Protein seq | MASFGMNWNQKSPVFWDWENPAPFGPNTMENPKSIPHPEPRGVVVAAANHGSTNSSGGTFTSSSELANGSSKSSLSASFDSSSKLGNSLEFRFASVKGHGKNMCKDGEAGRVEDSGTSPAVAVSHGEPVIGLKLGKRTYFENVCGGQNVKSSSAASGVTCPSTVVKKMKVSQQSTQSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARRRKPQQEAISFGSSRLATMFYDARQQTDIYFGQSPFGQVRSNAISSCDNLGGFKFTEAKLPWMKPMKTIGLEDLNFSTLQMPGNVVSHTVHHHDFDGLIPFKGNTPKVLNQGVDPACAVVSSNSNGAPDLRRALSLLSSDSWGPADVQAGSQVHPGGVMPPLAVAAATVTAPTNPVSVMHALHPSTGGGGFWQDGDDPPPLDHASQAQAFMHPGNGSSSGYGHLH |
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| Function | Squamosa promoter-binding-like protein 12 [UniProtKB/Swiss-Prot:Q5Z818] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0703500 | OsNip_06t0703500-01 | Chr06 | 29703558 | 29708687 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCTTCTTTTGGGATGAACTGGAATCAGAAGAGCCCTGTGTTTTGGGACTGGGAAAATCCAGCGCCTTTCGGTCCGAATACAATGGAAAATCCCAAGAGCATACCTCACCCTGAACCAAGAGGTGTAGTTGTCGCGGCCGCAAATCATGGATCCACCAATTCATCCGGTGGCACGTTCACTTCTAGCTCGGAGCTAGCCAATGGTTCATCGAAGAGCTCCTTGTCAGCGTCGTTCGATTCCTCATCCAAGCTGGGGAACAGCTTAGAGTTCAGGTTTGCTTCTGTCAAAGGGCATGGCAAGAACATGTGCAAGGATGGCGAGGCCGGTAGAGTTGAAGACTCGGGCACTTCTCCAGCTGTGGCAGTTAGCCATGGTGAGCCGGTAATAGGACTCAAGTTAGGGAAGAGAACTTACTTTGAAAATGTTTGTGGAGGGCAGAATGTCAAGAGCTCCTCTGCAGCTTCAGGTGTGACTTGTCCATCTACTGTGGTCAAGAAGATGAAGGTGTCTCAGCAGAGCACACAAAGCTCATACTGCCAAGTTGAAGGCTGCAAAGTCGATCTGTCCTCCGCAAGAGAATACCATCGCAAGCACAAAGTTTGTGAAGCTCATTCTAAGGCACCAAAGGTTATTGTTTCTGGTCTGGAGCGCCGTTTTTGCCAACAGTGTAGTCGGTTTCATGGTTTAGCTGAATTTGACCAGAAAAAGAAAAGTTGCCGCAGGCGTCTATCTGATCATAATGCACGAAGAAGGAAACCGCAACAAGAGGCAATTTCATTTGGTTCATCAAGGCTCGCCACGATGTTTTACGATGCAAGGCAGCAGACAGATATTTACTTTGGCCAATCTCCTTTTGGCCAAGTGAGAAGCAATGCAATTTCTTCATGTGACAACCTGGGAGGCTTCAAATTTACAGAAGCAAAACTCCCCTGGATGAAGCCAATGAAAACTATAGGCCTTGAGGATCTGAATTTCTCTACCCTGCAGATGCCAGGCAATGTTGTGTCGCATACGGTGCATCATCATGATTTTGATGGGCTCATACCATTCAAGGGAAACACCCCGAAGGTCCTCAACCAAGGTGTGGATCCAGCCTGTGCCGTCGTGTCCTCCAACTCGAATGGAGCCCCGGATCTTCGGCGTGCTCTCTCTCTTCTGTCAAGCGATTCCTGGGGCCCGGCCGACGTTCAGGCCGGCTCCCAGGTGCATCCCGGTGGAGTGATGCCGCCCCTCGCCGTTGCCGCCGCCACCGTCACCGCCCCGACGAACCCTGTCAGTGTGATGCATGCTCTGCACCCGTCCACCGGAGGAGGAGGATTCTGGCAAGACGGCGACGACCCGCCTCCGCTCGATCATGCCTCGCAGGCTCAGGCGTTCATGCATCCTGGCAATGGCAGCAGCTCCGGCTATGGCCATCTGCACTGA
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| Protein seq | MASFGMNWNQKSPVFWDWENPAPFGPNTMENPKSIPHPEPRGVVVAAANHGSTNSSGGTFTSSSELANGSSKSSLSASFDSSSKLGNSLEFRFASVKGHGKNMCKDGEAGRVEDSGTSPAVAVSHGEPVIGLKLGKRTYFENVCGGQNVKSSSAASGVTCPSTVVKKMKVSQQSTQSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARRRKPQQEAISFGSSRLATMFYDARQQTDIYFGQSPFGQVRSNAISSCDNLGGFKFTEAKLPWMKPMKTIGLEDLNFSTLQMPGNVVSHTVHHHDFDGLIPFKGNTPKVLNQGVDPACAVVSSNSNGAPDLRRALSLLSSDSWGPADVQAGSQVHPGGVMPPLAVAAATVTAPTNPVSVMHALHPSTGGGGFWQDGDDPPPLDHASQAQAFMHPGNGSSSGYGHLH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0703500 | OsNip_06t0703500-02 | Chr06 | 29703626 | 29708260 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCTTCTTTTGGGATGAACTGGAATCAGAAGAGCCCTGTGTTTTGGGACTGGGAAAATCCAGCGCCTTTCGGTCCGAATACAATGGAAAATCCCAAGAGCATACCTCACCCTGAACCAAGAGGTGTAGTTGTCGCGGCCGCAAATCATGGATCCACCAATTCATCCGGTGGCACGTTCACTTCTAGCTCGGAGCTAGCCAATGGTTCATCGAAGAGCTCCTTGTCAGCGTCGTTCGATTCCTCATCCAAGCTGGGGAACAGCTTAGAGTTCAGGTTTGCTTCTGTCAAAGGGCATGGCAAGAACATGTGCAAGGATGGCGAGGCCGGTAGAGTTGAAGACTCGGGCACTTCTCCAGCTGTGGCAGTTAGCCATGGTGAGCCGGTAATAGGACTCAAGTTAGGGAAGAGAACTTACTTTGAAAATGTTTGTGGAGGGCAGAATGTCAAGAGCTCCTCTGCAGCTTCAGGTGTGACTTGTCCATCTACTGTGGTCAAGAAGATGAAGGTGTCTCAGCAGAGCACACAAAGCTCATACTGCCAAGTTGAAGGCTGCAAAGTCGATCTGTCCTCCGCAAGAGAATACCATCGCAAGCACAAAGTTTGTGAAGCTCATTCTAAGGCACCAAAGGTTATTGTTTCTGGTCTGGAGCGCCGTTTTTGCCAACAGTGTAGTCGGTTTCATGGTTTAGCTGAATTTGACCAGAAAAAGAAAAGTTGCCGCAGGCGTCTATCTGATCATAATGCACGAAGAAGGAAACCGCAACAAGAGGCAATTTCATTTGGTTCATCAAGGCTCGCCACGATGTTTTACGATGCAAGGCAGCAGACAGATATTTACTTTGGCCAATCTCCTTTTGGCCAAGTGAGAAGCAATGCAATTTCTTCATGTGACAACCTGGGAGGCTTCAAATTTACAGAAGCAAAACTCCCCTGGATGAAGCCAATGAAAACTATAGGCCTTGAGGATCTGAATTTCTCTACCCTGCAGATGCCAGGCAATGTTGTGTCGCATACGGTGCATCATCATGATTTTGATGGGCTCATACCATTCAAGGGAAACACCCCGAAGGTCCTCAACCAAGGTGTGGATCCAGCCTGTGCCGTCGTGTCCTCCAACTCGAATGGAGCCCCGGATCTTCGGCGTGCTCTCTCTCTTCTGTCAAGCGATTCCTGGGGCCCGGCCGACGTTCAGGCCGGCTCCCAGGTGCATCCCGGTGGAGTGATGCCGCCCCTCGCCGTTGCCGCCGCCACCGTCACCGCCCCGACGAACCCTGTCAGTGTGATGCATGCTCTGCACCCGTCCACCGGAGGAGGAGGATTCTGGCAAGACGGCGACGACCCGCCTCCGCTCGATCATGCCTCGCAGGCTCAGGCGTTCATGCATCCTGGCAATGGCAGCAGCTCCGGCTATGGCCATCTGCACTGA
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| Protein seq | MASFGMNWNQKSPVFWDWENPAPFGPNTMENPKSIPHPEPRGVVVAAANHGSTNSSGGTFTSSSELANGSSKSSLSASFDSSSKLGNSLEFRFASVKGHGKNMCKDGEAGRVEDSGTSPAVAVSHGEPVIGLKLGKRTYFENVCGGQNVKSSSAASGVTCPSTVVKKMKVSQQSTQSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARRRKPQQEAISFGSSRLATMFYDARQQTDIYFGQSPFGQVRSNAISSCDNLGGFKFTEAKLPWMKPMKTIGLEDLNFSTLQMPGNVVSHTVHHHDFDGLIPFKGNTPKVLNQGVDPACAVVSSNSNGAPDLRRALSLLSSDSWGPADVQAGSQVHPGGVMPPLAVAAATVTAPTNPVSVMHALHPSTGGGGFWQDGDDPPPLDHASQAQAFMHPGNGSSSGYGHLH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0703500 | OsNip_06t0703500-03 | Chr06 | 29703628 | 29707000 | - | RAP2018-11-26 | ||
| CDS seq | CCAGCGCCTTTCGGTCCGAATACAATGGAAAATCCCAAGAGCATACCTCACCCTGAACCAAGAGGTGTAGTTGTCGCGGCCGCAAATCATGGATCCACCAATTCATCCGGTGGCACGTTCACTTCTAGCTCGGAGCTAGCCAATGGTTCATCGAAGAGCTCCTTGTCAGCGTCGTTCGATTCCTCATCCAAGCTGGGGAACAGCTTAGAGTTCAGGTTTGCTTCTGTCAAAGGGCATGGCAAGAACATGTGCAAGGATGGCGAGGCCGGTAGAGTTGAAGACTCGGGCACTTCTCCAGCTGTGGCAGTTAGCCATGGTGAGCCGGTAATAGGACTCAAGTTAGGGAAGAGAACTTACTTTGAAAATGTTTGTGGAGGGCAGAATGTCAAGAGCTCCTCTGCAGCTTCAGGTGTGACTTGTCCATCTACTGTGGTCAAGAAGATGAAGGTGTCTCAGCAGAGCACACAAAGCTCATACTGCCAAGTTGAAGGCTGCAAAGTCGATCTGTCCTCCGCAAGAGAATACCATCGCAAGCACAAAGTTTGTGAAGCTCATTCTAAGGCACCAAAGGTTATTGTTTCTGGTCTGGAGCGCCGTTTTTGCCAACAGTGTAGTCGGTTTCATGGTTTAGCTGAATTTGACCAGAAAAAGAAAAGTTGCCGCAGGCGTCTATCTGATCATAATGCACGAAGAAGGAAACCGCAACAAGAGGCAATTTCATTTGGTTCATCAAGGCTCGCCACGATGTTTTACGATGCAAGGCAGCAGACAGATATTTACTTTGGCCAATCTCCTTTTGGCCAAGTGAGAAGCAATGCAATTTCTTCATGTGACAACCTGGGAGGCTTCAAATTTACAGAAGCAAAACTCCCCTGGATGAAGCCAATGAAAACTATAGGCCTTGAGGATCTGAATTTCTCTACCCTGCAGATGCCAGGCAATGTTGTGTCGCATACGGTGCATCATCATGATTTTGATGGGCTCATACCATTCAAGGGAAACACCCCGAAGGTCCTCAACCAAGGTGTGGATCCAGCCTGTGCCGTCGTGTCCTCCAACTCGAATGGAGCCCCGGATCTTCGGCGTGCTCTCTCTCTTCTGTCAAGCGATTCCTGGGGCCCGGCCGACGTTCAGGCCGGCTCCCAGGTGCATCCCGGTGGAGTGATGCCGCCCCTCGCCGTTGCCGCCGCCACCGTCACCGCCCCGACGAACCCTGTCAGTGTGATGCATGCTCTGCACCCGTCCACCGGAGGAGGAGGATTCTGGCAAGACGGCGACGACCCGCCTCCGCTCGATCATGCCTCGCAGGCTCAGGCGTTCATGCATCCTGGCAATGGCAGCAGCTCCGGCTATGGCCATCTGCACTGA
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| Protein seq | PAPFGPNTMENPKSIPHPEPRGVVVAAANHGSTNSSGGTFTSSSELANGSSKSSLSASFDSSSKLGNSLEFRFASVKGHGKNMCKDGEAGRVEDSGTSPAVAVSHGEPVIGLKLGKRTYFENVCGGQNVKSSSAASGVTCPSTVVKKMKVSQQSTQSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARRRKPQQEAISFGSSRLATMFYDARQQTDIYFGQSPFGQVRSNAISSCDNLGGFKFTEAKLPWMKPMKTIGLEDLNFSTLQMPGNVVSHTVHHHDFDGLIPFKGNTPKVLNQGVDPACAVVSSNSNGAPDLRRALSLLSSDSWGPADVQAGSQVHPGGVMPPLAVAAATVTAPTNPVSVMHALHPSTGGGGFWQDGDDPPPLDHASQAQAFMHPGNGSSSGYGHLH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0703500 | OsNip_06t0703500-04 | Chr06 | 29703650 | 29708687 | - | IsoSeq | ||
| CDS seq | ATGTTGTGTCGCATACGGTGCATCATCATGATTTTGATGGGCTCATACCATTCAAGGGAAACACCCCGAAGGTCCTCAACCAAGGTGTGGATCCAGCCTGTGCCGTCGTGTCCTCCAACTCGAATGGAGCCCCGGATCTTCGGCGTGCTCTCTCTCTTCTGTCAAGCGATTCCTGGGGCCCGGCCGACGTTCAGGCCGGCTCCCAGGTGCATCCCGGTG
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| Protein seq | MLCRIRCIIMILMGSYHSRETPRRSSTKVWIQPVPSCPPTRMEPRIFGVLSLFCQAIPGARPTFRPAPRCIPV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr06 | 29707903 | 29708505 | - | OsNip_06t0703500-04 | OsNip_06t0703500-01,OsNip_06t0703500-04 | All |
| RI | Chr06 | 29707329 | 29707903 | - | OsNip_06t0703500-02 | OsNip_06t0703500-02,OsNip_06t0703500-01 | All |
| AF | Chr06 | 29707903 | 29708687 | - | OsNip_06t0703500-02 | OsNip_06t0703500-02,OsNip_06t0703500-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.997786 | 1.488400 | 4.646187 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0139400 | RBH | 1.876468 | 2.379473 | 4.759631 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g49010 | RBH | 0.649860 | 1.051987 | 0.961861 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0703500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0028280 | RBH | 0.213376 | 18.827074 | 13.976944 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0028090 | RBH | 0.154844 | 3.397365 | 5.953742 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0028240 | RBH | 1.061423 | 18.881569 | 28.230057 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0027830 | RBH | 0.015340 | 0.521596 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0028320 | RBH | 4.872303 | 26.345545 | 21.260715 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0467100 | RBH | 6.1380255 | 11.47194 | 19.8820655 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0027690 | RBH | 0.131735 | 0.487074 | 2.238844 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0450700 | RBH | 4.1614595 | 2.462953 | 25.184695 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0028230 | RBH | 0.032849 | 0.245600 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0028280 | RBH | 0.405445 | 10.158130 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0027870 | RBH | 0.000000 | 12.510051 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0028530 | RBH | 0.462454 | 0.662292 | 2.279495 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0028150 | RBH | 0.234073 | 7.699425 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G028030 | RBH | 0.062166 | 5.476507 | 4.458585 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0028110 | RBH | 0.617260 | 6.652566 | 8.489728 |
